Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g46490 | OGI:04082400 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:27575661-27576996 | ||||||||
| Gene Symbol | TIP5;1, OsTIP5;1 | ||||||||||
| DNA seq | GGGCCCTTCTATATTTTAGATCAAAGGAAGCCCATTAACAAAAGTACTACCCAAACCATCCATTAGTCCATCACAATTCACTAGGATCAAACTGCCTACTATACTAGATTACATTGCTTTCTTTCCTTCAAACATCCACAAATCCACAACCTAATAAAGACACAGATCTTACACACATACTACATGTAACTACACGAAACCAAATGCAACAAAGATTCTAACACGACAAACAAAGATTTTTCGTCAGGGTGACAGACTGCCAGAATGATTTCATCACACGACCACCGTTTGCACGCTCCCATGGCGCGCCGACTCGTTCGTCGCCGGCGCCGGCGCCGGCTCCGGCACGGTCGGGAAGACCAGGGCTTGATGCACCAGCGCCGCCACCGCCGCGCCGACCATCGGGCCGGCCCAGTACACGGCCTGGTTGCTGTAGTGCCCGCTGACAACCGCCGGCCCGAACGAGCGCGCCGGGTTCATCGACGCGCCCGTGAGCGACCCCGCCGCCAGCACGCACGCGCCCGTCACGGCCCCGACCACCAGCGCGCCCAGCGCCGTCGCCGCGGGCCCCTTCCTGCCGCCGAAGCCTCCACCCCGCGGGTCGCCGGCGACGTGCACCGTGTACACCACCATGAACGTGAGCACCCCCTCCAGGATCCCCGCCCCGAACCCGGTCATCTCCACCGCGATCCTCGTCGTCGGCACGGCCTGTGTGTGCAAACGCGCGTTAGTCTACGCAAAGTTAAGGACATTTCGATCGGAAGTGATCTTGCCTGGCCGGCGGAGATGTAGTGGAGGACGAGGCAGGCGAACGTGGAGCCGAGCATCTGAGACGCCCAGTAGAAGATGGCGCTCGGGACGGTGATGTGGCCGCCGATGGCGTAGGCGAACGTCACGGCGGGGTTGACGTGGCCGCCGGAGACGTCGGCGGCGATGAACACCGCGGCGAAGAGCCCGAACGCCTGCGCAACGGCGGTCGCCATCAGGGACGAGGCATCGGATGTTTCATCCGGCGTGAGCATCCCTGGCAACAGCGCGCGGCAAGTTCACAGAGCGAAATCACGTATGAGACCAACAAAGCAGAGCAATTCGCACGACATGCGGAACGTAGGTTGCAGTGAAACGCATGACTTACGGGCGGAGATGGTGGAGCCGACGGCGATGAACACAAAGAGGAAGGTGGAGAAGAACTCGGCGAAGTACGCCCGGAGCGCCGGCGGCGAGAAGCAGCGCTTCATGTTGGCACAGATGTTCGCCATTGCAAGTTTACCCTGTGTGTGTGTGTGACACTGTGTTTACAGAGCAGTGAAGAACACGATTACACGAATTCGCACAG
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| CDS seq | ATGGCGAACATCTGTGCCAACATGAAGCGCTGCTTCTCGCCGCCGGCGCTCCGGGCGTACTTCGCCGAGTTCTTCTCCACCTTCCTCTTTGTGTTCATCGCCGTCGGCTCCACCATCTCCGCCCGGATGCTCACGCCGGATGAAACATCCGATGCCTCGTCCCTGATGGCGACCGCCGTTGCGCAGGCGTTCGGGCTCTTCGCCGCGGTGTTCATCGCCGCCGACGTCTCCGGCGGCCACGTCAACCCCGCCGTGACGTTCGCCTACGCCATCGGCGGCCACATCACCGTCCCGAGCGCCATCTTCTACTGGGCGTCTCAGATGCTCGGCTCCACGTTCGCCTGCCTCGTCCTCCACTACATCTCCGCCGGCCAGGCCGTGCCGACGACGAGGATCGCGGTGGAGATGACCGGGTTCGGGGCGGGGATCCTGGAGGGGGTGCTCACGTTCATGGTGGTGTACACGGTGCACGTCGCCGGCGACCCGCGGGGTGGAGGCTTCGGCGGCAGGAAGGGGCCCGCGGCGACGGCGCTGGGCGCGCTGGTGGTCGGGGCCGTGACGGGCGCGTGCGTGCTGGCGGCGGGGTCGCTCACGGGCGCGTCGATGAACCCGGCGCGCTCGTTCGGGCCGGCGGTTGTCAGCGGGCACTACAGCAACCAGGCCGTGTACTGGGCCGGCCCGATGGTCGGCGCGGCGGTGGCGGCGCTGGTGCATCAAGCCCTGGTCTTCCCGACCGTGCCGGAGCCGGCGCCGGCGCCGGCGACGAACGAGTCGGCGCGCCATGGGAGCGTGCAAACGGTGGTCGTGTGA
