Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0024250 | OGI:11083400 | 11/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:28428743-28429663 | ||||||||
| Gene Symbol | C10923, - | ||||||||||
| DNA seq | ttaagccaagtccttgacgtatcggccgtagtgagtgagcgagtcgtagtagctgttccagagcatcactcctccgtacgtatccgtgttctgcaccgccggcagcagcttgtcccggagctcgccgacgccgaccatgtcgttcttccccgtcaagttggccgccacgagccccaggaagatctgcccgtcggggtacgccgccgaccacctgttccactgcgccatgacgccggcgagcccggcgtggttgtaggagcagctcgggtcgtcgtagaacctgacgtggattcgccggaacagcttggtgtccagcgccgccttcatcctcgggtccgggtacgagcacctcaccgtcgccgtgagcatgatcccgatggggtcatggatgttctggttgtagtcgttgatgcggttcgcgaggtcgtcgtagtggtcggcggggccgttgtcgatgaagaagtcaacgccgttgacgatggtgtcgccgccgaaggggtggaaggcgccggggcggtcgccgccgaggactgagtagtagaggctctcggcgacgtcggcggcggacttggaggaagggagggagtactggtcgccgtcgccgccgatggagaggagcatgtagacgcccttggactggcagtggcggatgtcggcgccgacgtcgcgaaggtcgtggccggagaggtcgagccagtacttgccgtggccgaagacgctgaggaaggagatgatgacgatgttgtagtcgccggagtcgcagatggaactgagagagccctcggccttgttgcggccccagaagacggcgacgttctgcctctttccctgaggataggcggcggctgactggaggagcagtagcaaggagaggaggaggaagacggcggtggcagatgatcgccggcgttgggacgccat
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| CDS seq | atggcgtcccaacgccggcgatcatctgccaccgccgtcttcctcctcctctccttgctactgctcctccagtcagccgccgcctatcctcagggaaagaggcagaacgtcgccgtcttctggggccgcaacaaggccgagggctctctcagttccatctgcgactccggcgactacaacatcgtcatcatctccttcctcagcgtcttcggccacggcaagtactggctcgacctctccggccacgaccttcgcgacgtcggcgccgacatccgccactgccagtccaagggcgtctacatgctcctctccatcggcggcgacggcgaccagtactccctcccttcctccaagtccgccgccgacgtcgccgagagcctctactactcagtcctcggcggcgaccgccccggcgccttccaccccttcggcggcgacaccatcgtcaacggcgttgacttcttcatcgacaacggccccgccgaccactacgacgacctcgcgaaccgcatcaacgactacaaccagaacatccatgaccccatcgggatcatgctcacggcgacggtgaggtgctcgtacccggacccgaggatgaaggcggcgctggacaccaagctgttccggcgaatccacgtcaggttctacgacgacccgagctgctcctacaaccacgccgggctcgccggcgtcatggcgcagtggaacaggtggtcggcggcgtaccccgacgggcagatcttcctggggctcgtggcggccaacttgacggggaagaacgacatggtcggcgtcggcgagctccgggacaagctgctgccggcggtgcagaacacggatacgtacggaggagtgatgctctggaacagctactacgactcgctcactcactacggccgatacgtcaaggacttggcttaa
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| Protein seq | MASQRRRSSATAVFLLLSLLLLLQSAAAYPQGKRQNVAVFWGRNKAEGSLSSICDSGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGDQYSLPSSKSAADVAESLYYSVLGGDRPGAFHPFGGDTIVNGVDFFIDNGPADHYDDLANRINDYNQNIHDPIGIMLTATVRCSYPDPRMKAALDTKLFRRIHVRFYDDPSCSYNHAGLAGVMAQWNRWSAAYPDGQIFLGLVAANLTGKNDMVGVGELRDKLLPAVQNTDTYGGVMLWNSYYDSLTHYGRYVKDLA |
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| Function | Xylanase inhibitor protein 1 [UniProtKB/Swiss-Prot:Q7GCM7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0024250 | OsCMeo_11g0024250.01 | Chr11 | 28428743 | 28429663 | - | NAM | ||
| CDS seq | atggcgtcccaacgccggcgatcatctgccaccgccgtcttcctcctcctctccttgctactgctcctccagtcagccgccgcctatcctcagggaaagaggcagaacgtcgccgtcttctggggccgcaacaaggccgagggctctctcagttccatctgcgactccggcgactacaacatcgtcatcatctccttcctcagcgtcttcggccacggcaagtactggctcgacctctccggccacgaccttcgcgacgtcggcgccgacatccgccactgccagtccaagggcgtctacatgctcctctccatcggcggcgacggcgaccagtactccctcccttcctccaagtccgccgccgacgtcgccgagagcctctactactcagtcctcggcggcgaccgccccggcgccttccaccccttcggcggcgacaccatcgtcaacggcgttgacttcttcatcgacaacggccccgccgaccactacgacgacctcgcgaaccgcatcaacgactacaaccagaacatccatgaccccatcgggatcatgctcacggcgacggtgaggtgctcgtacccggacccgaggatgaaggcggcgctggacaccaagctgttccggcgaatccacgtcaggttctacgacgacccgagctgctcctacaaccacgccgggctcgccggcgtcatggcgcagtggaacaggtggtcggcggcgtaccccgacgggcagatcttcctggggctcgtggcggccaacttgacggggaagaacgacatggtcggcgtcggcgagctccgggacaagctgctgccggcggtgcagaacacggatacgtacggaggagtgatgctctggaacagctactacgactcgctcactcactacggccgatacgtcaaggacttggcttaa
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| Protein seq | MASQRRRSSATAVFLLLSLLLLLQSAAAYPQGKRQNVAVFWGRNKAEGSLSSICDSGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGDQYSLPSSKSAADVAESLYYSVLGGDRPGAFHPFGGDTIVNGVDFFIDNGPADHYDDLANRINDYNQNIHDPIGIMLTATVRCSYPDPRMKAALDTKLFRRIHVRFYDDPSCSYNHAGLAGVMAQWNRWSAAYPDGQIFLGLVAANLTGKNDMVGVGELRDKLLPAVQNTDTYGGVMLWNSYYDSLTHYGRYVKDLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.051661 | 2.420693 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0700900 | RBH | 1.849267 | 0.977381 | 0.466186 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47500 | RBH | 1.355093 | 0.551516 | 0.167876 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0700900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024760 | RBH | 0.135214 | 9.276713 | 3.609650 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024750 | RBH | 0.0 | 4.670290 | 0.198905 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024260 | RBH | 0.0 | 1.597823 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024280 | RBH | 0.035452 | 0.096681 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024580 | RBH | 0.0 | 28.876137 | 2.041077 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0448600 | RBH | 1.6099575 | 4.1992405 | 1.5686445 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025100 | RBH | 0.317600 | 0.0 | 0.133816 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0444600 | RBH | 1.596734 | 2.282752 | 0.107595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024890 | RBH | 0.0 | 0.515468 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0025000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024370 | RBH | 0.110103 | 23.995518 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024490 | RBH | 0.205582 | 1.370042 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024480 | RBH | 0.176863 | 0.472943 | 0.198485 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024690 | RBH | 0.781916 | 28.694801 | 0.613216 |
