Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0575750 | OGI:07004740 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:23289173-23291356 | ||||||||
| Gene Symbol | YK35, - | ||||||||||
| DNA seq | ATTAAAAATAGGAACTCTAAAAGTGCATAATTGTTTGCATTCACTAACAACAAAATACAAAGGATTACCGAGCCCACTGACAAGTATCGGGTACAAGCTTCAGAATCATCTCCCGTCCGAGAGAACCGAAGCAGATGACATTGTACCAACACTATTATCTAACAAAGAGGACCACACGGGTAAACTATGTGAACCAACCCCATTCTGTAGCATCAACTCCATCATGTTATAGCTCATGTGCGTCGGTGATAGCTCTGGTGCTGGAAGCATACCATCGAGGTACTTCACAACTTTGTCCATGCTTGGCCTTGCCTTGGGCAATGGATGTGAGCACATTAGTCCTAGTTTCAAAACAAGATTCACCTCCTCGAAGCTGAACCTCCCTGCAAGCCGGGGATCCACCACGTTAAGGATGGATCCGCTAAGAAAATGCTTCAGCACCCAATCTATTAATAGAATCTCGTTGCTATCGCTTTCCCCAATCGGCCTTCGTCCACAGGTGACCTCGAGGAGGAACACACCGAACGCGAACACGTCCGTCAACGGTGTTGCCTTCCCCGTGTGCATGAGCTCTGGGGCAATGTAACCCATAGTTCCTACCACGTATGTGGTCTTTGCATCGGCTCCATGATCCCGTAGCCTTGACAAGCCGAAATCCCCTAATAGTCCATTCATCTCGCTGTCTAGAAGAACATTGCTTGCCTTGACATCTCGATGGATCACTACTTGCTCCCAATCCTTGTGTAGGTACGATAATGCCGACGCAACACCTTTGATGATGTGGATCCTCTTGGGCCAACAGAGTGTGGTTGATGTAGCATTATCATGCAAACACTTGTCAAGACTACCATTTGTCTTGTAGTCATAAACAAGGAGAAGTTCTCCCTTGCGCCGACAGTAACCCAGGAGCCGCACGATGTTCCGGTGTCGGATACGGCCGATGCTTACCACCTCAGCAATAAACTCTCTCATCCCTTGTCTTGAATTGTGTGACACCCGTTTCACCGCTATCTCTGTATTGGACACGGGAAGCACACCCTTGTACACGCTCCCAAACCCTCCCGCACCGAGTAGGTTCTTGTCTGTGAATCCCTGCGTAGCATGAAACAGATCCTTGTATGTGAACCGATGCGGACCAAACTCAACCTCCCAATCTTCGCGCACCTCCGCAAACTGCCGGTGCCACCTTCTCACGAAGAAGACACCCAGAACAAACGCAACAAGAAACAGTAGTGCACTGGCAATCGGCAACACAACATACAGCATTACTGACCGACGTGTAGGACCCACTCGTGGCACCTTGGGCAGCATGGAGAAGTCCAGTGAGGGAGCAGCTCCGCCGTCGAAGCTGAAGCTCCATCCGAGGACGTAGTGGTGCGTGAACACGACGCCCGTCGCCGACGAGAAGCCGACGTACATCTCCTCGGCCATGACCGTGGAGAGGTCGATGGCTTGGGAGAGCAGAGGCTTCTTGGGCTTGGGCACTTGCACGGGAGACAGCGTCACGTTGAGCTGCTTGGCCTGGCCGTCGTAGTCCACCCACACCTGCATTGGCTTCTGGCTGTTGAGCTGCAGGCTCCGGAACGCGCCGTCGCCGTCGACATAGTAGCCGGCGGTCTTCGCCTGCAGCGACCTGAGGCTATTGACGTCGACGCCGACGTGGTTGCTGTCGATGTCGCCGAACTCGGGGTTCGTGATGATGTCGAGCTCGACGGCGAACACGTGGTTGCTCGGCTTGCCGTCGTCGGCCATGCTGAGGAGGCCCAGGTACTGGCCGGCGTTCGCCGTGGAGAGGTTCTTGGTCGGGGAGACCACGAACGCGAGCCCATGGTCGACGTTGTTCCTGAACCTGGGGTCGTCGGACACGATGGCGAACACGAACGACGTCGAGAAGGACCGCACGGTGGCGGCGGCGGACGACGACGTGTTGAGGAAGCGGAGAGGCGCAGGGTGGAACGCGTGGGCTTTCGTTTGGTACGTGGCGTTGGTGAGCGCGAGGAGCCCGGTCGGCGTGACGGCGGCGAGGCCGTCCATGGTGAGGTCCTCCGCCGTGAAGCCGTGGTGGACGAACCGGCCATCGCTGGCTGCAGGGTTGGCCACCGCCGCTCCAATGTTCACGCTAAGGCAGTGGATGAACACGATATTGATGAACACAACGAGCATCGTTTTGCTGTGGAGTTGCAT
