Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0004030 | OGI:01012590 | 6/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:3060287-3063484 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTGTCCCTCCATCTCCTCATCCCTTGTTCATCAGCAGCAGCTACATACACCAATCACACCAGAGCCATATCACCAGCGGTTCCATGCTTGCCTGACCAGGCAGCGGCTCTGCTCCAACTGAAAAGTTCTTTCTCCATCACCAACGAGTCCATGGCCGCCTTCGATTCATGGAAGGCCGGCGAGGATTGCTGCCGGTGGGAGGGGGTCAGCTGCGGCGATGCCGACGGCCGTGTGACATGGCTTGATTTGGGCGACTGTGGCTTGGAGAGCGGCCAACTTGATCCGGTGCTCTTCAAGCTGACCTCACTTGAGTATCTCAACCTGGGCGGAAATGACTTTAACGAGTCCGAAATACCATCCACCGGGTTCGAGCAGCTTAGCAAGCTCACCCATCTTAATCTCTCCTCGTCCAATTTCGCAGGTCAGGTGCCTGTACATAGTATTGGCCAACTCAATAGTTTGGTCTCTCTTGACATGTCCTCTCGTTTCGGATTGAGTGAGCTATTCGACGACCGTTACAAACGTAACAACTTTAGTTGCAAATCTCATCAATTTGAAGGAGCTCCGTCTTGGTTTGCTGGACCTATCCAACATTGGGGCTGAGTGGTGCAGTGCTTTAAGCAAGTATACTCCAAATCTCCGTGTTCTTAGCCTGCCCTTTTGCTCGCTCAATGGTCCCATTTGCAGAACGCTCTCTAGTTTGCGCTCACTATCCGTGATTGACCTACAATACAACCATTTGACCGGTTCAGTTCCTGAATTCTTTGCCAACTACTCTTCCTTGAGTGTCCTTCAGCTCAGTTATAATTATCTTGAAGGATGGGTCTCTCCTTTAATCTTTCAGAACAAGAAACTAGTGACTATTGATCTTCATAGAAATCATGACTTATCTGGTACTCTACCGAATTTCCCAGTTGGCAGTAGTTTGGAGAGTTTACTTGTTAGTCTGACCAACTTCTCTGGTGGAATACCAAGCACCATCAGCAATCTCAAGTCTTTAAAGAAGCTGGGCCTTGGTGCAAGTGGCTTTTCTGGAGAGCTGCCCTCATCAATTGGTAAGCTTAAATCGTTGAGTTTATTTCAAGTCTCTGGGTTGGAAGTGGTAGGATCTTTTCCCCTATGGATCACGAACTTAACCTCCTTGGAGGTCCTTGAATTTTCCCACTGTGGCTTATCCGGACCAATACCTTCTTCCGTTGGAGATATGAAAAAAATGAGAAAATTAGCACTCTATGGTTGCAACTTTGTAGGGGAAATACCTCCACATATATTAAATTTAACACAACTGGATACCATGCTTCTTCATTCAAATAATTTCATTGGCACAGTCAAACTCTCTTCATTTTGGACACTACGAGACCTATCTGTCTTAAACCTCTCAGACAACAACTTAACTGTAGTAGATGGAGAAAACAATTCTTCACTGATATCCTTGCCCAACATAGAGTACTTGAGTTTGGCATCATGTAACATAACTAAATTTCCAAACATTTTGAGTCATCTAAATAATAATATAATGAGTGGCGTTGATCTTTCACATAACCAAATCCAAGGGGCCATACCACGTTGGGCATGGGAGAAATGGACATATTTTGAATTTTTCTTTTTGAACTTATCACACAATAATTTTACTAGTGTTGGCTACAACTCCTTTCTTCCTATTGCTGTAACGGCGTTGGATCTCAGTTTTAACATGTTTGAGGGGCCAATACCTCTACCCCTATACTCTAGATCCGTGCTTGATTACTCAAACAACCGTTTCTCATCTATACCAATAAATATTTCTACTCAGCTAACAGGTACGACCTATTTTAAGGCATCAAGAAACAATCTCTCCGGGGACATCCCACCATCTTTTTGTAGTAGCAACCTACAATTTTTGGATCTCTCTTACAATCTTTTGAGTGGCTCAATCCCTTCTTGCCTAATCGAGGATGCCAATGCATTACAAGTTCTAAATCTGAAACAAAATCAACTTCATGGAGAACTAGCGTACAATATCAATGAAAGTTGCACATTAGAGGATCTAGATCTCAGCGACAATAGGATTGAAGGAAATTTGCCTAGATCTTTAGTTTCTTGCCGGAAATTGGAGGTCCTTGATATCCAAAACAATCAAATCAACGATTCTTTTCCATGTTGGATGAGTGTAATTCCTAGACTCCAAGTCCTTATCCTAAAATCCAACAAATTCTTTGGGCAAGTGACACCTACTGTTGCTGAGGAAAGCACTTGTGAATTTCCTAGTCTACGGATCCTAGATCTTGCCTCCAACAAATTTTCAGGCACACTGAGGCTGCGTTCTTTCTTCTTCTCAACAGTGATTACGGAAAACGGAGCGATCCATTAGCACATGATTAATTAAGTATCTGCTATTCTTTTTAAAAAAAATGGACTAATATGATTTTTTTAAGTAACTTTCGTATAGAAACTTTTTACAGAAAAATGCACCGTTTAGTAGTTTGAAAAGCGTGCTAACGGAAAACGAGGACGACTAGCCTGAAAAGAACGCAGCCTTAAAGTGATGCATGGTTTATGAGACTTAAGTCGATGATGATTGAATCTACTAACGAAACATTAGTTATGGAGTTTGAAGGTGAACAACATCGGGTCTACCAAGTTAACACTGTGCTCACATACAAAGGGTTTGCCATCGCAATTAGTAAGATACTAAGGACCTTTGTATTCATTGATGTCTCGAATAACGCATTCCATGGAAGCATCCCTAAATCTATGGGAGAGCTAGTTCTGCTACATGCACTCAACATGTCTCATAACTCACTGACGGGGCCGATTCCATCTCAACTCGGCCATCTAAACCAAATGGAGGCTTTGGACCTGTCCTCAAACGAGCTTTTAGGAGTGATCCCACAGGAATTAGCATCCTTGGACTTCCTCGGAACACTAAACCTATCCTACAACAAGCTGGAGGGGAAAATACCAGAATCACTTCATTTCTCGTCATTCTCCAATAGTTCATTTCTTGGGAATGATGCTTTGTGCGGCCCTCCGCTATCTAAAGGCTGCAGCAACATGACATTGCTGAATTTGATACCTTCCGAGAAGAAATCTGTAGATGTTATGCTGTTCCTCTTTTCTGGAATAGGATTTGGCCTTGGATTTGCCATTGCAATTGTTGTATCATGGGGAATTCCCATTAGAAAAAGGTCATTTGTAAGGCAAAGAGCCCTCTGA
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| CDS seq | ATGCTGTCCCTCCATCTCCTCATCCCTTGTTCATCAGCAGCAGCTACATACACCAATCACACCAGAGCCATATCACCAGCGGTTCCATGCTTGCCTGACCAGGCAGCGGCTCTGCTCCAACTGAAAAGTTCTTTCTCCATCACCAACGAGTCCATGGCCGCCTTCGATTCATGGAAGGCCGGCGAGGATTGCTGCCGGTGGGAGGGGGTCAGCTGCGGCGATGCCGACGGCCGTGTGACATGGCTTGATTTGGGCGACTGTGGCTTGGAGAGCGGCCAACTTGATCCGGTGCTCTTCAAGCTGACCTCACTTGAGTATCTCAACCTGGGCGGAAATGACTTTAACGAGTCCGAAATACCATCCACCGGGTTCGAGCAGCTTAGCAAGCTCACCCATCTTAATCTCTCCTCGTCCAATTTCGCAGTTGGCAGTAGTTTGGAGAGTTTACTTGTTAGTCTGACCAACTTCTCTGGTGGAATACCAAGCACCATCAGCAATCTCAAGTCTTTAAAGAAGCTGGGCCTTGGTGCAAGTGGCTTTTCTGGAGAGCTGCCCTCATCAATTGGTGAACAACATCGGGTCTACCAAGTTAACACTGTGCTCACATACAAAGGGTTTGCCATCGCAATTAGTAAGATACTAAGGACCTTTGTATTCATTGATGTCTCGAATAACGCATTCCATGGAAGCATCCCTAAATCTATGGGAGAGCTAGTTCTGCTACATGCACTCAACATGTCTCATAACTCACTGACGGGGCCGATTCCATCTCAACTCGGCCATCTAAACCAAATGGAGGCTTTGGACCTGTCCTCAAACGAGCTTTTAGGAGTGATCCCACAGGAATTAGCATCCTTGGACTTCCTCGGAACACTAAACCTATCCTACAACAAGCTGGAGGGGAAAATACCAGAATCACTTCATTTCTCGTCATTCTCCAATAGTTCATTTCTTGGGAATGATGCTTTGTGCGGCCCTCCGCTATCTAAAGGCTGCAGCAACATGACATTGCTGAATTTGATACCTTCCGAGAAGAAATCTGTAGATGTTATGCTGTTCCTCTTTTCTGGAATAGGATTTGGCCTTGGATTTGCCATTGCAATTGTTGTATCATGGGGAATTCCCATTAGAAAAAGGTCATTTGTAAGGCAAAGAGCCCTCTGA
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| Protein seq | MLSLHLLIPCSSAAATYTNHTRAISPAVPCLPDQAAALLQLKSSFSITNESMAAFDSWKAGEDCCRWEGVSCGDADGRVTWLDLGDCGLESGQLDPVLFKLTSLEYLNLGGNDFNESEIPSTGFEQLSKLTHLNLSSSNFAVGSSLESLLVSLTNFSGGIPSTISNLKSLKKLGLGASGFSGELPSSIGEQHRVYQVNTVLTYKGFAIAISKILRTFVFIDVSNNAFHGSIPKSMGELVLLHALNMSHNSLTGPIPSQLGHLNQMEALDLSSNELLGVIPQELASLDFLGTLNLSYNKLEGKIPESLHFSSFSNSSFLGNDALCGPPLSKGCSNMTLLNLIPSEKKSVDVMLFLFSGIGFGLGFAIAIVVSWGIPIRKRSFVRQRAL |
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| Function | Receptor-like protein 35 [UniProtKB/Swiss-Prot:Q9SRL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0004030 | OsARC_01g0004030.01 | Chr01 | 3060287 | 3063484 | + | NAM | ||
