Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsGoSa_08g0011320 | OGI:08042450 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:15295418-15299687 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ctaatcgtggactgaaccaggccatccagcacctacaaacgtaactcgttcatcccaaccaataacggtgagcacattccttgaagtctcgttgtgacggttcccgtgtacggttgaagttgaggaccgcacgagaagaggtatgtgcatctcatcaactgcaccaactgcatcacagaaaggaaggcaggcaggctcttgccctagacggtaatgttgagcgaagttgtttggatcaacacatttgatgatgtcggctgccattgcatgcacaacattcaataccttgtgaaaatatctatttaccgtggcattgcaacgaaccatcctattattgatagccctcacgaaatagccacctgccatagagtacagaaacattccaattccttccatagggcatacctcataggtaccatgcagatggtacctgttggtgagtagattgtagagagcatgaatctagtccactctcatgcgaaacatgttgtggcactgctatgggttgcccatctccacaatccattttgttccgtactactgagggacacgtcttggagctcttatatgcacattcctttgaaaagaagcagccaacaactcaataattgtttcatcctcttcaccagtgtatctatcttgagactctgaggtgttctttgaactgatgctcatcctcctaattcatcaaataagcaaatagaggttgttatgcatgttatgatcagtgtcatataaaactagttcatttgctctaaaaaaaagttaattagaaacacgtaaataattaaactgaagcaaacaataaatttaggttagaatagtaatgaagacaggaaatttggttagttcgtgtctgcacaagttcagctcaaacgttaataaattacaaaatattaaatttatattaccataagcacaacaaataaattgtagcacaaatacagaactaaataaattattccattaaaccaagcaactcaaatatcaaatgcaaTGtgtgccacattattcatacatacatacaaataaacatgcatacaacgtttatcacaagtgttgattttaaaatcgaacacattattcaactatcatcacgatggaataaaaaggttgcttgagcacacttgagctttagcctcctgcagcagcaaacatcagcttttgcacttaatagcagctagcactcaactgcaaactgcagctcacaacaacagcacacacctcacagcatcacacacagcacatagcagcacactcccatctgcttcggcatacaacacacagcacacaacgctcccagcagcagcaacactaccagctccatcccccatcagcacagtattgcaccatcagctcccccagtgccatcatccccagggtcacccccatcgcccccatcaaaccctccaccaccaggtggaaaccaacctcctgagcatgatggtagagggaaaacctccaccattaggaaacttcatggcatagtggaagagaatgtaatactcacgcatctcctgagtaatggcatcaccaaagaataacttgtaaaagtaggggtcacacttgatcagcacaatgcaagccctagcactcctcacctctcactcccgctgcttttgcgctttgctctcactggacttaaccctaagatttgcgagcctctacaaagcctcacctgtggagtcactgtgggtcTttttggaacccctagatccactactcggtgttgccacacTtttgtccctacgcctgataagccttgatggtggctcagatgatggtggcgactccgacaagttgacaaggtgctaaacatcaatgacaccagggttggctggcagcagctgctattcaggttcagctacaggaacacttgaacggttgccgacaacagtcctccctctgaaaacagcatggtgttcagaaatgaatctgacatgaccacgcataaatgatcttgcccctctcctcatctgtatgtgagaaaaagagatatataagaggttgaatatgaagcacaattgcaaatgtattgcataaatgactgccgccgacatttgcatatccaatagcataatggagcaaaattgtgttgcagcaagcaaggacaaagtagacataccaaagttaaaaaaaacatcaactacacagcagttgtgcatgtttcttttgcataaccagaacaaaactgaaggcacaaacatgaatcacccaacagcagcaagcaaatatgtgtaaaTaaaccatagaatccatattgttgaagcaacaagctcacagtagcagcatgtgcagaccatacacatatgcagtgtgcagaccatacacatatgccacaagaatgtacatatgccacaaagtcttaaagtgtaattaaatagggaggtaatccattgacctatgttgcatttgcaaaatcaccccataatgaggagtgaaacaagatctaaacattgtgaaaagcattcaataatgcatagcatacagctagttacagcagcagctaacttaagaataaagtttgcaaagataaaatgcaagcagcagcaaacagcaagcaagcacacttcatggcatttctatatgacagtagaagaaaaacgaccaaaggcatgcaaaaattctttaggtgtactatgcataacaacaacagcagacaacaaatattgttcagtggtaatgcatttcaatattttaaagtgcatgtaccttgcatcagtaatatgtaatatggtttgtttgtattaaatacatcacaagatggagatgtaaactaaagatatgaggttttttagccaatcacaaaatgctctaatagtcaatgacaataaaatataactatagctaaatatgggagcaaccactattgtaggcaaagaaggtgatagttaaaatataccatgcagtgagcagcaggtgttgtacatgtgttcatgaccttgtataaattaattgagctcttgcatgtactctattgcataataattaattgaaagtagtgctacgtattattcaaaagcaaatttggatttgctaagttatgaagaccaattgtactctaattggaagtactatatcatatttcattaaaaaaatagcaaatttatcatctatgatggctttaggttttgaactcatataaatgttttagttttatgtccctgtagattctcaaataatgctactttcatttatcataagcatctacatttttgtatgagacaacataaggaaacctatgagatcataatgtactaaccttggaaacacaatgtgatgtttccatcaatataattaccatgatctacgatgactttattcattgcaaaatctatatgtacttcctccaatgaattctacatttctcgatcacacatacctaacttaaaatttgagtacatctaattaaactatgtattctactctgccacagccaaaaattagttaacagctacatttaatcctatgttgagagatccaaatatgatggttttttctacccttatgtgaaaatgagttgtcattacagcaaaaaggagtactgtgaggacttaccccttccattgattcccaccactctgggctggcgccgatgctgccggtgtaggggttccttcctagcccagttgccatagattccagccatgtccatgtctagaatcggcggcggcaaccatcctagaaattcttcacctgctgcctgctgcctagtgacctgctttcctaccttggccagcatctaagcttgcgagttggcatacccctgagctttggggcaagacgatgtgatgttgcgagctgcaatttcctccatgtagctctctaggaacgcttgcagttcgtccttagtccagtgagtgtgccctccgccagccatctaaccacacaagttgagcaaacagaaacaaacctaagaaactcaaatctaggtagtagttacctttcttagtttgtcggatttgaggaggtcccaatccaacgagcgcacaaccttctccggcgtgaggcagcggatgaactaacagactgcttcagggggcttggcagctacggatgagagcgcacgagcgatgagctccacatcatcttctgcagtggctccagacacaacgtcggagatgtacaacttgctagaatcttggctcgattccaggtcggctgaaacctctcccaacttgccggtgtcaatgggcgacactaaagagggggaggtacagaggagaggttgaggggatggacattttctcttgattcctcttgctgccat
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CDS seq | atgctggccaaggtaggaaagcaggtcactaggcagcaggcagcaggtgaagaatttctaggatggttgccgccgccgattctagacatggacatggctggaatctatggcaactgggctaggaaggaacccctacaccggcagcatcggcgccagcccagagtgatgaggagaggggcaagatcatttatgcgtggtcatgtcagattcatttctgaacaccatgctgttttcagagggaggactgttgtcggcaaccgttcaagtgttcctctgaacctgaatagcagctgctgccagccaaccctggtgtcattgatgtttagcaccttgtcaacttgtcggagtcgccaccatcatctgagccaccatcaaggcttatcaggcgtagggacaaaAgtgtggcaacaccgagtagtggatctaggggttccaaaaAgacccacagtgactccacaggtgaggctttgtagaggctcgcaaatcttagggttaagtccagtgagagcaaagcgcaaaagcagcgggagtgagaggttttccctctaccatcatgctcaggaggttggtttccacctggtggtggagggtttgatgggggcgatgggggtgaccctggggatgatggcactgggggagctgatggtgcaatactgtgctgatgggggatggagctggaggatgagcatcagttcaaagaacacctcagagtctcaagatagatacactggtgaagaggatgaaacaattattgagttgttggctgcttcttttcaaaggaatattcatgctctctacaatctactcaccaacaggtaccatctgcatggtacctatgaggtatgccctatggaaggaattggaatgtttctgtactctatggcaggtggctatttcgtgagggctatcaataataggatggttcgttgcaatgccacggtaaatagatattttcacaaggtattgaatgttgtgcatgcaatggcagccgacatcatcaaatgtgttgatccaaacaacttcgctcaacattaccgtctagggcaagagcctgcctgccttcctttctgtgatgcagttggtgcagttgatgagatgcacatacctcttctcgtgcggtcctcaacttcaaccgtacacgggaaccgtcacaacgagacttcaaggaatgtgctcaccgttattggttgggatgaacgagttacgtttgtaggtgctggatggcctggttcagtccacgattag
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Protein seq | MLAKVGKQVTRQQAAGEEFLGWLPPPILDMDMAGIYGNWARKEPLHRQHRRQPRVMRRGARSFMRGHVRFISEHHAVFRGRTVVGNRSSVPLNLNSSCCQPTLVSLMFSTLSTCRSRHHHLSHHQGLSGVGTKVWQHRVVDLGVPKRPTVTPQVRLCRGSQILGLSPVRAKRKSSGSERFSLYHHAQEVGFHLVVEGLMGAMGVTLGMMALGELMVQYCADGGWSWRMSISSKNTSESQDRYTGEEDETIIELLAASFQRNIHALYNLLTNRYHLHGTYEVCPMEGIGMFLYSMAGGYFVRAINNRMVRCNATVNRYFHKVLNVVHAMAADIIKCVDPNNFAQHYRLGQEPACLPFCDAVGAVDEMHIPLLVRSSTSTVHGNRHNETSRNVLTVIGWDERVTFVGAGWPGSVHD |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsGoSa_08g0011320 | OsGoSa_08g0011320.02 | Chr08 | 15295418 | 15299159 | - | NAM | ||
