Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_08G009060 | OGI:08042450 | 15/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr08:10260408-10263513 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGCCCTTGATGATGGGTTGTGGACTTGTGGTCCGGGTGTATATGTGCAGTACTGCTAGCTCTTGTTGATCGTAGTTATATTGCCTCCCGTTAATGGTACTGCTAGCTAATTCCTGAAAAATGAATATGTGTAAAGGCAGCTAAATGTTCTCGTTTGCTGTGTTGATTTCTTTGACATCATTCTTTGTTTCTCTCTTAAATAAACCTCCTTGTATCAAATATAGCAGCAACAAAGCTGGGCGTGTTTATATAAAAGAAATACTGTATGACTGAAATTAGACTTCAAAGCTCCATAACTAGTGCAGCAATAACACATCATGCATTACAGCATTTTGGTTTGCACATATCCCTACATAGTAGTACTTCGTAATCACCCACATAGTAGTGCCATATATTACATCATGGGTTTGCACTAACCCCTACTTTATACTTCACACTGCCATCCCCTATATGGTAGTGGCAACATATATCATAAGTATATAACAGTAACATGGGTTTATCAAAATGCATTGCTCCCTAACCAAAATGTCACCACCTGGCAAATGATTCACAGAGTGACATAGCCACCATCGGTAGCACATTTGCGCCCAAAGTAATCTATAACCCAAGCTTGGAAACTTTCATCACTTGCAACTCGCAGATAAGAACGAAAGCATTCTTGTTCTGGCTTGGTGAGAAAGATTGCAAGTTCAATTTTGTCACTTGCTGGGATGGTGAGGTCTTCTATGCGCTTCCAAATACTTGCATTTGGATCTCCTACAGAGGGCACTTCAACAGATGCAACAGACTGTGCAGATGCAAGAGAGTTAGCAAGCCTAAGGATACTAGCTATCAGCTCATCCTCCTCTGCTTTGTGGCGGCTCGTTTTATGCTTCACAATCTTCTTGGTAGGTGATTTCACAAACTTACGCTTCTGCCCTGAAGAAGTGGCATCAGTTGTCGGACTATAGCGAGGTATTGTGTCGGAATCATTGCCACCATCTTGCAGTGGAAATGTATATTCTTCCAACTCCTTGATGCTACCACTGCCATCACTATCACTACTAGTATTAGCAGTAAACTGGTCCATCGCAAGAGAGCCATCAGCTTTTGAACAGCCCACAAATAATTCTTCAAAGAGATGGAAGAATTTGATAGGCTTAGTCAAGTAGTTGTATTTAGTTGTCTGTCATTAGAAGAAGCATGGTTAGAAATAAACAAACTTAACAATTCTTGTATGAATTATAACTCAAACTAGTGTGCAATCATAGAATAACTTACACCAAGTTTGTTTGCTTCCTTCTCCGATGGGTCAATGTTAAATTTGCATGATGTTGCATCAAAACCATAGCCACTTTTTCCTAAGGCTGCACAGATCCAACTCCATTTTTCCTTGCATAGCCTGAAATGCCGATGGACTTGGCTTCTGTTGACTCTAAGTCCAAGCTTGTCATTCAAAGCAGTAGCACACTGCTGGTGTTGTTGTTTCCTCCACTTGAAGGTGGTAGGTTTGTCCTTGCGGAGCGATATATACCACTCAAGCATGAACTGAGTGGCATCATCACTCCAAGTGATATACTTTTCACGAGAGCCACCTTCCTTGCTATTATCTTCAGTACGATTTCCCATACTGCATACATCATAGGAGAATTGTAAGTAAAACACTTCATATGAACAATGGTAGTCAGTTAATACAAAAAACAAAGATTGTAAGCAATATACGTTGGTAACTCATTCGCTGGTCATAACATCGTGGACATCTATGTTGTTTCTATCATTCCACATCTGATTGGCAATATCGTCACGCTTGGCTGCCCACTCACGTACATCAGCCCCTTTGTCAGTGACACGGTTACTACTCCTTGGTAGGCGAGCATACCACGTATCCTCATCGGAGACAAATTCATCATGTCCATCGTCCAATATCCAATTATGAAGGGCACAACAAGCGATAACCACCATTGCTTGGGCTTTCAAGGGTATGAATGGCTTATTCATAAGAATCTTGAAGCGGTTCTTAAGAGCACCAAAAGCTCGTTCAATTGTAGTTCGAAGTGAAGAATGACGATAGTTGAATAGCTCTTTTGGGCATTTTGGACCTTGAGGGCCACGAAACTCTTTTAGGTGATATCGAACACGACGATATGGCGGCAATATACCCGGCCTAGCAGCATATCCAGCATCAGCCAAAAAATATTTCCCTACAACCATCAATCATGTCATATATGAGCCTAATGTTATCTTCTTACAACAAGGCTAATTACGATTCTTTCAAAATGTTTAATTACCTTCTGGTATTTTAAGACCATTTGGGCGCGACAATGCATCTTGCAAGACAAGAGAATCATGAGCTGACCCCTCCCAACCTGATAGGATATATGTGAACCTAAGGTCAAAGTCGACAGCAGCCAATACGTTCTGTGTGGGGTATGACTTGCGGCCTCTAAACCTATCCACCTTCTTGGCTGGCACACTTGCCCTGATGTGTGTGCCGTCTAGTGCCCCAATACAGCCCTAAGTGCAGACAAAATAAAAACATCCGAGTGAAATAAACAAAAGTTAATGGAATATGAATTATTGTCTCTTGGTATTTAGAGTTACCTCAAAATATGGATAGAATTTGTTTGGGTTGCTGGTGATCTTAGTATGTGTATCGGTAGACCTGACATAAATGAGTTCTCGAGCTAACTCACACATGGCCCGCAACACAATATGAAAATACCTACTCACTGTCTCACCAGATCGCCAAAATGAGAATCCTACAGATGGAACTGAATGATGTTGTCCAACCTTCTTCAGAAACATTGCCACTTGCTCCTCTACTGAAACATGAAAGGTGTCAACTAGTAGTCCCTTGTTCTTAAGACGAGAACAGAGCCTGTAGAATAACTGACGGGGCATTCTCAATTGTTGTGTGCATATCCTATCTGAAGTGTCGATCAACCTAATTAATTCACTTGTTCTCCATACATCCCTATGGATCAGGGGCCCATACCGTACCCCTTTGCATTTACTTCTTTTACCATTTTTATTCCTCAACCAGACGAGGATCAAAACCAGAAGTATCACTACAGCCTTTTGCCTCAACAAGAAGCAATGCACATATTGCTGTCGATTGCTCTCCAT
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| CDS seq | ATGGAGAGCAATCGACAGCAATATGTGCATTGCTTCTTGTTGAGGCAAAAGGCTGTAGTGATACTTCTGGTTTTGATCCTCGTCTGGTTGAGGAATAAAAATGGTAAAAGAAGTAAATGCAAAGGGGTACGGTATGGGCCCCTGATCCATAGGGATGTATGGAGAACAAGTGAATTAATTAGGTTGATCGACACTTCAGATAGGATATGCACACAACAATTGAGAATGCCCCGTCAGTTATTCTACAGGCTCTGTTCTCGTCTTAAGAACAAGGGACTACTAGTTGACACCTTTCATGTTTCAGTAGAGGAGCAAGTGGCAATGTTTCTGAAGAAGGTTGGACAACATCATTCAGTTCCATCTGTAGGATTCTCATTTTGGCGATCTGGTGAGACAGTGAGTAGGTATTTTCATATTGTGTTGCGGGCCATGTGTGAGTTAGCTCGAGAACTCATTTATGTCAGGTCTACCGATACACATACTAAGATCACCAGCAACCCAAACAAATTCTATCCATATTTTGAGTGTTTTACTTACAATTCTCCTATGATTATGGGAAATCGTACTGAAGATAATAGCAAGGAAGGTGGCTCTCGTGAAAAGTATATCACTTGGAGTGATGATGCCACTCAGTTCATGCTTGAGTGGTATATATCGCTCCGCAAGGACAAACCTACCACCTTCAAGTGGAGGAAACAACAACACCAGCAGTGTGCTACTGCTTTGAATGACAAGCTTGGACTTAGAGTCAACAGAAGCCAAGTCCATCGGCATTTCAGGCTATGCAAGGAAAAATGGAGTTGGATCTGTGCAGCCTTAGGAAAAAGTGGCTATGGTTTTGATGCAACATCATGCAAATTTAACATTGACCCATCGGAGAAGGAAGCAAACAAACTTGGTGAATTAGCTAGCAGTACCATTAACGGGAGGCAATATAACTACGATCAACAAGAGCTAGCAGTACTGCACATATACACCCGGACCACAAGTCCACAACCCATCATCAAGGGCTAA
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| Protein seq | MESNRQQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRYGPLIHRDVWRTSELIRLIDTSDRICTQQLRMPRQLFYRLCSRLKNKGLLVDTFHVSVEEQVAMFLKKVGQHHSVPSVGFSFWRSGETVSRYFHIVLRAMCELARELIYVRSTDTHTKITSNPNKFYPYFECFTYNSPMIMGNRTEDNSKEGGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQQHQQCATALNDKLGLRVNRSQVHRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGELASSTINGRQYNYDQQELAVLHIYTRTTSPQPIIKG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_08G009060 | OsN22_08G009060_01 | Chr08 | 10260408 | 10263513 | - | NAM | ||
