Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0413900 | OGI:04079470 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:28095919-28097077 | ||||||||
| Gene Symbol | TIP3;2, OsTIP3;2, TIP3-2, OsEnS-70, TIP5;1, OsTIP5;1 | ||||||||||
| DNA seq | ATGCTGCCAGGTCGCCACACTCCCCGCCGTGCTGACGCCGCCGCCGCTGCCGCCGCCATGGAGCCCCTGGTGCCGGGCGCCACCCGCGCGGCGCTGTCGGAGTTCGTAGCCACCGCCGTGTTCGTCTTCGCCGCCGAAGGCTCCGTCTACGGCCTCTGTAAAATAGCTACGCGAACCCAACCGCATGCATGAACGCCCGCACGCTCTCCCGTGCGTTTGTCTGAAGATTTTTTTTTTGTGTGTTTGGATTGCTGCAGGGAAGATGTACAGGGACACGGGGACGCTGGGCGGCCTGCTGGTGGTGGCGGTGGCGCACGCGCTGGCGCTGGCGGCCGCGGTGGCGGTGTCGCGCAACGCGTCGGGCGGGCACGTCAACCCGGCCGTCACGTTCGGCGTGCTCGTCGGCCGCCGCATCTCCTTCGCCCGCGCCGCGCTCTACTGGGCCGCCCAGCTGCTCGGCGCCGTGCTCGCCGTGCTTCTCCTCAGGCTGGCCTCCGGAGGCATGGTAACTAGCTCACTTTTCTTTATCTCTTCGTCACCAAAAGCCTACATTAGCGCTTAATTAAATCACATTTACAACTTACATGCTGTTATATATCAATTGATCATTATTAGCGACGCCGTATTTTGCTTCTTTTGGCCTACCACAAAAAACCAAAAAATTAATGTTTGCGTATTTCCTTTTGGCATGAGCTATCTACCACTACCAGCGTGTACAGGTGCGTCATGTTTGCCACGTCTCACTTTGACAAACGTTGTCCTGCAGCGCCCCATGGGCTTCACGCTCGGCCACCGCATCCACGAGCGGCACGCCCTGCTGCTCGAGGTCGTCATGACGTTCGGGCTCGTGTACACCGTGTACGCCACCGCCGTCGACCGGAGAAGCGGCGGCGGCGACATTGCGCCCCTCGCCATCGGCTTGGTCGCGGGCGCGAACATCCTCGCCGGGGGCCCGTTCGACGGCGCGGCCATGAACCCGGCGCGCGCGTTCGGCCCGGCGCTCGTCGGCTGGAACTGGCGCCACCACTGGGTTTACTGGCTCGGGCCGCTCATCGGCGCCGGGATGGCCGGCGCGCTGTACGAGTTTGTCATGGCGGAGCAGCCTGAGCCGCCGGCAGCTGCAGATACTCGGCTTCCCGTGGCCGCCGAGGATTACTGA
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| CDS seq | ATGCTGCCAGGTCGCCACACTCCCCGCCGTGCTGACGCCGCCGCCGCTGCCGCCGCCATGGAGCCCCTGGTGCCGGGCGCCACCCGCGCGGCGCTGTCGGAGTTCGTAGCCACCGCCGTGTTCGTCTTCGCCGCCGAAGGCTCCGTCTACGGCCTCTGGAAGATGTACAGGGACACGGGGACGCTGGGCGGCCTGCTGGTGGTGGCGGTGGCGCACGCGCTGGCGCTGGCGGCCGCGGTGGCGGTGTCGCGCAACGCGTCGGGCGGGCACGTCAACCCGGCCGTCACGTTCGGCGTGCTCGTCGGCCGCCGCATCTCCTTCGCCCGCGCCGCGCTCTACTGGGCCGCCCAGCTGCTCGGCGCCGTGCTCGCCGTGCTTCTCCTCAGGCTGGCCTCCGGAGGCATGCGCCCCATGGGCTTCACGCTCGGCCACCGCATCCACGAGCGGCACGCCCTGCTGCTCGAGGTCGTCATGACGTTCGGGCTCGTGTACACCGTGTACGCCACCGCCGTCGACCGGAGAAGCGGCGGCGGCGACATTGCGCCCCTCGCCATCGGCTTGGTCGCGGGCGCGAACATCCTCGCCGGGGGCCCGTTCGACGGCGCGGCCATGAACCCGGCGCGCGCGTTCGGCCCGGCGCTCGTCGGCTGGAACTGGCGCCACCACTGGGTTTACTGGCTCGGGCCGCTCATCGGCGCCGGGATGGCCGGCGCGCTGTACGAGTTTGTCATGGCGGAGCAGCCTGAGCCGCCGGCAGCTGCAGATACTCGGCTTCCCGTGGCCGCCGAGGATTACTGA
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| Protein seq | MLPGRHTPRRADAAAAAAAMEPLVPGATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEPPAAADTRLPVAAEDY |
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| Function | Probable aquaporin TIP3-2 [UniProtKB/Swiss-Prot:Q7XKI5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0413900 | OsMH63_04T0413900.1 | Chr04 | 28095919 | 28097077 | + | maker | ||