CDS seq | atgctggccaaggtaggaaagcaggtcactaggcagcaggcagcaggtgaagaatttctaggatggttgccgccgccgattctagacatggacatggctggaatctatggcaactgggctaggaaggaacccctacaccggcagcatcggcgccagcccagagtgatgaggagaggggcaagatcatttatgcgtggtcatgtcagattcatttctgaacaccatgctgttttcagagggaggactgttgtcggcaaccgttcaagtgttcctctgaacctgaatagcagctgctgccagccaaccctggtgtcattgatgtttagcaccttgtcaacttgtcggagtcgccaccatcatctgagccaccatcaaggcttatcaggcgtagggacaaaAgtgtggcaacaccgagtagtggatctaggggttccaaaaAgacccacagtgactccacaggtgaggctttgtagaggctcgcaaatcttagggttaagtccagtgagagcaaagcgcaaaagcagcgggagtgagaggttttccctctaccatcatgctcaggaggttggtttccacctggtggtggagggtttgatgggggcgatgggggtgaccctggggatgatggcactgggggagctgatggtgcaatactgtgctgatgggggatggagctggaggatgagcatcagttcaaagaacacctcagagtctcaagatagatacactggtgaagaggatgaaacaattattgagttgttggctgcttcttttcaaaggaatattcatgctctctacaatctactcaccaacaggtaccatctgcatggtacctatgaggtatgccctatggaaggaattggaatgtttctgtactctatggcaggtggctatttcgtgagggctatcaataataggatggttcgttgcaatgccacggtaaatagatattttcacaaggtattgaatgttgtgcatgcaatggcagccgacatcatcaaatgtgttgatccaaacaacttcgctcaacattaccgtctagggcaagagcctgcctgccttcctttctgtgatgcagttggtgcagttgatgagatgcacatacctcttctcgtgcggtcctcaacttcaaccgtacacgggaaccgtcacaacgagacttcaaggaatgtgctcaccgttattggttgggatgaacgagttacgtttgtaggtgctggatggcctggttcagtccacgattag
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Protein seq | MLAKVGKQVTRQQAAGEEFLGWLPPPILDMDMAGIYGNWARKEPLHRQHRRQPRVMRRGARSFMRGHVRFISEHHAVFRGRTVVGNRSSVPLNLNSSCCQPTLVSLMFSTLSTCRSRHHHLSHHQGLSGVGTKVWQHRVVDLGVPKRPTVTPQVRLCRGSQILGLSPVRAKRKSSGSERFSLYHHAQEVGFHLVVEGLMGAMGVTLGMMALGELMVQYCADGGWSWRMSISSKNTSESQDRYTGEEDETIIELLAASFQRNIHALYNLLTNRYHLHGTYEVCPMEGIGMFLYSMAGGYFVRAINNRMVRCNATVNRYFHKVLNVVHAMAADIIKCVDPNNFAQHYRLGQEPACLPFCDAVGAVDEMHIPLLVRSSTSTVHGNRHNETSRNVLTVIGWDERVTFVGAGWPGSVHD
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsGoSa_08g0011320 | OsGoSa_08g0011320.01 | Chr08 | 15296527 | 15299687 | - | NAM | ||
CDS seq | atggcagcaagaggaatcaagagaaaatgtccatcccctcaacctctcctctgtacctccccctctttagtgtcgcccattgacaccggcaagttgggagaggtttcagccgacctggaatcgagccaagattctagcaagttgtacatctccgacgttgtgtctggagccactgcagaagatgatgtggagctcatcgctcgtgcgctctcatccgtagctgccaagccccctgaagcattcatccgctgcctcacgccggagaaggttgtgcgctcgttggattgggacctcctcaaatccgacaaactaagaaagatggctggcggagggcacactcactggactaaggacgaactgcaagcgttcctagagagctacatggaggaaattgcagctcgcaacatcacatcgtcttgccccaaagctcaggggtatgccaactcgcaagcttag
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Protein seq | MAARGIKRKCPSPQPLLCTSPSLVSPIDTGKLGEVSADLESSQDSSKLYISDVVSGATAEDDVELIARALSSVAAKPPEAFIRCLTPEKVVRSLDWDLLKSDKLRKMAGGGHTHWTKDELQAFLESYMEEIAARNITSSCPKAQGYANSQA |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
A5 | Chr08 | 15297393 | 15298995 | - | OsGoSa_08g0011320.01 | OsGoSa_08g0011320.01,OsGoSa_08g0011320.02 | All |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0106900 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24330 | RBH | 0.000000 | 0.119607 | 0.000000 |
Nipponbare | IRGSP 1.0 | RAP-db | Os08g0106900 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011770 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011900 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011960 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011810 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011700 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0228600 | RBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011790 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011300 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011460 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012110 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011390 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011570 | RBH | 0.0 | 0.0 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011540 | RBH | 0.0 | 0.0 | 0.0 |