| CDS seq | ATGGAGAGCAATCGACAGCAATATGTGCATTGCTTCTTGTTGAGGCAAAAGGCTGTAGTGATACTTCTGGTTTTGATCCTCGTCTGGTTGAGGAATAAAAATGGTAAAAGAAGTAAATGCAAAGGGGTACGGTATGGGCCCCTGATCCATAGGGATGTATGGAGAACAAGTGAATTAATTAGGTTGATCGACACTTCAGATAGGATATGCACACAACAATTGAGAATGCCCCGTCAGTTATTCTACAGGCTCTGTTCTCGTCTTAAGAACAAGGGACTACTAGTTGACACCTTTCATGTTTCAGTAGAGGAGCAAGTGGCAATGTTTCTGAAGAAGGTTGGACAACATCATTCAGTTCCATCTGTAGGATTCTCATTTTGGCGATCTGGTGAGACAGTGAGTAGGTATTTTCATATTGTGTTGCGGGCCATGTGTGAGTTAGCTCGAGAACTCATTTATGTCAGGTCTACCGATACACATACTAAGATCACCAGCAACCCAAACAAATTCTATCCATATTTTGAGTGTTTTACTTACAATTCTCCTATGATTATGGGAAATCGTACTGAAGATAATAGCAAGGAAGGTGGCTCTCGTGAAAAGTATATCACTTGGAGTGATGATGCCACTCAGTTCATGCTTGAGTGGTATATATCGCTCCGCAAGGACAAACCTACCACCTTCAAGTGGAGGAAACAACAACACCAGCAGTGTGCTACTGCTTTGAATGACAAGCTTGGACTTAGAGTCAACAGAAGCCAAGTCCATCGGCATTTCAGGCTATGCAAGGAAAAATGGAGTTGGATCTGTGCAGCCTTAGGAAAAAGTGGCTATGGTTTTGATGCAACATCATGCAAATTTAACATTGACCCATCGGAGAAGGAAGCAAACAAACTTGGTGAATTAGCTAGCAGTACCATTAACGGGAGGCAATATAACTACGATCAACAAGAGCTAGCAGTACTGCACATATACACCCGGACCACAAGTCCACAACCCATCATCAAGGGCTAA
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| Protein seq | MESNRQQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRYGPLIHRDVWRTSELIRLIDTSDRICTQQLRMPRQLFYRLCSRLKNKGLLVDTFHVSVEEQVAMFLKKVGQHHSVPSVGFSFWRSGETVSRYFHIVLRAMCELARELIYVRSTDTHTKITSNPNKFYPYFECFTYNSPMIMGNRTEDNSKEGGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQQHQQCATALNDKLGLRVNRSQVHRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGELASSTINGRQYNYDQQELAVLHIYTRTTSPQPIIKG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0106900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11820 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0106900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018420 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007090 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007140 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006180 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0026100 | SBH | 0.030745 | 0 | 0.600424 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007090 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0154900 | RBH | 0 | 0.009399 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006010 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001540 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005650 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G018910 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
