Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0106900 | OGI:08042450 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:336444-337882 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGTCCATACAAGTGAAACTCGGTCCAGAAATTAAACATACAATAGAAATTCAAAAAAATCAAGATGTCCATACAACAGAACTGCTACATATTAGTGTCCACGATGGTTTTGACGGTCCTCCCACATTTGATCAGCAAGGGCTTGCCTGAATTGAACCATCAATGCATGTTCATTTGCTTCGCCAATAGATGTTTCATTGGGTTCAATTATTTCATTTGGACCTATGAAAAGCTCATCAATCCCATCATTTATGACCCAATTATGAATAATGCAGCAAGCTGCTACAATATCTACTTGAGTTGGGAAAGGGAAGAATGGAGTGGCATCATCAAGAATTTTGAATCTTCTCTTTAGTGACCCAAATGCACGCTCAACCGTGATTCGAAGGGATGAGTGCCTAAGGTTGAACAACTCCTTCTCATTTTGCACCGGATTATTCCCCCACTCATTCAAGTGGTACCGGACAGCACGAAAGGGAGGAAGGAATCCTTGTTTGGCTCCATATCCAGCATCAACTAGGTAGTATTTTCCTATCAAATGAGGGACAAGTTGATCAAATTTCTACCTTTTAACATTTCCCATGGACAAATTGATGGAACTAAATATATCTATTACCTTGTGGAATACGAAGGCCATTTTCACGTTCCAATGCATCTCTTAAAACTACAGCATCATGTGCTGTCCCCTCCCAACCAACCAAGACATAAGTGAACCGAAGATCAAAATCTACGGCCGCCATTACATTTTGCGTGGCATGAGACTTCCTACCACGAAATGAAGACTCCATATTCTTCCGGACAGAGGCTCTAATGTGTGTACCATCAATAGCTCCAATACAATCCTAATTTGTGTTCAGTACCATAAATAATTAGGGACCACATATATATTTGGAAATAAAAATCTGAAAAGGAGATAGATAAATGCCACACCTTAAAGTAAGGATCCCATCTGGGGTTCCCGGCTATTTTATTTGGGGTGTCCAATGAGGGGGGCCTGATTAGTTCATCTCGTAGCTCACCAATAGCATGAAGTACTTTGTTGAAATAACGACTAACTGTTTCTCCGGACCTATCAAAATTAGTGCGAACTAACCTATTTCTAAGGTTGTGTCCCACTGTATTTAGAAACATAGCAACCTGCTCCTCAACACGCATGTGGATGGTATCCTCAAGCAAACCCCGATCTCTAAACAGCTTACAAAATCGAAAGAAAGAATCTTTTCTAAGTCTAAGCATGTCGATACAAGTTGTATCATTCCTCCAAATTTTTGTGTCTAGGTATTCAAATCTCATTCGATCCCTTTCATCCATTGGGCCATACTTAACACCTTGTCTCCGTGCACATCTCTTTCTTTTTCTAGATTGAATAATAATGGCCATCATTGACAATAAAATATGTGCAGCAGCAGCAAAAATTAAAAGCTTGGTCCTCTTATCCAT
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| CDS seq | ATGGATAAGAGGACCAAGCTTTTAATTTTTGCTGCTGCTGCACATATTTTATTGTCAATGATGGCCATTATTATTCAATCTAGAAAAAGAAAGAGATGTGCACGGAGACAAGGTGTTAAGTATGGCCCAATGGATGAAAGGGATCGAATGAGATTTGAATACCTAGACACAAAAATTTGGAGGAATGATACAACTTGTATCGACATGCTTAGACTTAGAAAAGATTCTTTCTTTCGATTTTGTAAGCTGTTTAGAGATCGGGGTTTGCTTGAGGATACCATCCACATGCGTGTTGAGGAGCAGGTTGCTATGTTTCTAAATACAGTGGGACACAACCTTAGAAATAGGTTAGTTCGCACTAATTTTGATAGGTCCGGAGAAACAGTTAGTCGTTATTTCAACAAAGTACTTCATGCTATTGGTGAGCTACGAGATGAACTAATCAGGCCCCCCTCATTGGACACCCCAAATAAAATAGCCGGGAACCCCAGATGGGATCCTTACTTTAAGGATTGTATTGGAGCTATTGATGGTACACACATTAGAGCCTCTGTCCGGAAGAATATGGAGTCTTCATTTCGTGGTAGGAAGTCTCATGCCACGCAAAATGTAATGGCGGCCGTAGATTTTGATCTTCGGTTCACTTATGTCTTGGTTGGTTGGGAGGGGACAGCACATGATGCTGTAGTTTTAAGAGATGCATTGGAACGTGAAAATGGCCTTCGTATTCCACAAGGAAAATACTACCTAGTTGATGCTGGATATGGAGCCAAACAAGGATTCCTTCCTCCCTTTCGTGCTGTCCGGTACCACTTGAATGAGTGGGGGAATAATCCGGTGCAAAATGAGAAGGAGTTGTTCAACCTTAGGCACTCATCCCTTCGAATCACGGTTGAGCGTGCATTTGGGTCACTAAAGAGAAGATTCAAAATTCTTGATGATGCCACTCCATTCTTCCCTTTCCCAACTCAAGTAGATATTGTAGCAGCTTGCTGCATTATTCATAATTGGGTCATAAATGATGGGATTGATGAGCTTTTCATAGGTCCAAATGAAATAATTGAACCCAATGAAACATCTATTGGCGAAGCAAATGAACATGCATTGATGGTTCAATTCAGGCAAGCCCTTGCTGATCAAATGTGGGAGGACCGTCAAAACCATCGTGGACACTAA