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| Protein seq | MANICANMKRCFSPPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVHVAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALVHQALVFPTVPEPAPAPATNESARHGSVQTVVV |
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| Function | Probable aquaporin TIP5-1 [UniProtKB/Swiss-Prot:Q7XU31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g46490 | LOC_Os04g46490.1 | Chr04 | 27575661 | 27576996 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGAACATCTGTGCCAACATGAAGCGCTGCTTCTCGCCGCCGGCGCTCCGGGCGTACTTCGCCGAGTTCTTCTCCACCTTCCTCTTTGTGTTCATCGCCGTCGGCTCCACCATCTCCGCCCGGATGCTCACGCCGGATGAAACATCCGATGCCTCGTCCCTGATGGCGACCGCCGTTGCGCAGGCGTTCGGGCTCTTCGCCGCGGTGTTCATCGCCGCCGACGTCTCCGGCGGCCACGTCAACCCCGCCGTGACGTTCGCCTACGCCATCGGCGGCCACATCACCGTCCCGAGCGCCATCTTCTACTGGGCGTCTCAGATGCTCGGCTCCACGTTCGCCTGCCTCGTCCTCCACTACATCTCCGCCGGCCAGGCCGTGCCGACGACGAGGATCGCGGTGGAGATGACCGGGTTCGGGGCGGGGATCCTGGAGGGGGTGCTCACGTTCATGGTGGTGTACACGGTGCACGTCGCCGGCGACCCGCGGGGTGGAGGCTTCGGCGGCAGGAAGGGGCCCGCGGCGACGGCGCTGGGCGCGCTGGTGGTCGGGGCCGTGACGGGCGCGTGCGTGCTGGCGGCGGGGTCGCTCACGGGCGCGTCGATGAACCCGGCGCGCTCGTTCGGGCCGGCGGTTGTCAGCGGGCACTACAGCAACCAGGCCGTGTACTGGGCCGGCCCGATGGTCGGCGCGGCGGTGGCGGCGCTGGTGCATCAAGCCCTGGTCTTCCCGACCGTGCCGGAGCCGGCGCCGGCGCCGGCGACGAACGAGTCGGCGCGCCATGGGAGCGTGCAAACGGTGGTCGTGTGA
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| Protein seq | MANICANMKRCFSPPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVHVAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALVHQALVFPTVPEPAPAPATNESARHGSVQTVVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.264401 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0550800 | RBH | 0.0 | 0.0 | 1.025719 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g44080 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0550800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022180 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022650 | RBH | 0.0 | 0.0 | 1.637482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022550 | RBH | 0.0 | 0.0 | 1.683402 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0413900 | SBH | 0.0807185 | 0.3222635 | 2.646291 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021370 | RBH | 0.0 | 0.0 | 0.105789 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0435400 | RBH | 0.0149655 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021620 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021550 | RBH | 0.0 | 0.0 | 0.000000 |
