Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0701000 | OGI:11083410 | 10/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:28727508-28728821 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATTAAACATCATGTACAACTTCATTATACATCAATACATACACAGTTGCAAAAAGGAAAAAAGGGAAAAAGAAAAGTACAGATACATCGATCACACATGCATATATGACACACTAGAGTTGTGCAAATAAAAAAAACACTTGCTCTCGAGACCAAGATCAAAAAACAACAAACAACATGTAATTAAGTGGGGGTAGTTTACTACATTAAACCCATGACACCGTGATTACTGCGATAGTGATTGAGCTGCATGCACTGTAGTAGATTATTATAGCTGGTTGATCTGAGCTTAAATTAATTGATTAAATTAAGCCCAGTGCTTGACATATCTTCCGTAGTGAGTCTTGGAGTCGTAGTAGCTGTTCCAGAGCGTCACTCCCGCGTAGCTCTCCGTCTTCTGCACCGCCGGCAGCAGCTTCCGGCTGAGCTCCCCGACGCCGACCATGTCGTTCTTCCCCGTCACGTTCGCCGCCGCGAGCCCCAGGAAGATCCGGCTGTTTGGGTACCTCGCCGACCACCTGTTCCACTGCGCCATGACGCCGGCGAGCCCCGCGTGGTTGTACGAGCACCTCGGGTCGTCGTAGAACCTCACGTGGATCTGCGTGAACAGCTTGGTGTCCAGCGCCTTCTTCATCCTCGGGTCAGGGTACGAGCACCTCACCGTCGCCGTCAGCATGATGCCGATGGGGTCGTGGATGTTCTGGTTGTAGTCGTTGATGCGGTTGGCGAGGTCGTCGTAGTGGTCGCCGGGGCCGTGGTCGATGAAGAAGTTGACGCCGTTGACGATGGTGTCGTCGCCGAAGGGGCGGAAGATGCCGGCGCGTGGGCGGCCGAGGAAGGAGTGGTAGAGGTTGTAGGCGACGTCGGCGGCGGACTTGGAGGAAGGGAGGGAGTAGCCGTCGCCGTCGCCGCCGATGGAGAGGAGCATGTAGACGCCCTTGGACTGGCAGTGGCGGATGTCGGCGCCGACGTCTCGGAGGTCGTGGCCGGAGAGGTCGAGCCAGTACTTGCCATGGCCGAAGACGCTGAGGAAGGAGATGATGACGATGTTGTAGTCGCCGGTGTCGCAGGTTTGCCGGAGCGAGCCCTCGGCCTTGTTGCGTCCCCAGAAGACGGCGACGGTCTGCCTCTTCCCCTGAGGGTGGTAGTAGGCGGCGGCCGGCTGGAAGAACACCGCTAACAAGGAGAGGAGGAAGAAGAAGACGGCGATGGTGGCGGCGGATGATCGCCGGCGTTGGGACGCCATTGTTGTGTTCTGGTGTAGTATGGTTGATGGTTGGATTGTGTTGTTGTTGGGTGTAATCAGTGATGAGA
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| CDS seq | ATGGCGTCCCAACGCCGGCGATCATCCGCCGCCACCATCGCCGTCTTCTTCTTCCTCCTCTCCTTGTTAGCGGTGTTCTTCCAGCCGGCCGCCGCCTACTACCACCCTCAGGGGAAGAGGCAGACCGTCGCCGTCTTCTGGGGACGCAACAAGGCCGAGGGCTCGCTCCGGCAAACCTGCGACACCGGCGACTACAACATCGTCATCATCTCCTTCCTCAGCGTCTTCGGCCATGGCAAGTACTGGCTCGACCTCTCCGGCCACGACCTCCGAGACGTCGGCGCCGACATCCGCCACTGCCAGTCCAAGGGCGTCTACATGCTCCTCTCCATCGGCGGCGACGGCGACGGCTACTCCCTCCCTTCCTCCAAGTCCGCCGCCGACGTCGCCTACAACCTCTACCACTCCTTCCTCGGCCGCCCACGCGCCGGCATCTTCCGCCCCTTCGGCGACGACACCATCGTCAACGGCGTCAACTTCTTCATCGACCACGGCCCCGGCGACCACTACGACGACCTCGCCAACCGCATCAACGACTACAACCAGAACATCCACGACCCCATCGGCATCATGCTGACGGCGACGGTGAGGTGCTCGTACCCTGACCCGAGGATGAAGAAGGCGCTGGACACCAAGCTGTTCACGCAGATCCACGTGAGGTTCTACGACGACCCGAGGTGCTCGTACAACCACGCGGGGCTCGCCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGGTACCCAAACAGCCGGATCTTCCTGGGGCTCGCGGCGGCGAACGTGACGGGGAAGAACGACATGGTCGGCGTCGGGGAGCTCAGCCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGAGAGCTACGCGGGAGTGACGCTCTGGAACAGCTACTACGACTCCAAGACTCACTACGGAAGATATGTCAAGCACTGGGCTTAA
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| Protein seq | MASQRRRSSAATIAVFFFLLSLLAVFFQPAAAYYHPQGKRQTVAVFWGRNKAEGSLRQTCDTGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGDGYSLPSSKSAADVAYNLYHSFLGRPRAGIFRPFGDDTIVNGVNFFIDHGPGDHYDDLANRINDYNQNIHDPIGIMLTATVRCSYPDPRMKKALDTKLFTQIHVRFYDDPRCSYNHAGLAGVMAQWNRWSARYPNSRIFLGLAAANVTGKNDMVGVGELSRKLLPAVQKTESYAGVTLWNSYYDSKTHYGRYVKHWA |