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| CDS seq | ATGCAACTCCACAGCAAAACGATGCTCGTTGTGTTCATCAATATCGTGTTCATCCACTGCCTTAGCGTGAACATTGGAGCGGCGGTGGCCAACCCTGCAGCCAGCGATGGCCGGTTCGTCCACCACGGCTTCACGGCGGAGGACCTCACCATGGACGGCCTCGCCGCCGTCACGCCGACCGGGCTCCTCGCGCTCACCAACGCCACGTACCAAACGAAAGCCCACGCGTTCCACCCTGCGCCTCTCCGCTTCCTCAACACGTCGTCGTCCGCCGCCGCCACCGTGCGGTCCTTCTCGACGTCGTTCGTGTTCGCCATCGTGTCCGACGACCCCAGGTTCAGGAACAACGTCGACCATGGGCTCGCGTTCGTGGTCTCCCCGACCAAGAACCTCTCCACGGCGAACGCCGGCCAGTACCTGGGCCTCCTCAGCATGGCCGACGACGGCAAGCCGAGCAACCACGTGTTCGCCGTCGAGCTCGACATCATCACGAACCCCGAGTTCGGCGACATCGACAGCAACCACGTCGGCGTCGACGTCAATAGCCTCAGGTCGCTGCAGGCGAAGACCGCCGGCTACTATGTCGACGGCGACGGCGCGTTCCGGAGCCTGCAGCTCAACAGCCAGAAGCCAATGCAGGTGTGGGTGGACTACGACGGCCAGGCCAAGCAGCTCAACGTGACGCTGTCTCCCGTGCAAGTGCCCAAGCCCAAGAAGCCTCTGCTCTCCCAAGCCATCGACCTCTCCACGGTCATGGCCGAGGAGATGTACGTCGGCTTCTCGTCGGCGACGGGCGTCGTGTTCACGCACCACTACGTCCTCGGATGGAGCTTCAGCTTCGACGGCGGAGCTGCTCCCTCACTGGACTTCTCCATGCTGCCCAAGGTGCCACGAGTGGGTCCTACACGTCGGTCAGTAATGCTGTATGTTGTGTTGCCGATTGCCAGTGCACTACTGTTTCTTGTTGCGTTTGTTCTGGGTGTCTTCTTCGTGAGAAGGTGGCACCGGCAGTTTGCGGAGGTGCGCGAAGATTGGGAGGTTGAGTTTGGTCCGCATCGGTTCACATACAAGGATCTGTTTCATGCTACGCAGGGATTCACAGACAAGAACCTACTCGGTGCGGGAGGGTTTGGGAGCGTGTACAAGGGTGTGCTTCCCGTGTCCAATACAGAGATAGCGGTGAAACGGGTGTCACACAATTCAAGACAAGGGATGAGAGAGTTTATTGCTGAGGTGGTAAGCATCGGCCGTATCCGACACCGGAACATCGTGCGGCTCCTGGGTTACTGTCGGCGCAAGGGAGAACTTCTCCTTGTTTATGACTACAAGACAAATGGTAGTCTTGACAAGTGTTTGCATGATAATGCTACATCAACCACACTCTGTTGGCCCAAGAGGATCCACATCATCAAAGGTGTTGCGTCGGCATTATCGTACCTACACAAGGATTGGGAGCAAGTAGTGATCCATCGAGATGTCAAGGCAAGCAATGTTCTTCTAGACAGCGAGATGAATGGACTATTAGGGGATTTCGGCTTGTCAAGGCTACGGGATCATGGAGCCGATGCAAAGACCACATACGTGGTAGGAACTATGGGTTACATTGCCCCAGAGCTCATGCACACGGGGAAGGCAACACCGTTGACGGACGTGTTCGCGTTCGGTGTGTTCCTCCTCGAGGTCACCTGTGGACGAAGGCCGATTGGGGAAAGCGATAGCAACGAGATTCTATTAATAGATTGGGTGCTGAAGCATTTTCTTAGCGGATCCATCCTTAACGTGGTGGATCCCCGGCTTGCAGGGAGGTTCAGCTTCGAGGAGGTGAATCTTGTTTTGAAACTAGGACTAATGTGCTCACATCCATTGCCCAAGGCAAGGCCAAGCATGGACAAAGTTGTGAAGTACCTCGATGGTATGCTTCCAGCACCAGAGCTATCACCGACGCACATGAGCTATAACATGATGGAGTTGATGCTACAGAATGGGGTTGGTTCACATAGTTTACCCGTGTGGTCCTCTTTGTTAGATAATAGTGTTGGTACAATGTCATCTGCTTCGGTTCTCTCGGACGGGAGATGA
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| Protein seq | MQLHSKTMLVVFINIVFIHCLSVNIGAAVANPAASDGRFVHHGFTAEDLTMDGLAAVTPTGLLALTNATYQTKAHAFHPAPLRFLNTSSSAAATVRSFSTSFVFAIVSDDPRFRNNVDHGLAFVVSPTKNLSTANAGQYLGLLSMADDGKPSNHVFAVELDIITNPEFGDIDSNHVGVDVNSLRSLQAKTAGYYVDGDGAFRSLQLNSQKPMQVWVDYDGQAKQLNVTLSPVQVPKPKKPLLSQAIDLSTVMAEEMYVGFSSATGVVFTHHYVLGWSFSFDGGAAPSLDFSMLPKVPRVGPTRRSVMLYVVLPIASALLFLVAFVLGVFFVRRWHRQFAEVREDWEVEFGPHRFTYKDLFHATQGFTDKNLLGAGGFGSVYKGVLPVSNTEIAVKRVSHNSRQGMREFIAEVVSIGRIRHRNIVRLLGYCRRKGELLLVYDYKTNGSLDKCLHDNATSTTLCWPKRIHIIKGVASALSYLHKDWEQVVIHRDVKASNVLLDSEMNGLLGDFGLSRLRDHGADAKTTYVVGTMGYIAPELMHTGKATPLTDVFAFGVFLLEVTCGRRPIGESDSNEILLIDWVLKHFLSGSILNVVDPRLAGRFSFEEVNLVLKLGLMCSHPLPKARPSMDKVVKYLDGMLPAPELSPTHMSYNMMELMLQNGVGSHSLPVWSSLLDNSVGTMSSASVLSDGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0575750 | Os07t0575750-00 | Chr07 | 23289173 | 23291356 | - | irgsp1_rep | ||
| CDS seq | ATGCAACTCCACAGCAAAACGATGCTCGTTGTGTTCATCAATATCGTGTTCATCCACTGCCTTAGCGTGAACATTGGAGCGGCGGTGGCCAACCCTGCAGCCAGCGATGGCCGGTTCGTCCACCACGGCTTCACGGCGGAGGACCTCACCATGGACGGCCTCGCCGCCGTCACGCCGACCGGGCTCCTCGCGCTCACCAACGCCACGTACCAAACGAAAGCCCACGCGTTCCACCCTGCGCCTCTCCGCTTCCTCAACACGTCGTCGTCCGCCGCCGCCACCGTGCGGTCCTTCTCGACGTCGTTCGTGTTCGCCATCGTGTCCGACGACCCCAGGTTCAGGAACAACGTCGACCATGGGCTCGCGTTCGTGGTCTCCCCGACCAAGAACCTCTCCACGGCGAACGCCGGCCAGTACCTGGGCCTCCTCAGCATGGCCGACGACGGCAAGCCGAGCAACCACGTGTTCGCCGTCGAGCTCGACATCATCACGAACCCCGAGTTCGGCGACATCGACAGCAACCACGTCGGCGTCGACGTCAATAGCCTCAGGTCGCTGCAGGCGAAGACCGCCGGCTACTATGTCGACGGCGACGGCGCGTTCCGGAGCCTGCAGCTCAACAGCCAGAAGCCAATGCAGGTGTGGGTGGACTACGACGGCCAGGCCAAGCAGCTCAACGTGACGCTGTCTCCCGTGCAAGTGCCCAAGCCCAAGAAGCCTCTGCTCTCCCAAGCCATCGACCTCTCCACGGTCATGGCCGAGGAGATGTACGTCGGCTTCTCGTCGGCGACGGGCGTCGTGTTCACGCACCACTACGTCCTCGGATGGAGCTTCAGCTTCGACGGCGGAGCTGCTCCCTCACTGGACTTCTCCATGCTGCCCAAGGTGCCACGAGTGGGTCCTACACGTCGGTCAGTAATGCTGTATGTTGTGTTGCCGATTGCCAGTGCACTACTGTTTCTTGTTGCGTTTGTTCTGGGTGTCTTCTTCGTGAGAAGGTGGCACCGGCAGTTTGCGGAGGTGCGCGAAGATTGGGAGGTTGAGTTTGGTCCGCATCGGTTCACATACAAGGATCTGTTTCATGCTACGCAGGGATTCACAGACAAGAACCTACTCGGTGCGGGAGGGTTTGGGAGCGTGTACAAGGGTGTGCTTCCCGTGTCCAATACAGAGATAGCGGTGAAACGGGTGTCACACAATTCAAGACAAGGGATGAGAGAGTTTATTGCTGAGGTGGTAAGCATCGGCCGTATCCGACACCGGAACATCGTGCGGCTCCTGGGTTACTGTCGGCGCAAGGGAGAACTTCTCCTTGTTTATGACTACAAGACAAATGGTAGTCTTGACAAGTGTTTGCATGATAATGCTACATCAACCACACTCTGTTGGCCCAAGAGGATCCACATCATCAAAGGTGTTGCGTCGGCATTATCGTACCTACACAAGGATTGGGAGCAAGTAGTGATCCATCGAGATGTCAAGGCAAGCAATGTTCTTCTAGACAGCGAGATGAATGGACTATTAGGGGATTTCGGCTTGTCAAGGCTACGGGATCATGGAGCCGATGCAAAGACCACATACGTGGTAGGAACTATGGGTTACATTGCCCCAGAGCTCATGCACACGGGGAAGGCAACACCGTTGACGGACGTGTTCGCGTTCGGTGTGTTCCTCCTCGAGGTCACCTGTGGACGAAGGCCGATTGGGGAAAGCGATAGCAACGAGATTCTATTAATAGATTGGGTGCTGAAGCATTTTCTTAGCGGATCCATCCTTAACGTGGTGGATCCCCGGCTTGCAGGGAGGTTCAGCTTCGAGGAGGTGAATCTTGTTTTGAAACTAGGACTAATGTGCTCACATCCATTGCCCAAGGCAAGGCCAAGCATGGACAAAGTTGTGAAGTACCTCGATGGTATGCTTCCAGCACCAGAGCTATCACCGACGCACATGAGCTATAACATGATGGAGTTGATGCTACAGAATGGGGTTGGTTCACATAGTTTACCCGTGTGGTCCTCTTTGTTAGATAATAGTGTTGGTACAATGTCATCTGCTTCGGTTCTCTCGGACGGGAGATGA
