Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0550900 | OGI:04082470 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:27595492-27596105 | ||||||||
| Gene Symbol | TIP5;1, OsTIP5;1 | ||||||||||
| DNA seq | TCACCATGCCCTCGATCTCGCTAATTCCGGCGATGGCGTGCGTCGGGATAGCCTGCGAATTAGCAAGCCCGATTCACTTAGCTCAAGTGCGAAGTACAAAGCACAACAACGTGGCAGCATGATGGAAACCAACCTGTCCGTGGGTGGAGAACTGCAGAGCAGACACGCGACGGACGCGCCGAGCAGCTGAGCGACCCAGTAGAAGATGCCGGTGAGGATGGTGATGTGGCCACCGACGGCGAGGCCGAAGGTGACAACGGGGTTCAAGTGGCCACCGGAGATGTTGGCGGCCATGGAAACTCCGACGAACAGCGCGAAGGCATGGGCTATGGCGATCGCCACCAGACCAGCTGGGTCTAGCGCGCCGCCCTTTGTCAGTTGCCCTGCACAACAAAGATTTAGATGAGAAACATAGAATGATCACTGTGCTAAGTGGTACAAGCAGAGTTGGGATGGAAGTTTTTTGAAACATAAATAAGGAGCTCACCGTAGGCAATGGCGGAGCCGACGCCGGCGAACACAAAGAGGAGTGTGGCAATGAACTCCGCGACATAGGCCTTGATGGACGAGGCACTGAAAGAGTCGCCGCAGCTTCCAAATGCAAGCTTCACCAT
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| CDS seq | ATGGTGAAGCTTGCATTTGGAAGCTGCGGCGACTCTTTCAGTGCCTCGTCCATCAAGGCCTATGTCGCGGAGTTCATTGCCACACTCCTCTTTGTGTTCGCCGGCGTCGGCTCCGCCATTGCCTACGGGCAACTGACAAAGGGCGGCGCGCTAGACCCAGCTGGTCTGGTGGCGATCGCCATAGCCCATGCCTTCGCGCTGTTCGTCGGAGTTTCCATGGCCGCCAACATCTCCGGTGGCCACTTGAACCCCGTTGTCACCTTCGGCCTCGCCGTCGGTGGCCACATCACCATCCTCACCGGCATCTTCTACTGGGTCGCTCAGCTGCTCGGCGCGTCCGTCGCGTGTCTGCTCTGCAGTTCTCCACCCACGGACAGGCTATCCCGACGCACGCCATCGCCGGAATTAGCGAGATCGAGGGCATGGTGA
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| Protein seq | MVKLAFGSCGDSFSASSIKAYVAEFIATLLFVFAGVGSAIAYGQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPVVTFGLAVGGHITILTGIFYWVAQLLGASVACLLCSSPPTDRLSRRTPSPELARSRAW |
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| Function | Aquaporin TIP2-2 [UniProtKB/Swiss-Prot:Q9ATL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0550900 | Os04t0550900-00 | Chr04 | 27595492 | 27596105 | - | irgsp1_rep | ||
| CDS seq | ATGGTGAAGCTTGCATTTGGAAGCTGCGGCGACTCTTTCAGTGCCTCGTCCATCAAGGCCTATGTCGCGGAGTTCATTGCCACACTCCTCTTTGTGTTCGCCGGCGTCGGCTCCGCCATTGCCTACGGGCAACTGACAAAGGGCGGCGCGCTAGACCCAGCTGGTCTGGTGGCGATCGCCATAGCCCATGCCTTCGCGCTGTTCGTCGGAGTTTCCATGGCCGCCAACATCTCCGGTGGCCACTTGAACCCCGTTGTCACCTTCGGCCTCGCCGTCGGTGGCCACATCACCATCCTCACCGGCATCTTCTACTGGGTCGCTCAGCTGCTCGGCGCGTCCGTCGCGTGTCTGCTCTGCAGTTCTCCACCCACGGACAGGCTATCCCGACGCACGCCATCGCCGGAATTAGCGAGATCGAGGGCATGGTGA
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| Protein seq | MVKLAFGSCGDSFSASSIKAYVAEFIATLLFVFAGVGSAIAYGQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPVVTFGLAVGGHITILTGIFYWVAQLLGASVACLLCSSPPTDRLSRRTPSPELARSRAW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0550900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46490 | SBH | 0.0 | 0.0 | 0.264401 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0658100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022190 | RBH | 0.0 | 27.068123 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022930 | RBH | 0.0 | 11.601192 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022660 | RBH | 0.0 | 32.168095 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022410 | RBH | 0.0 | 1.114340 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0413900 | SBH | 0.0807185 | 0.3222635 | 2.646291 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021380 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0435600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022220 | RBH | 0.0 | 4.410308 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021630 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021560 | RBH | 0.0 | 0.0 | 0.0 |