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| Function | Xylanase inhibitor protein 1 [UniProtKB/Swiss-Prot:Q7GCM7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0701000 | Os11t0701000-01 | Chr11 | 28727508 | 28728821 | - | irgsp1_rep | ||
| CDS seq | ATGGCGTCCCAACGCCGGCGATCATCCGCCGCCACCATCGCCGTCTTCTTCTTCCTCCTCTCCTTGTTAGCGGTGTTCTTCCAGCCGGCCGCCGCCTACTACCACCCTCAGGGGAAGAGGCAGACCGTCGCCGTCTTCTGGGGACGCAACAAGGCCGAGGGCTCGCTCCGGCAAACCTGCGACACCGGCGACTACAACATCGTCATCATCTCCTTCCTCAGCGTCTTCGGCCATGGCAAGTACTGGCTCGACCTCTCCGGCCACGACCTCCGAGACGTCGGCGCCGACATCCGCCACTGCCAGTCCAAGGGCGTCTACATGCTCCTCTCCATCGGCGGCGACGGCGACGGCTACTCCCTCCCTTCCTCCAAGTCCGCCGCCGACGTCGCCTACAACCTCTACCACTCCTTCCTCGGCCGCCCACGCGCCGGCATCTTCCGCCCCTTCGGCGACGACACCATCGTCAACGGCGTCAACTTCTTCATCGACCACGGCCCCGGCGACCACTACGACGACCTCGCCAACCGCATCAACGACTACAACCAGAACATCCACGACCCCATCGGCATCATGCTGACGGCGACGGTGAGGTGCTCGTACCCTGACCCGAGGATGAAGAAGGCGCTGGACACCAAGCTGTTCACGCAGATCCACGTGAGGTTCTACGACGACCCGAGGTGCTCGTACAACCACGCGGGGCTCGCCGGCGTCATGGCGCAGTGGAACAGGTGGTCGGCGAGGTACCCAAACAGCCGGATCTTCCTGGGGCTCGCGGCGGCGAACGTGACGGGGAAGAACGACATGGTCGGCGTCGGGGAGCTCAGCCGGAAGCTGCTGCCGGCGGTGCAGAAGACGGAGAGCTACGCGGGAGTGACGCTCTGGAACAGCTACTACGACTCCAAGACTCACTACGGAAGATATGTCAAGCACTGGGCTTAA
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| Protein seq | MASQRRRSSAATIAVFFFLLSLLAVFFQPAAAYYHPQGKRQTVAVFWGRNKAEGSLRQTCDTGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGDGYSLPSSKSAADVAYNLYHSFLGRPRAGIFRPFGDDTIVNGVNFFIDHGPGDHYDDLANRINDYNQNIHDPIGIMLTATVRCSYPDPRMKKALDTKLFTQIHVRFYDDPRCSYNHAGLAGVMAQWNRWSARYPNSRIFLGLAAANVTGKNDMVGVGELSRKLLPAVQKTESYAGVTLWNSYYDSKTHYGRYVKHWA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0701000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47510 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0700900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024760 | SBH | 0.135214 | 9.276713 | 3.609650 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024750 | RBH | 0.0 | 4.670290 | 0.198905 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024250 | SBH | 2.051661 | 2.420693 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024280 | SBH | 0.035452 | 0.096681 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024580 | SBH | 0.0 | 28.876137 | 2.041077 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0448700 | RBH | 0.1975 | 1.829027 | 0.850123 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025120 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0444700 | RBH | 0.1419725 | 1.358233 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024890 | SBH | 0.0 | 0.515468 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0025000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024100 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024490 | SBH | 0.205582 | 1.370042 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024480 | RBH | 0.176863 | 0.472943 | 0.198485 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024690 | SBH | 0.781916 | 28.694801 | 0.613216 |