| CDS seq | ATGCTGCCAGGTCGCCACACTCCCCGCCGTGCTGACGCCGCCGCCGCTGCCGCCGCCATGGAGCCCCTGGTGCCGGGCGCCACCCGCGCGGCGCTGTCGGAGTTCGTAGCCACCGCCGTGTTCGTCTTCGCCGCCGAAGGCTCCGTCTACGGCCTCTGGAAGATGTACAGGGACACGGGGACGCTGGGCGGCCTGCTGGTGGTGGCGGTGGCGCACGCGCTGGCGCTGGCGGCCGCGGTGGCGGTGTCGCGCAACGCGTCGGGCGGGCACGTCAACCCGGCCGTCACGTTCGGCGTGCTCGTCGGCCGCCGCATCTCCTTCGCCCGCGCCGCGCTCTACTGGGCCGCCCAGCTGCTCGGCGCCGTGCTCGCCGTGCTTCTCCTCAGGCTGGCCTCCGGAGGCATGCGCCCCATGGGCTTCACGCTCGGCCACCGCATCCACGAGCGGCACGCCCTGCTGCTCGAGGTCGTCATGACGTTCGGGCTCGTGTACACCGTGTACGCCACCGCCGTCGACCGGAGAAGCGGCGGCGGCGACATTGCGCCCCTCGCCATCGGCTTGGTCGCGGGCGCGAACATCCTCGCCGGGGGCCCGTTCGACGGCGCGGCCATGAACCCGGCGCGCGCGTTCGGCCCGGCGCTCGTCGGCTGGAACTGGCGCCACCACTGGGTTTACTGGCTCGGGCCGCTCATCGGCGCCGGGATGGCCGGCGCGCTGTACGAGTTTGTCATGGCGGAGCAGCCTGAGCCGCCGGCAGCTGCAGATACTCGGCTTCCCGTGGCCGCCGAGGATTACTGA
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| Protein seq | MLPGRHTPRRADAAAAAAAMEPLVPGATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEPPAAADTRLPVAAEDY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0807185 | 0.3222635 | 2.646291 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0527900 | RBH | 0.0 | 0.0 | 0.774042 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44570 | RBH | 0.0 | 0.0 | 0.185050 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0527900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020580 | RBH | 0.691428 | 3.192381 | 5.343912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0021340 | RBH | 0.000000 | 1.081421 | 4.564792 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0021070 | RBH | 1.403914 | 8.154581 | 10.543259 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020800 | RBH | 0.166075 | 0.165385 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020980 | RBH | 8.730521 | 0.000000 | 14.955006 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0432600 | RBH | 0.041983 | 13.069549 | 0.0231855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019780 | RBH | 0.633693 | 0.964398 | 1.661840 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0414700 | RBH | 0.0775635 | 0.232034 | 0.1548275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0020280 | RBH | 0.526502 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0020130 | RBH | 0.395557 | 1.506328 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020250 | RBH | 7.489570 | 3.190618 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020620 | RBH | 1.006470 | 0.446750 | 1.602217 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020800 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020060 | RBH | 0.601873 | 1.575925 | 3.946789 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020020 | RBH | 0.0 | 0.0 | 0.000000 |
