Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0012860 | OGI:01032430 | 10/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:10648884-10650343 | ||||||||
| Gene Symbol | prx16, OsPOD1, POD1 | ||||||||||
| DNA seq | ATGACAAAGGTGGTTAATTTTCCTCCTCTTTTAGAACAAGGTGGCAATAAAAAATTGCAACATGAATGGTGTGTGCATGTATGGTGTAGATTGGAGAACAAAAACGTTTAATTAGGACGAGGTGCAAACTTGCCACTAAGCAAAAACGGCATGCACACAATGGCACACGTACGTTTAATTCTTCACTCGAACCAGTATAGCTTAGCTTTTTAGCTGTTGGTGGCGTTGCAGAACCTCCTGACCTCCCCCCGCGCCCCGGTGAGCACCTCGATGCCTCCCATCTTCACCATCGACGCCGCGAACCGCGCCATCCACGCGGTCAGGTCGCCGGCGTTCTCCCGGACCTTCTCCGCCGTGTCGTTCCGGCCGGCCAGCAGCGCCGCGTCCGACGTGAACAGCACCCGCCCGGCGAGCGCGTTCTTGAAGTACTGGTTGCCCAGCGTCGCCGGCGACACGTGGCTGTTGTTCACCACGCCGTCGTCGGCGGCGCCGCCGCCGTCAGGGCACGCCGCCCTCAGCGCCTCCGCGTAGCTCGCGTCCAGGGAGGCGTCCACCGTCGGGTACAGCCGGTTCTTGAACCCCGAGCAGTGCGCGGTGCCGATGGAGTGCGCACCCGAGAGCGCCACCAGGTCGTCGACGGTGAGCCCCTTGGCGGCGAAGCTCTGGACGAGCTCGTCCGCGTCGAAGAACGGCGACGGGATGCTGGAGAAGACGGAGAAGGCGGACGACACGTTGCCGTCGCGGCGGCCGGAGGGGACCGGGTAGACGAAGCCGCCGGACTTGGCCACCGAGTCGCGGGCGGCGAAGGCGAGGATGTCGGCGCAGGAGACCTTGCCGGGGCAGACGGCCTCCACGGCCGCCTTGATCTTGTTCACGGCGTCGTACCCGCGGAGCGGGATCGCTGTCTTCTCCGGCGAGCCGTTTGCCTTGGTGGGATCAAGAAGGATGGACGCATCACAACCCTGCATGATCAAAAAAAAAAAACTTAGTTTACATTTTTTTAGGGACAAAATGAAGTAATTAATCATCAGTATCTAAGCTTTGCATGCAGTAATCTTGTGAGAAATTAAATAAGCTATCAATTCGATCATAGTTGAAAAATTAAATTAACTTGTGATTAGCAATTAAATTACCATGACAAAGCAATCATGGAAATGTAAACGAAGCAGCGCTGGGGCCATGGAAGGGTCAGCATCGATCAAGCCGTAGACGACATTGCTGATCGTCTGCTCGGCATTTGGGCACGACGATCCGTAGAAATTGTACTGCAGACTTGCAGTTGATATGGAGATGAGGCTCATAGCCTGGAAGGCTACCATGAGAATTAGCTTCATCCCCCTGCTGAACATTCTGAATTCTGACAAGGTTGTTCACGAGGAGATAGCAAAGAAACGCCTGAAACTGAATGAATATATGTGTAGTACGTGATCGCTACCTCAAAGGATTGGTTGATGTTTGAT
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| CDS seq | ATGAAGCTAATTCTCATGGTAGCCTTCCAGGCTATGAGCCTCATCTCCATATCAACTGCAAGTCTGCAGTACAATTTCTACGGATCGTCGTGCCCAAATGCCGAGCAGACGATCAGCAATGTCGTCTACGGCTTGATCGATGCTGACCCTTCCATGGCCCCAGCGCTGCTTCGTTTACATTTCCATGATTGCTTTGTCATGGTAATTTAA |
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| Protein seq | MKLILMVAFQAMSLISISTASLQYNFYGSSCPNAEQTISNVVYGLIDADPSMAPALLRLHFHDCFVMVI |
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| Function | Peroxidase 30 [UniProtKB/Swiss-Prot:Q9LSY7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0012860 | OsARC_01g0012860.01 | Chr01 | 10650008 | 10650217 | - | NAM | ||
| CDS seq | ATGAAGCTAATTCTCATGGTAGCCTTCCAGGCTATGAGCCTCATCTCCATATCAACTGCAAGTCTGCAGTACAATTTCTACGGATCGTCGTGCCCAAATGCCGAGCAGACGATCAGCAATGTCGTCTACGGCTTGATCGATGCTGACCCTTCCATGGCCCCAGCGCTGCTTCGTTTACATTTCCATGATTGCTTTGTCATGGTAATTTAA
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| Protein seq | MKLILMVAFQAMSLISISTASLQYNFYGSSCPNAEQTISNVVYGLIDADPSMAPALLRLHFHDCFVMVI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0012860 | OsARC_01g0012860.02 | Chr01 | 10648884 | 10650343 | - | IsoSeq | ||
| CDS seq | ATGCTGACCCTTCCATGGCCCCAGCGCTGCTTCGTTTACATTTCCATGATTGCTTTGTCATGGGTTGTGATGCGTCCATCCTTCTTGATCCCACCAAGGCAAACGGCTCGCCGGAGAAGACAGCGATCCCGCTCCGCGGGTACGACG |
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| Protein seq | MLTLPWPQRCFVYISMIALSWVVMRPSFLIPPRQTARRRRQRSRSAGTT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.732414 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0327100 | SBH | 5.273015 | 7.575571 | 14.638708 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g18910 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0327100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013360 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013110 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013380 | RBH | 0.000000 | 0.000000 | 0.243327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002500 | RBH | 0.0 | 0.646670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0012970 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0177200 | RBH | 0.0272225 | 0.1674925 | 0.158645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012910 | RBH | 0.306652 | 4.224185 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0176400 | RBH | 0.024655 | 0.176975 | 0.309878 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0012960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013060 | RBH | 0.0 | 1.005049 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012750 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013050 | RBH | 0.0 | 1.806657 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012810 | RBH | 0.0 | 0.0 | 0.0 |
