Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsPr106_11g0024580		OGI:11083410 \| 10/16			PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)			Chr11:31326680-31332470		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		C10923, -
DNA seq		aatgctatagacaccatcttagtcattgggttgagaatggcctacgtagggattactttcctatatcaaacacatgacgccgtaattactgagatagtgattgagctgcatgcatgcatgcacgggctcaagtaattattggttgatttgagtttaattaattatatcaagccaagtccttgacgtatcggccgtagtgagtgagcgagtcgtagtagctgttccagagcatcactcctccgtacgtatccgtgttctgcaccgccggcagcagcttgtcgcggagctcgccgacggcgaccatgtcgttcttccccgtcaagttggccgcgacgacccccaggaagatctgcccgtcggggtacgtcgccgaccacttgctccactgcgccatgacgccggcgagcccggcgtggttataggagcagctcgggtcgtcgtagaagcgaacgtggatgcgccggaacagcttggtgtccagcgccgccttcatcctcgggtcagggtaggagcacctcaccgtcgccgtgagcatgatgccgatggggtcgcggatgttctggttgtagtcgttgatgcggttggcgaggtcgtcgtagtggtcggctgggccgttgtcgatgaagaagtcgacgccgttgacgatggtgtcgtcgccgaaggggtggaaggcgccggggcggtcgccgccgaggacggagtagtagaggttttcggcgacgtcggcggcggacttggaggaagggagggagtattggtagccgtcgccgccgatggagaggagcatgtagacgcccttggactggcagtggcggatgtcggcgccgacgtcgcgaaggtcgtggccggagaggtcgagccagtatttgccgtggccgaagacgctgaggaaggagatgatgacgatgttgtagtcgccggtgtcgcaggtttgccggagcgagccctcggccttgttgcggccccagaagacggcgacgttctgcctctttccttgaggataggcggcggccaactggaggagcagtagcaaggagaggaggacggcggtggcagatgatcgccggcgttgggacgccatcgtgtgtatgctgatgattcgatggtgatgagattaattaggtgcagatgagcttgcatatatatacatgtagtagtagctctagctaagctagcaaaatttgcaacaactagctagcatttggacagatcgattgatcgttaggtagtagcaattcgcaatccacggcgggtgggtgtaatccggagcttagctagcacgcatgagctctctgttcagtttgactagtttgttttagttctagtacatacatatatgctctgtctgtgtttcctgcttttacaatacagccaagcggcggcacacaggaaaagactatgctgcaatgctatgcttctcctgtccatcaggttattaccaccaaaacagggaaagtgaaatcacaacacaaataaaatttcctttcctgactcatgagtacgtacccagagccagaagaaggaagaatgctgcaagtgctgagtgggggcctatttccctggcctttacgcaaacgaccggccggatcggataagagaattttagaccaacgctttcgatctagctgtctctgcttcttcaagctactcctatcaactatatctatatatgtgatctggatggtcatatctcaacaacaaatttcttcaatcctttttctagtagtgtgcatgaatccattaacttacacgcaccataggagaggggcctgcgacaccaacggctagtcatcaccttctataacgtcttcgttatccatagttgggctattttccgctatattataagtatataggcaaagaaggtaccttgagctaataaggaaggactatgtggttccacttggggtgcaaaatatcttgcctgcccttatctcctatccgagtcttctagatctcctggttcttattcccgaaaaaagatctcctggttctatttgaagaatagattatattttgatataaatatagagccaccaagagaggagagtattgaatcatgtaaagagagaacattgtgcagggtgtgcgagaggttcttagaagaagacatcaagagcatcgttgacaaacgcctagcggagatgttgccttagtgcctttttggtctttgtaaatattactaCctccatattttaatgtttgacgccgttgattttttatccaacgtttgaccattcatcttattcaaaaaaaattatgtaattatcatttattttattgtgacttgattcatcatcaaatgttctttaagcatgacataaatattttcatatttacacaaaaaatttgaataagatgaatggtcaaatgttggataaaaagtcaacggcgtcatacattaaaatatggaggtagtacttttattccttacatgtaaatattgctccctgcttattcaatgaatggcaagttgtgccgtcgttcaaaaaaaagagcgtcattgacccgaggacaagatcgagcaaattgtggtctcaactctgtaccgttgaaggtggtcaatctcgccatgcattgcacaaggcgttacaggggcgtgatcgacaaacgatagcgcaggtgatggaggagggtataagggagagcttgcaactcgagagctctttgcattctatgaggtgcagctccactagggatactcgccgatgccgagtccattggcttgctgagtcggaacatcggagaaacatcagctcgatcacttgcattgtagtctttaaatttctcggtccacaagtatatacggatttcatcactatattagattgtgttgacacccaaatttaacatctatacgaaagtatagaaagttttggtcaaaattaaaaaagacccaaacatttcatacaggaccagtctgaccggtggcatacgaccataccgaccggcggcatggggttggacagattccaacggtcggtctgactgaggctgactccgagtccaactacgatgtttcatgtatttctttgtttggacctggggttttctgaatcctatttgatttatagctaataggacgtggaaaaggctctgtggaggtaagaccaatctctttataatggctatgatcagtttaattgagaacacacaatctataattaacacattagccaataaaaatgttcttttaatattgtcgtctattcttttacctagtttttagcctagctcatccattttgggtcggttcgcgttgtaagccatctgtcctcactgcgagagtgtgattcttctttgtaggcttatctagaaagccttccatttcgtccacgagaggagtgtttatcataattagtctaaatcagctctgctaactgatttttatttctaaacccaccttagatcaggatcttctcaaggaaaggtggttggtgactccctcctggctacttttttatgttctttttttccttgtcaattagctagaatAAtttttttgatacatttgtaaccattattttattctagttaatttactaaagttaatttagggcttaagcattttcttggaaaatctattgttattaattcttttacatggcaggccttattactttgtatatcagtggccaaaagtttctgtacccattttgaaaggttgctttgtttcagtttgagaactatacaagtactccctccgttttttaatagatgacgccgttaattttttcttacatatttgaccattcgtcttattcaatttttttttgcaaatatataagatataaatcacacttaaagtactatgagtgataaaacaactcatatcaaaataaattacaattacgtaaatttttggaataagacgaatggtcaaacatgtgagaaaaagtcaacggtgtcatcaattaaaaaacgaaggtagtactatatatgtagttaaactttctaaaattggaccattagtaacgttaacgacggacttatttccctcatgattttaatgctattcattagggactatctatgtggcttttgacaaggagaaaaagcccaaattgtacaaattttgaaccattggatcactttgggattcgtgtaacatatctaaacttagcattttctccttccctcctcaattcacccgctgccaccacttccacgcactcgcgctcttcctccactggatcctccaccaccgcgcgcagcctcctaaatagtcttgcattttgcccatgcgaccaatgttggcccaccgcgccactggtcctctgccgcccacggccatcactttaagccccgagaaaacccccCTcttccccctccccaaccgcctcctatcttaccctaaccccaaaccttaattcgtatgtcccctgccggagttgtagatgtcgccagtgccggaaaaggggggagcttgccggagtctaagaagaagaagcccatgcacaaatcttgatgtggatccaatggtccaaaacctataaaatttcattcctaaatttcggtctaataacatttagcaaatccgtattcattaaacatcatgtacaacttcattatacatcaatacatacacagttgcaaaaaggaaaaaagggaaaaagaaaagtacagatacatcgatcacacatgcatatatgacacactagagttgtgcaaataaaaaaaaacacttgctctcgagaccaagatcaaaaaacaacaaacaacatgtaattaagtgggggtagtttactacattaaacccatgacaccgtgattactgcgatagtgattgagctgcatgcactgtagtagattattatagctggttgatctgagcttaaattaattgattaaattaagcccagtgcttgacatatcttccgtagtgagtcttggagtcgtagtagctgttccagagcgtcactcccgcgtagctctccgtcttctgcaccgccggcagcagcttccggctgagctccccgacgccgaccatgtcgttcttccccgtcacgttcgccgccgcgagccccaggaagatccggctgtttgggtacctcgccgaccacctgttccactgcgccatgacgccggcgagccccgcgtggttgtacgagcacctcgggtcgtcgtagaacctcacgtggatctgcgtgaacagcttggtgtccagcgccttcttcatcctcgggtcagggtacgagcacctcaccgtcgccgtcagcatgatgccgatggggtcgtggatgttctggttgtagtcgttgatgcggttggcgaggtcgtcgtagtggtcgccggggccgtggtcgatgaagaagttgacgccgttgacgatggtgtcgtcgccgaaggggcggaagatgccggcgcgtgggcggccgaggaaggagtggtagaggttgtaggcgacgtcggcggcggacttggaggaagggagggagtagccgtcgccgtcgccgccgatggagaggagcatgtagacgcccttggactggcagtggcggatgtcggcgccgacgtctcggaggtcgtggccggagaggtcgagccagtacttgccatggccgaagacgctgaggaaggagatgatgacgatgttgtagtcgccggtgtcgcaggtttgccggagcgagccctcggccttgttgcgtccccagaagacggcgacggtctgcctcttcccctgagggtggtagtaggcggcggccggctggaagaacaccgctaacaaggaGAGgaggaagaagaagacggcgatggtggcggcggatgatcgccggcgttgggacgccat More