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| Protein seq | MDKRTKLLIFAAAAHILLSMMAIIIQSRKRKRCARRQGVKYGPMDERDRMRFEYLDTKIWRNDTTCIDMLRLRKDSFFRFCKLFRDRGLLEDTIHMRVEEQVAMFLNTVGHNLRNRLVRTNFDRSGETVSRYFNKVLHAIGELRDELIRPPSLDTPNKIAGNPRWDPYFKDCIGAIDGTHIRASVRKNMESSFRGRKSHATQNVMAAVDFDLRFTYVLVGWEGTAHDAVVLRDALERENGLRIPQGKYYLVDAGYGAKQGFLPPFRAVRYHLNEWGNNPVQNEKELFNLRHSSLRITVERAFGSLKRRFKILDDATPFFPFPTQVDIVAACCIIHNWVINDGIDELFIGPNEIIEPNETSIGEANEHALMVQFRQALADQMWEDRQNHRGH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0106900 | Os08t0106900-00 | Chr08 | 336444 | 337882 | - | irgsp1_rep | ||
| CDS seq | ATGGATAAGAGGACCAAGCTTTTAATTTTTGCTGCTGCTGCACATATTTTATTGTCAATGATGGCCATTATTATTCAATCTAGAAAAAGAAAGAGATGTGCACGGAGACAAGGTGTTAAGTATGGCCCAATGGATGAAAGGGATCGAATGAGATTTGAATACCTAGACACAAAAATTTGGAGGAATGATACAACTTGTATCGACATGCTTAGACTTAGAAAAGATTCTTTCTTTCGATTTTGTAAGCTGTTTAGAGATCGGGGTTTGCTTGAGGATACCATCCACATGCGTGTTGAGGAGCAGGTTGCTATGTTTCTAAATACAGTGGGACACAACCTTAGAAATAGGTTAGTTCGCACTAATTTTGATAGGTCCGGAGAAACAGTTAGTCGTTATTTCAACAAAGTACTTCATGCTATTGGTGAGCTACGAGATGAACTAATCAGGCCCCCCTCATTGGACACCCCAAATAAAATAGCCGGGAACCCCAGATGGGATCCTTACTTTAAGGATTGTATTGGAGCTATTGATGGTACACACATTAGAGCCTCTGTCCGGAAGAATATGGAGTCTTCATTTCGTGGTAGGAAGTCTCATGCCACGCAAAATGTAATGGCGGCCGTAGATTTTGATCTTCGGTTCACTTATGTCTTGGTTGGTTGGGAGGGGACAGCACATGATGCTGTAGTTTTAAGAGATGCATTGGAACGTGAAAATGGCCTTCGTATTCCACAAGGAAAATACTACCTAGTTGATGCTGGATATGGAGCCAAACAAGGATTCCTTCCTCCCTTTCGTGCTGTCCGGTACCACTTGAATGAGTGGGGGAATAATCCGGTGCAAAATGAGAAGGAGTTGTTCAACCTTAGGCACTCATCCCTTCGAATCACGGTTGAGCGTGCATTTGGGTCACTAAAGAGAAGATTCAAAATTCTTGATGATGCCACTCCATTCTTCCCTTTCCCAACTCAAGTAGATATTGTAGCAGCTTGCTGCATTATTCATAATTGGGTCATAAATGATGGGATTGATGAGCTTTTCATAGGTCCAAATGAAATAATTGAACCCAATGAAACATCTATTGGCGAAGCAAATGAACATGCATTGATGGTTCAATTCAGGCAAGCCCTTGCTGATCAAATGTGGGAGGACCGTCAAAACCATCGTGGACACTAA
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| Protein seq | MDKRTKLLIFAAAAHILLSMMAIIIQSRKRKRCARRQGVKYGPMDERDRMRFEYLDTKIWRNDTTCIDMLRLRKDSFFRFCKLFRDRGLLEDTIHMRVEEQVAMFLNTVGHNLRNRLVRTNFDRSGETVSRYFNKVLHAIGELRDELIRPPSLDTPNKIAGNPRWDPYFKDCIGAIDGTHIRASVRKNMESSFRGRKSHATQNVMAAVDFDLRFTYVLVGWEGTAHDAVVLRDALERENGLRIPQGKYYLVDAGYGAKQGFLPPFRAVRYHLNEWGNNPVQNEKELFNLRHSSLRITVERAFGSLKRRFKILDDATPFFPFPTQVDIVAACCIIHNWVINDGIDELFIGPNEIIEPNETSIGEANEHALMVQFRQALADQMWEDRQNHRGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0106900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01570 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011770 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011900 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011960 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011810 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011700 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0220300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0040600 | SBH | 0.534927 | 5.590994 | 2.142001 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011320 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002190 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009060 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011540 | RBH | 0.0 | 0.0 | 0.0 |
