Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0016060 | OGI:01044800 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:14375801-14379354 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtctcctccgctccttgcctccttgcgccgccgccaagacgagtcgcggctgaacaggggagggccgggcggcgatctccatcgcagcggaggggaggggatcctggtgcgtcctctttctgattcatctctctctctctctcccaccccaccgggactggaatttgcttgcgttcgtgaaccctactagcttctcttctagatcttctcctcctccttaatttgatagccttaaacctctcttaaataattcaggtaataacagtttgtttgttcacccaaaagtttgggggttcaactgaacccccatgtcccaagttggatccgcccctggacttcacttgtttgttgtgtacatcataactggaattctggcttaattttaatgtgattctctatcattttttgtgttgctgtactacagctcactgattatatgtcccctactgttgatcgggttcaggtgaatagtctatccttggaggtgcaataaaagcaaaacatgtttgtgaatttgaagccaattagttactcatattcatttttctggcatctacaaccatgacgatgctatcaattcttgtgaggacttttgctggaaacactagttcaaagttcaataaagttgcactgctgaagctgagtaggtggctatcaggatccactcccaacacaaattcattatctagcaagaaacataattttgacaagtctgctctgttattccaaggctgtgcagatgttaggtttctaaagaagatccacgctaatgttttcacacatggactttgctgggatgtgattcttggctctaagattctgagttgttatgctaatttaggtgcattgcatgagtcaaggcttgtttttcagaaaattgtaaatgatgatatttccctgtggaattcagccatggttgattattttagagcaggttatccggaggaggttataattttgtataagagattgaaattgaaccagattggtttcaatgggaaaactattacttttgttatgaaaagctgcactgagcttaagaatctgtacttgggtaaaggagtgcatgcagattcacttaagcttgctctgtctgggaataaattcgtcggctcctccctcattggcttatactccaagtttagcaagacgaatgattcacgtggagtgtttgaagagatcatcaacaaggacattgttgcttacacttcgatgatcactggttattcagaaactgtggattcaattgcatggaacgcatttgaaattgccactgatatgctgcagaacaacttggaaataaaccgtgtgactctggtaagcttactgcaaatagctgggaatctgggagcacttcaggagggtaaatctctccattgctactccataaggagagcaattggtgtctcagatgatattctagagaccagcattgtgaacttttatactcgatgtggagcttatcagtcagcggctactgttctgcaaaattcaaagggaactgttgcttcatggaatgctctgctttctggtcttaatagagctggacagagtttcaatgcaatccagtatttgcctgtgatgctgcatgagcataaagtaactccagattctgtcacttttgcaaacgtgctttcagcctgtgctgagctatgctatttttgctttgctgctagtattcatgcctacttcataagaagatttatacctatggatgttgttttgaccactgcacttattgaggtgtacaccaaatgcacaagagtcatgagatcgaagtatctctttgatcaacttattattaaagatgttgtatcctataacgcgatgatttatggttacctacaaaatgacatggccaatgaggccacctcattactcaattacatgatggcagaaggtgttgctccagattttgcaactgttcttagcctgcttgctgcttttgctgaccaaagagatttagttagagggagatggatccatggttttgcaattaggcatgggttttgttcagatgtggacgttgaaaatcaaattctatatatgtattcagcctgcggaaaaattgcagcagcaagggctatatttgactcattggaaaagaaaaacttggtttcatggacagccatgatgaaaggttgcttatccaatggacatgcagatgaggtggttcaattatttcaagtgatgcaaaaatatggggagaaacctgattctgtttctcttgtaactgcagttcaggctgtttctgatcttggacatctaaatggtctaaaacaaattcattgttttgtttaccgttccttgttggagaaagataagattactgctaattcattgataagtgcatatgccaagtgtggaaagctggatttgtcagcaggtttgttctttagtttgaaatatagaaacttggatacttggaatgcaatgatcagtgcttatgcaatgcatggattccatattaacgtgcttgaaatgttcaagcaaatggaagaagaaaacattcagcctgatgagttaacattctccactgtgcttactgcttgcagccatgctggtcttgtcaaggatggttggcgtattttcaattccatgacctcagtatattcagttcttccacaggaagagcattacggttgcatggttgacttgttgggtcgtgctgggcatctagaagatggatacaaatttataaagctatctaccttaaaagataaatccactatattttgtgctctgctctctgcttgcagaactcatggaaatacacgacttgcacatgctattagcaaagagctccttgagcatggacctcagaatccaggtatttatgctctgatttcagaagtatatgctcaggaagggcagtggaacgaagttgctaatacaaaggccagagctgatttaagtgggttaaagaaacatcctggttctagtttgattgaatcaatggagcaaggaatgtcctgacgtcggcatgttgcacttatggtgtgggaatttttcactatggcctgtttgaaattcttactttacaaatggacccatgcaaaaactatcgcaggaatggaccttgggttattatcgattatgcagtgccaggtcaaaccagttggcagaatgacacggcctggagacttacattacattgtagaggggtcagctccaagctcgtaggcgctgatcctggggcaacacaatcatggattgaggctgtagtggtctatcccactctctgcctgccctcctccctcatgcaaagaacagaggtgcatgaccctcaaatccctctcaaattagccccaaatcaaagggttttctgtggacttcacatggagatcgtgttggaaggtatattctcccttgttcccctcattttgttattttgatggttgatttgagcaaattagggtgaaaccctggtatttatttggctttatttatgcaaaaaaaggtggatgagtatattagttttattggatgaattaaactcaggttatcaatatgtgattgagtatatcaggaagattagtttctatgaactttaa
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| CDS seq | atgacgatgctatcaattcttgtgaggacttttgctggaaacactagttcaaagttcaataaagttgcactgctgaagctgagtaggtggctatcaggatccactcccaacacaaattcattatctagcaagaaacataattttgacaagtctgctctgttattccaaggctgtgcagatgttaggtttctaaagaagatccacgctaatgttttcacacatggactttgctgggatgtgattcttggctctaagattctgagttgttatgctaatttaggtgcattgcatgagtcaaggcttgtttttcagaaaattgtaaatgatgatatttccctgtggaattcagccatggttgattattttagagcaggttatccggaggaggttataattttgtataagagattgaaattgaaccagattggtttcaatgggaaaactattacttttgttatgaaaagctgcactgagcttaagaatctgtacttgggtaaaggagtgcatgcagattcacttaagcttgctctgtctgggaataaattcgtcggctcctccctcattggcttatactccaagtttagcaagacgaatgattcacgtggagtgtttgaagagatcatcaacaaggacattgttgcttacacttcgatgatcactggttattcagaaactgtggattcaattgcatggaacgcatttgaaattgccactgatatgctgcagaacaacttggaaataaaccgtgtgactctggtaagcttactgcaaatagctgggaatctgggagcacttcaggagggtaaatctctccattgctactccataaggagagcaattggtgtctcagatgatattctagagaccagcattgtgaacttttatactcgatgtggagcttatcagtcagcggctactgttctgcaaaattcaaagggaactgttgcttcatggaatgctctgctttctggtcttaatagagctggacagagtttcaatgcaatccagtatttgcctgtgatgctgcatgagcataaagtaactccagattctgtcacttttgcaaacgtgctttcagcctgtgctgagctatgctatttttgctttgctgctagtattcatgcctacttcataagaagatttatacctatggatgttgttttgaccactgcacttattgaggtgtacaccaaatgcacaagagtcatgagatcgaagtatctctttgatcaacttattattaaagatgttgtatcctataacgcgatgatttatggttacctacaaaatgacatggccaatgaggccacctcattactcaattacatgatggcagaaggtgttgctccagattttgcaactgttcttagcctgcttgctgcttttgctgaccaaagagatttagttagagggagatggatccatggttttgcaattaggcatgggttttgttcagatgtggacgttgaaaatcaaattctatatatgtattcagcctgcggaaaaattgcagcagcaagggctatatttgactcattggaaaagaaaaacttggtttcatggacagccatgatgaaaggttgcttatccaatggacatgcagatgaggtggttcaattatttcaagtgatgcaaaaatatggggagaaacctgattctgtttctcttgtaactgcagttcaggctgtttctgatcttggacatctaaatggtctaaaacaaattcattgttttgtttaccgttccttgttggagaaagataagattactgctaattcattgataagtgcatatgccaagtgtggaaagctggatttgtcagcaggtttgttctttagtttgaaatatagaaacttggatacttggaatgcaatgatcagtgcttatgcaatgcatggattccatattaacgtgcttgaaatgttcaagcaaatggaagaagaaaacattcagcctgatgagttaacattctccactgtgcttactgcttgcagccatgctggtcttgtcaaggatggttggcgtattttcaattccatgacctcagtatattcagttcttccacaggaagagcattacggttgcatggttgacttgttgggtcgtgctgggcatctagaagatggatacaaatttataaagctatctaccttaaaagataaatccactatattttgtgctctgctctctgcttgcagaactcatggaaatacacgacttgcacatgctattagcaaagagctccttgagcatggacctcagaatccaggttatcaatatgtgattgagtatatcaggaagattagtttctatgaactttaa