| CDS seq | ATGCTGTCCCTCCATCTCCTCATCCCTTGTTCATCAGCAGCAGCTACATACACCAATCACACCAGAGCCATATCACCAGCGGTTCCATGCTTGCCTGACCAGGCAGCGGCTCTGCTCCAACTGAAAAGTTCTTTCTCCATCACCAACGAGTCCATGGCCGCCTTCGATTCATGGAAGGCCGGCGAGGATTGCTGCCGGTGGGAGGGGGTCAGCTGCGGCGATGCCGACGGCCGTGTGACATGGCTTGATTTGGGCGACTGTGGCTTGGAGAGCGGCCAACTTGATCCGGTGCTCTTCAAGCTGACCTCACTTGAGTATCTCAACCTGGGCGGAAATGACTTTAACGAGTCCGAAATACCATCCACCGGGTTCGAGCAGCTTAGCAAGCTCACCCATCTTAATCTCTCCTCGTCCAATTTCGCAGTTGGCAGTAGTTTGGAGAGTTTACTTGTTAGTCTGACCAACTTCTCTGGTGGAATACCAAGCACCATCAGCAATCTCAAGTCTTTAAAGAAGCTGGGCCTTGGTGCAAGTGGCTTTTCTGGAGAGCTGCCCTCATCAATTGGTGAACAACATCGGGTCTACCAAGTTAACACTGTGCTCACATACAAAGGGTTTGCCATCGCAATTAGTAAGATACTAAGGACCTTTGTATTCATTGATGTCTCGAATAACGCATTCCATGGAAGCATCCCTAAATCTATGGGAGAGCTAGTTCTGCTACATGCACTCAACATGTCTCATAACTCACTGACGGGGCCGATTCCATCTCAACTCGGCCATCTAAACCAAATGGAGGCTTTGGACCTGTCCTCAAACGAGCTTTTAGGAGTGATCCCACAGGAATTAGCATCCTTGGACTTCCTCGGAACACTAAACCTATCCTACAACAAGCTGGAGGGGAAAATACCAGAATCACTTCATTTCTCGTCATTCTCCAATAGTTCATTTCTTGGGAATGATGCTTTGTGCGGCCCTCCGCTATCTAAAGGCTGCAGCAACATGACATTGCTGAATTTGATACCTTCCGAGAAGAAATCTGTAGATGTTATGCTGTTCCTCTTTTCTGGAATAGGATTTGGCCTTGGATTTGCCATTGCAATTGTTGTATCATGGGGAATTCCCATTAGAAAAAGGTCATTTGTAAGGCAAAGAGCCCTCTGA
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| Protein seq | MLSLHLLIPCSSAAATYTNHTRAISPAVPCLPDQAAALLQLKSSFSITNESMAAFDSWKAGEDCCRWEGVSCGDADGRVTWLDLGDCGLESGQLDPVLFKLTSLEYLNLGGNDFNESEIPSTGFEQLSKLTHLNLSSSNFAVGSSLESLLVSLTNFSGGIPSTISNLKSLKKLGLGASGFSGELPSSIGEQHRVYQVNTVLTYKGFAIAISKILRTFVFIDVSNNAFHGSIPKSMGELVLLHALNMSHNSLTGPIPSQLGHLNQMEALDLSSNELLGVIPQELASLDFLGTLNLSYNKLEGKIPESLHFSSFSNSSFLGNDALCGPPLSKGCSNMTLLNLIPSEKKSVDVMLFLFSGIGFGLGFAIAIVVSWGIPIRKRSFVRQRAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.077688 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0161000 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06730 | SBH | 0.0 | 0.0 | 0.045218 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0160700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004470 | SBH | 0.559630 | 0.0 | 0.906528 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004220 | SBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004510 | SBH | 0.072213 | 0.764565 | 1.948779 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004130 | SBH | 0.134132 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004300 | SBH | 3.366402 | 2.023709 | 4.148655 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0056800 | SBH | 0.10463 | 0.270119 | 0.10602 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004250 | SBH | 0.024807 | 0.015142 | 0.051441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0057800 | SBH | 0 | 0 | 0.0139485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004070 | SBH | 0.067293 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004290 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004300 | SBH | 0.032240 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023370 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004300 | RBH | 0.070608 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004190 | RBH | 0.0 | 0.0 | 0.0 |