CDS seq		atggcgtcccaacgccggcgatcatccgccgccaccatcgccgtcttcttcttcctcCTCtccttgttagcggtgttcttccagccggccgccgcctactaccaccctcaggggaagaggcagaccgtcgccgtcttctggggacgcaacaaggccgagggctcgctccggcaaacctgcgacaccggcgactacaacatcgtcatcatctccttcctcagcgtcttcggccatggcaagtactggctcgacctctccggccacgacctccgagacgtcggcgccgacatccgccactgccagtccaagggcgtctacatgctcctctccatcggcggcgacggcgacggctactccctcccttcctccaagtccgccgccgacgtcgcctacaacctctaccactccttcctcggccgcccacgcgccggcatcttccgccccttcggcgacgacaccatcgtcaacggcgtcaacttcttcatcgaccacggccccggcgaccactacgacgacctcgccaaccgcatcaacgactacaaccagaacatccacgaccccatcggcatcatgctgacggcgacggtgaggtgctcgtaccctgacccgaggatgaagaaggcgctggacaccaagctgttcacgcagatccacgtgaggttctacgacgacccgaggtgctcgtacaaccacgcggggctcgccggcgtcatggcgcagtggaacaggtggtcggcgaggtacccaaacagccggatcttcctggggctcgcggcggcgaacgtgacggggaagaacgacatggtcggcgtcggggagctcagccggaagctgctgccggcggtgcagaagacggagagctacgcgggagtgacgctctggaacagctactacgactccaagactcactacggaagatatttggccgccgcctatcctcaaggaaagaggcagaacgtcgccgtcttctggggccgcaacaaggccgagggctcgctccggcaaacctgcgacaccggcgactacaacatcgtcatcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggccacgaccttcgcgacgtcggcgccgacatccgccactgccagtccaagggcgtctacatgctcctctccatcggcggcgacggctaccaatactccctcccttcctccaagtccgccgccgacgtcgccgaaaacctctactactccgtcctcggcggcgaccgccccggcgccttccaccccttcggcgacgacaccatcgtcaacggcgtcgacttcttcatcgacaacggcccagccgaccactacgacgacctcgccaaccgcatcaacgactacaaccagaacatccgcgaccccatcggcatcatgctcacggcgacggtgaggtgctcctaccctgacccgaggatgaaggcggcgctggacaccaagctgttccggcgcatccacgttcgcttctacgacgacccgagctgctcctataaccacgccgggctcgccggcgtcatggcgcagtggagcaagtggtcggcgacgtaccccgacgggcagatcttcctgggggtcgtcgcggccaacttgacggggaagaacgacatggtcgccgtcggcgagctccgcgacaagctgctgccggcggtgcagaacacggatacgtacggaggagtgatgctctggaacagctactacgactcgctcactcactacggccgatacgtcaaggacttggcttga More
Protein seq		MASQRRRSSAATIAVFFFLLSLLAVFFQPAAAYYHPQGKRQTVAVFWGRNKAEGSLRQTCDTGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGDGYSLPSSKSAADVAYNLYHSFLGRPRAGIFRPFGDDTIVNGVNFFIDHGPGDHYDDLANRINDYNQNIHDPIGIMLTATVRCSYPDPRMKKALDTKLFTQIHVRFYDDPRCSYNHAGLAGVMAQWNRWSARYPNSRIFLGLAAANVTGKNDMVGVGELSRKLLPAVQKTESYAGVTLWNSYYDSKTHYGRYLAAAYPQGKRQNVAVFWGRNKAEGSLRQTCDTGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGYQYSLPSSKSAADVAENLYYSVLGGDRPGAFHPFGDDTIVNGVDFFIDNGPADHYDDLANRINDYNQNIRDPIGIMLTATVRCSYPDPRMKAALDTKLFRRIHVRFYDDPSCSYNHAGLAGVMAQWSKWSATYPDGQIFLGVVAANLTGKNDMVAVGELRDKLLPAVQNTDTYGGVMLWNSYYDSLTHYGRYVKDLA
Function		Xylanase inhibitor protein 1 [UniProtKB/Swiss-Prot:Q7GCM7]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsPr106_11g0024580	OsPr106_11g0024580.01	Chr11	31326846	31332470	-	NAM
CDS seq	atggcgtcccaacgccggcgatcatccgccgccaccatcgccgtcttcttcttcctcCTCtccttgttagcggtgttcttccagccggccgccgcctactaccaccctcaggggaagaggcagaccgtcgccgtcttctggggacgcaacaaggccgagggctcgctccggcaaacctgcgacaccggcgactacaacatcgtcatcatctccttcctcagcgtcttcggccatggcaagtactggctcgacctctccggccacgacctccgagacgtcggcgccgacatccgccactgccagtccaagggcgtctacatgctcctctccatcggcggcgacggcgacggctactccctcccttcctccaagtccgccgccgacgtcgcctacaacctctaccactccttcctcggccgcccacgcgccggcatcttccgccccttcggcgacgacaccatcgtcaacggcgtcaacttcttcatcgaccacggccccggcgaccactacgacgacctcgccaaccgcatcaacgactacaaccagaacatccacgaccccatcggcatcatgctgacggcgacggtgaggtgctcgtaccctgacccgaggatgaagaaggcgctggacaccaagctgttcacgcagatccacgtgaggttctacgacgacccgaggtgctcgtacaaccacgcggggctcgccggcgtcatggcgcagtggaacaggtggtcggcgaggtacccaaacagccggatcttcctggggctcgcggcggcgaacgtgacggggaagaacgacatggtcggcgtcggggagctcagccggaagctgctgccggcggtgcagaagacggagagctacgcgggagtgacgctctggaacagctactacgactccaagactcactacggaagatatttggccgccgcctatcctcaaggaaagaggcagaacgtcgccgtcttctggggccgcaacaaggccgagggctcgctccggcaaacctgcgacaccggcgactacaacatcgtcatcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggccacgaccttcgcgacgtcggcgccgacatccgccactgccagtccaagggcgtctacatgctcctctccatcggcggcgacggctaccaatactccctcccttcctccaagtccgccgccgacgtcgccgaaaacctctactactccgtcctcggcggcgaccgccccggcgccttccaccccttcggcgacgacaccatcgtcaacggcgtcgacttcttcatcgacaacggcccagccgaccactacgacgacctcgccaaccgcatcaacgactacaaccagaacatccgcgaccccatcggcatcatgctcacggcgacggtgaggtgctcctaccctgacccgaggatgaaggcggcgctggacaccaagctgttccggcgcatccacgttcgcttctacgacgacccgagctgctcctataaccacgccgggctcgccggcgtcatggcgcagtggagcaagtggtcggcgacgtaccccgacgggcagatcttcctgggggtcgtcgcggccaacttgacggggaagaacgacatggtcgccgtcggcgagctccgcgacaagctgctgccggcggtgcagaacacggatacgtacggaggagtgatgctctggaacagctactacgactcgctcactcactacggccgatacgtcaaggacttggcttga More
Protein seq	MASQRRRSSAATIAVFFFLLSLLAVFFQPAAAYYHPQGKRQTVAVFWGRNKAEGSLRQTCDTGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGDGYSLPSSKSAADVAYNLYHSFLGRPRAGIFRPFGDDTIVNGVNFFIDHGPGDHYDDLANRINDYNQNIHDPIGIMLTATVRCSYPDPRMKKALDTKLFTQIHVRFYDDPRCSYNHAGLAGVMAQWNRWSARYPNSRIFLGLAAANVTGKNDMVGVGELSRKLLPAVQKTESYAGVTLWNSYYDSKTHYGRYLAAAYPQGKRQNVAVFWGRNKAEGSLRQTCDTGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGYQYSLPSSKSAADVAENLYYSVLGGDRPGAFHPFGDDTIVNGVDFFIDNGPADHYDDLANRINDYNQNIRDPIGIMLTATVRCSYPDPRMKAALDTKLFRRIHVRFYDDPSCSYNHAGLAGVMAQWSKWSATYPDGQIFLGVVAANLTGKNDMVAVGELRDKLLPAVQNTDTYGGVMLWNSYYDSLTHYGRYVKDLA More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsPr106_11g0024580	OsPr106_11g0024580.02	Chr11	31326680	31327233	-	IsoSeq
CDS seq	atgcatgcatgcagctcaatcactatctcagtaattacggcgtcatgt
Protein seq	MHACSSITISVITASC

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	28.876137	2.041077

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_11g0700900	RBH	1.849267	0.977381	0.466186
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os11g47510	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os11g0700900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_11g0024760	RBH	0.135214	9.276713	3.609650
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_11g0024750	RBH	0.0	4.670290	0.198905
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0024250	RBH	2.051661	2.420693	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_11g0024280	RBH	0.035452	0.096681	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_08g0022100	RBH	0.0	7.171383	0.821102
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_11G0448600	RBH	1.6099575	4.1992405	1.5686445
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0025100	RBH	0.317600	0.0	0.133816
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_11G0444600	RBH	1.596734	2.282752	0.107595
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_11g0024890	RBH	0.0	0.515468	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_11g0025000	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_11g0024370	RBH	0.110103	23.995518	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_11g0024100	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0024490	RBH	0.205582	1.370042	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G024480	RBH	0.176863	0.472943	0.198485
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_11g0024690	RBH	0.781916	28.694801	0.613216

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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