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| Protein seq | MTMLSILVRTFAGNTSSKFNKVALLKLSRWLSGSTPNTNSLSSKKHNFDKSALLFQGCADVRFLKKIHANVFTHGLCWDVILGSKILSCYANLGALHESRLVFQKIVNDDISLWNSAMVDYFRAGYPEEVIILYKRLKLNQIGFNGKTITFVMKSCTELKNLYLGKGVHADSLKLALSGNKFVGSSLIGLYSKFSKTNDSRGVFEEIINKDIVAYTSMITGYSETVDSIAWNAFEIATDMLQNNLEINRVTLVSLLQIAGNLGALQEGKSLHCYSIRRAIGVSDDILETSIVNFYTRCGAYQSAATVLQNSKGTVASWNALLSGLNRAGQSFNAIQYLPVMLHEHKVTPDSVTFANVLSACAELCYFCFAASIHAYFIRRFIPMDVVLTTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMIYGYLQNDMANEATSLLNYMMAEGVAPDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKGCLSNGHADEVVQLFQVMQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGKLDLSAGLFFSLKYRNLDTWNAMISAYAMHGFHINVLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDGWRIFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKSTIFCALLSACRTHGNTRLAHAISKELLEHGPQNPGYQYVIEYIRKISFYEL |
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| Function | Pentatricopeptide repeat-containing protein At4g21300 [UniProtKB/Swiss-Prot:Q9STE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0016060 | OsARC_01g0016060.01 | Chr01 | 14375801 | 14379354 | + | NAM | ||
| CDS seq | atgacgatgctatcaattcttgtgaggacttttgctggaaacactagttcaaagttcaataaagttgcactgctgaagctgagtaggtggctatcaggatccactcccaacacaaattcattatctagcaagaaacataattttgacaagtctgctctgttattccaaggctgtgcagatgttaggtttctaaagaagatccacgctaatgttttcacacatggactttgctgggatgtgattcttggctctaagattctgagttgttatgctaatttaggtgcattgcatgagtcaaggcttgtttttcagaaaattgtaaatgatgatatttccctgtggaattcagccatggttgattattttagagcaggttatccggaggaggttataattttgtataagagattgaaattgaaccagattggtttcaatgggaaaactattacttttgttatgaaaagctgcactgagcttaagaatctgtacttgggtaaaggagtgcatgcagattcacttaagcttgctctgtctgggaataaattcgtcggctcctccctcattggcttatactccaagtttagcaagacgaatgattcacgtggagtgtttgaagagatcatcaacaaggacattgttgcttacacttcgatgatcactggttattcagaaactgtggattcaattgcatggaacgcatttgaaattgccactgatatgctgcagaacaacttggaaataaaccgtgtgactctggtaagcttactgcaaatagctgggaatctgggagcacttcaggagggtaaatctctccattgctactccataaggagagcaattggtgtctcagatgatattctagagaccagcattgtgaacttttatactcgatgtggagcttatcagtcagcggctactgttctgcaaaattcaaagggaactgttgcttcatggaatgctctgctttctggtcttaatagagctggacagagtttcaatgcaatccagtatttgcctgtgatgctgcatgagcataaagtaactccagattctgtcacttttgcaaacgtgctttcagcctgtgctgagctatgctatttttgctttgctgctagtattcatgcctacttcataagaagatttatacctatggatgttgttttgaccactgcacttattgaggtgtacaccaaatgcacaagagtcatgagatcgaagtatctctttgatcaacttattattaaagatgttgtatcctataacgcgatgatttatggttacctacaaaatgacatggccaatgaggccacctcattactcaattacatgatggcagaaggtgttgctccagattttgcaactgttcttagcctgcttgctgcttttgctgaccaaagagatttagttagagggagatggatccatggttttgcaattaggcatgggttttgttcagatgtggacgttgaaaatcaaattctatatatgtattcagcctgcggaaaaattgcagcagcaagggctatatttgactcattggaaaagaaaaacttggtttcatggacagccatgatgaaaggttgcttatccaatggacatgcagatgaggtggttcaattatttcaagtgatgcaaaaatatggggagaaacctgattctgtttctcttgtaactgcagttcaggctgtttctgatcttggacatctaaatggtctaaaacaaattcattgttttgtttaccgttccttgttggagaaagataagattactgctaattcattgataagtgcatatgccaagtgtggaaagctggatttgtcagcaggtttgttctttagtttgaaatatagaaacttggatacttggaatgcaatgatcagtgcttatgcaatgcatggattccatattaacgtgcttgaaatgttcaagcaaatggaagaagaaaacattcagcctgatgagttaacattctccactgtgcttactgcttgcagccatgctggtcttgtcaaggatggttggcgtattttcaattccatgacctcagtatattcagttcttccacaggaagagcattacggttgcatggttgacttgttgggtcgtgctgggcatctagaagatggatacaaatttataaagctatctaccttaaaagataaatccactatattttgtgctctgctctctgcttgcagaactcatggaaatacacgacttgcacatgctattagcaaagagctccttgagcatggacctcagaatccaggttatcaatatgtgattgagtatatcaggaagattagtttctatgaactttaa
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| Protein seq | MTMLSILVRTFAGNTSSKFNKVALLKLSRWLSGSTPNTNSLSSKKHNFDKSALLFQGCADVRFLKKIHANVFTHGLCWDVILGSKILSCYANLGALHESRLVFQKIVNDDISLWNSAMVDYFRAGYPEEVIILYKRLKLNQIGFNGKTITFVMKSCTELKNLYLGKGVHADSLKLALSGNKFVGSSLIGLYSKFSKTNDSRGVFEEIINKDIVAYTSMITGYSETVDSIAWNAFEIATDMLQNNLEINRVTLVSLLQIAGNLGALQEGKSLHCYSIRRAIGVSDDILETSIVNFYTRCGAYQSAATVLQNSKGTVASWNALLSGLNRAGQSFNAIQYLPVMLHEHKVTPDSVTFANVLSACAELCYFCFAASIHAYFIRRFIPMDVVLTTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMIYGYLQNDMANEATSLLNYMMAEGVAPDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKGCLSNGHADEVVQLFQVMQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGKLDLSAGLFFSLKYRNLDTWNAMISAYAMHGFHINVLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDGWRIFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKSTIFCALLSACRTHGNTRLAHAISKELLEHGPQNPGYQYVIEYIRKISFYEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.084696 | 0.156536 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0357800 | RBH | 2.304354 | 3.589734 | 4.942401 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25530 | RBH | 1.557959 | 2.414090 | 1.271972 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0357800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016700 | RBH | 1.233524 | 6.051852 | 6.321580 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016340 | RBH | 0.453912 | 2.239537 | 3.516932 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016580 | RBH | 2.711647 | 6.490096 | 11.264750 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016100 | RBH | 8.680272 | 5.818558 | 21.480713 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0244700 | RBH | 12.652602 | 32.8476465 | 37.6538505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016170 | RBH | 0.541562 | 0.184308 | 1.905853 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0239900 | RBH | 6.3704675 | 38.4814055 | 39.205244 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016060 | RBH | 0.170351 | 0.144163 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016040 | RBH | 0.974605 | 13.545795 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016270 | RBH | 6.308117 | 13.783249 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016120 | RBH | 1.317639 | 0.467149 | 1.484531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015910 | RBH | 0.687429 | 3.826956 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016340 | RBH | 1.108132 | 2.362780 | 3.427088 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016120 | RBH | 1.172103 | 13.208362 | 5.646645 |