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| Protein seq | MQLHSKTMLVVFINIVFIHCLSVNIGAAVANPAASDGRFVHHGFTAEDLTMDGLAAVTPTGLLALTNATYQTKAHAFHPAPLRFLNTSSSAAATVRSFSTSFVFAIVSDDPRFRNNVDHGLAFVVSPTKNLSTANAGQYLGLLSMADDGKPSNHVFAVELDIITNPEFGDIDSNHVGVDVNSLRSLQAKTAGYYVDGDGAFRSLQLNSQKPMQVWVDYDGQAKQLNVTLSPVQVPKPKKPLLSQAIDLSTVMAEEMYVGFSSATGVVFTHHYVLGWSFSFDGGAAPSLDFSMLPKVPRVGPTRRSVMLYVVLPIASALLFLVAFVLGVFFVRRWHRQFAEVREDWEVEFGPHRFTYKDLFHATQGFTDKNLLGAGGFGSVYKGVLPVSNTEIAVKRVSHNSRQGMREFIAEVVSIGRIRHRNIVRLLGYCRRKGELLLVYDYKTNGSLDKCLHDNATSTTLCWPKRIHIIKGVASALSYLHKDWEQVVIHRDVKASNVLLDSEMNGLLGDFGLSRLRDHGADAKTTYVVGTMGYIAPELMHTGKATPLTDVFAFGVFLLEVTCGRRPIGESDSNEILLIDWVLKHFLSGSILNVVDPRLAGRFSFEEVNLVLKLGLMCSHPLPKARPSMDKVVKYLDGMLPAPELSPTHMSYNMMELMLQNGVGSHSLPVWSSLLDNSVGTMSSASVLSDGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0575750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g38820 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0575600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020590 | SBH | 0.0 | 0.0 | 1.944079 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0020550 | SBH | 0.208587 | 0.000000 | 0.521998 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020480 | RBH | 0.118191 | 0.528161 | 1.504797 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001790 | SBH | 0.008926 | 0.007383 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001800 | RBH | 6.989861 | 2.384900 | 3.853860 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0380700 | RBH | 0 | 0.0053645 | 0.0191415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0020880 | RBH | 0.077602 | 0.166119 | 0.235651 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0393700 | RBH | 0.008728 | 0.004019 | 0.012213 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001790 | SBH | 0.096715 | 0.031098 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020340 | SBH | 0.305669 | 1.843393 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001890 | SBH | 1.448470 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020460 | SBH | 0.034479 | 0.0 | 0.455765 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0020190 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G020110 | RBH | 0.140949 | 0.0 | 1.207232 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0020180 | SBH | 0.000000 | 0.706915 | 0.527977 |
