Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0738500 | OGI:01061450 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:30828776-30832255 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCGCCGCCGGCCCGCCGGATTTCCGTGGCCGTGTGGCGGGAGGGGCGAGCCGCGGGCGTAGCAAGCCGGCGAGCCAGACTGGCGGGAGGGGGGGCAGGGGGGACGGAGCCGTGGGCGCGCCGCCAGCGAACCCAAATTTTGCTAGAGCCAGGCACCTAGTTCTCAAGGGCGCGTCTCGGCACGGGTGTAGGTAGTCCTCTAATGTCATCTTCCCGTAGATTCTCACTCTCAAGTCTCTGTTCATTGGCTGTCACTGGAAAATCGTAGTTTAAAAATGGAAGCCACTGTGTGTTTTGGTTTGTGACATGGGTATGTAGATCATTAGATGTTTAGATCAATATAGCAAGTTCATCGATGTAGGTTCGTCTGGAACGCTCGAATTGAAATGATTGTTGTCAAATTCATGTGAATTTTCTCTTTTCCAAGCGAGTCATAAAGAGGAATAGCCATGTTTTCTTTTTTTTTCCCCTTTTCTCCTTTTTCTGGCGATCAGGTTAGTGGAGAGACCCCTCTGCATTTCTTAAAACTTCGGACCTGCTACTAAAATGATCACACACATTGCATACTTCAGGGCTTAAGCCTTGTCTAACTTCTCAACACATGTTTATGTTTTTTTTTACTGTCAACGTCTGTGCTGTTTCCTCTGACTGGTCTTATGAATTTTTCAAAACAGGAACAGTACAAGACCATGTCTTCAAGGAGAGGAGGTGGTGGCCGCCGTGGTCGTGGCCGTGGCCGTGGGAGAAGTGCTTTGGCAGAAAATGATATGGACTTTCATGAAACCTCTGCACCTTCTTCCCCGAGCACTACTTCTGATAAAGAGGACAATATTGAGTTCACTTCGCAGCAACCTTGTCTTGTAAGCCCAGCAGCAGAGCATGTATCCAACACGTTACTCAACCCTAAGATCAACCACCGATCGGATGCAATCTTCGGTGATCAGGTTAATCCAAGAGCAATTAAGTTTTGTCATAGTTGCATAAGTAAACAAGTTATTGTAGGCAGAATAAACTTCGCAGTGCCACTGAGGTCATGTTTTTTGCAGGCTGTGGAGCAGTTGAAGTTGCGACATCACAAACCTTTAAAATTTCATGAGAGATACCGTCCTTATTTGAGGGATGCTGGCCTTCTTGGGCTCTCACAAATTTGCCAGAAGATGCCTCAATTGGACAAGGCATTGATCACTGCCCTTGTTGAGCGTTGGAGACCAGAAACTCATAGTTTTCACTTGGCTTCTGGGGAGATGGCAGTTACACTACAAGATGTAGCAATGTTGTTAGCTCTTCCTATTGATGGCCGTCCAGTTTGTTCTACCACTGATCATGATTATGCGCAGATGGTCATTGATTGTCTAGGTCATGATCCAAGAGGACCATCAATGCCTGGAAAATCTTTTCTGCACTACAAATGGCTGAAGAAGCATTTCTATGAATTACCAGAAGGAGCAGATGATCAGACTGTGGAGAGGCACGTTCGAGCATATATCCTGAGCCTTTTATGTGGGGTGCTATTTCCAGATGGAACAGGACGGATGAGTCTGATATATCTTCCACTGATTGCTGATCTTTCTCGTGTTGGGACATACAGCTGGGGATCTGCAGTGCTGGCCTTCCTATACCGTTCTCTTTGTTCTGTTGCTTCCTCCCACAATATCAAGAACATTGGTGGTTCATTGCTTCTCTTGCAGCTTTGGAGCTGGGAGCGCTCCCATGTTGGCAGACCATTGGTCCGGTCTCCCCTGTGCCCAGAGACAGACATTCCACAGGATTTGCCCCCTGTTGGCTTTCGTTGGGTAGGTGCGCGCACACAAAGTGAGAATGCTACACGCTGTCTTAAGCAGTACAGGGATGAACTGAACCTGCAGCGAGCTGATCAGGTGAAGTGGGAGCCCTACTTGCACATTGAGTCTTCAAGCTTGCCATTGCTTTGTACAAAAGATGCAGATTTGTGGCTTACACAAGCTCCACTAATAAATTTTCCTATAGTCGAGATGTATTTGCCTGAGCGAGTGATGCGGCAATTTGGGCTTCGCCAATCCATTCCACCACCTTTTCGACCTACCCTACAGGCGCTGCATCGTATTAGTCGACGTGGCAGAGAACGTGAGAACTGGGAAGAGACACATCATGAGTACATTCAGGAATGGGAAGCCCGCCGGCAGCGCATATTTCCAGAGTCAGAGCAGTATGACCCATCGTCTTATGAGGAGTACCTGCATTGGTACTCAGGAGTTACACGGCGGTATCTTGTACCATCAATCAGTGATGATGTGGAAGCAGGACCTTCATTACAGCCTGATGATTCCATTGATCTGCAGTATCAAGCCAAGGCTCCTATGATCCGCAAAGCAGTAAGCCTATATTATCTATTCAGTTCCTATGCAGTTTCTGTAGTTGATTGGACCTAAATTTGTGTCAGATATAAGTTGTCTTTGCGAGACTTCAAATAGTTTTTACAATCACTCCATGCATAATTTAACTAATATATTTAACTCGAAGGGTCTGCTGATTGTTGTAGGTTGATAAACTGCACGGTATGGTAAAGAAGGCCAAGATGGCCATGACATCCACAGCTGATACAACCAAACAAGCCTTGGTCTTTGAGTTTCTGCATGGCTTTCAGGATGTTCTCCATGACCTTGGCGAGATCAAGGAAAATGGTGGTTCCGCTACTAGTCCACATGTTGAATCAGCTGCCGCTCAAGACTACTTTTGCTAGAAGCTGAACAGAACATTGTTCATGCCGATCAAGAAGCTCAGCATCAGGAAGAGGAAGAGCTTCACATGGTGGATGATGCAACAATGACCCTCGAGCCTATGGATGAGGAGGATAATGGTTTCAACAATGTCATCTGCCCATGTCCTTCACTGGAGTTGGAGGAACACAGTCACTCAGCTACACCAGCCATCGATGAGTGTGATACAGCCACTCCTGCTCCAGGCTCTGCAATCCCACAGCAAAGCACTAGTGTTGATCAAGATGGACATCTGGAAAATCCTAACGAAATGGGCCAGATTGAACTAATGGTGGAACCTATGTATGTGGATCACAATGATTCCAACAATGTGCTCTCATCCAGCACGTCAGCTCAGGCGCTGTTGGAGAATTGTGAAGTAGCAGAGGCAGTCAATGAAAATGTCGATCCAGCCACCCAAGTTACTGGCTCATCTACCCCAGAACAGGGCACGGATGTCATAGTAGATGCTGAACAAGAAAACCCAGCCACAACAGAGGGCAACTAACTTCAATGCCGTCCCCTCGTCTGCAAAGGTGACAGGCGATTCTGATTTCTCCCCTTATGGACCAATTCGTGCCACCTATGTATAGTGCTTAGATGCCGTTGTCCGAAGGTTCAGCATATTGCTGACATATTGCCCTGGTTGTTTGACCATGATGGGCTCCACTGGAAATTTTAGCCGTAATTACTGATGTAGCTTACATATCTCTTGCTTTCCAAAGTCATTACACTTATCATTATCA
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| CDS seq | GAACAGTACAAGACCATGTCTTCAAGGAGAGGAGGTGGTGGCCGCCGTGGTCGTGGCCGTGGCCGTGGGAGAAGTGCTTTGGCAGAAAATGATATGGACTTTCATGAAACCTCTGCACCTTCTTCCCCGAGCACTACTTCTGATAAAGAGGACAATATTGAGTTCACTTCGCAGCAACCTTGTCTTGTAAGCCCAGCAGCAGAGCATGTATCCAACACGTTACTCAACCCTAAGATCAACCACCGATCGGATGCAATCTTCGGTGATCAGGCTGTGGAGCAGTTGAAGTTGCGACATCACAAACCTTTAAAATTTCATGAGAGATACCGTCCTTATTTGAGGGATGCTGGCCTTCTTGGGCTCTCACAAATTTGCCAGAAGATGCCTCAATTGGACAAGGCATTGATCACTGCCCTTGTTGAGCGTTGGAGACCAGAAACTCATAGTTTTCACTTGGCTTCTGGGGAGATGGCAGTTACACTACAAGATGTAGCAATGTTGTTAGCTCTTCCTATTGATGGCCGTCCAGTTTGTTCTACCACTGATCATGATTATGCGCAGATGGTCATTGATTGTCTAGGTCATGATCCAAGAGGACCATCAATGCCTGGAAAATCTTTTCTGCACTACAAATGGCTGAAGAAGCATTTCTATGAATTACCAGAAGGAGCAGATGATCAGACTGTGGAGAGGCACGTTCGAGCATATATCCTGAGCCTTTTATGTGGGGTGCTATTTCCAGATGGAACAGGACGGATGAGTCTGATATATCTTCCACTGATTGCTGATCTTTCTCGTGTTGGGACATACAGCTGGGGATCTGCAGTGCTGGCCTTCCTATACCGTTCTCTTTGTTCTGTTGCTTCCTCCCACAATATCAAGAACATTGGTGGTTCATTGCTTCTCTTGCAGCTTTGGAGCTGGGAGCGCTCCCATGTTGGCAGACCATTGGTCCGGTCTCCCCTGTGCCCAGAGACAGACATTCCACAGGATTTGCCCCCTGTTGGCTTTCGTTGGGTAGGTGCGCGCACACAAAGTGAGAATGCTACACGCTGTCTTAAGCAGTACAGGGATGAACTGAACCTGCAGCGAGCTGATCAGGTGAAGTGGGAGCCCTACTTGCACATTGAGTCTTCAAGCTTGCCATTGCTTTGTACAAAAGATGCAGATTTGTGGCTTACACAAGCTCCACTAATAAATTTTCCTATAGTCGAGATGTATTTGCCTGAGCGAGTGATGCGGCAATTTGGGCTTCGCCAATCCATTCCACCACCTTTTCGACCTACCCTACAGGCGCTGCATCGTATTAGTCGACGTGGCAGAGAACGTGAGAACTGGGAAGAGACACATCATGAGTACATTCAGGAATGGGAAGCCCGCCGGCAGCGCATATTTCCAGAGTCAGAGCAGTATGACCCATCGTCTTATGAGGAGTACCTGCATTGGTACTCAGGAGTTACACGGCGGTATCTTGTACCATCAATCAGTGATGATGTGGAAGCAGGACCTTCATTACAGCCTGATGATTCCATTGATCTGCAGTATCAAGCCAAGGCTCCTATGATCCGCAAAGCAGTTGATAAACTGCACGGTATGGTAAAGAAGGCCAAGATGGCCATGACATCCACAGCTGATACAACCAAACAAGCCTTGGTCTTTGAGTTTCTGCATGGCTTTCAGGATGTTCTCCATGACCTTGGCGAGATCAAGGAAAATGGTGGTTCCGCTACTAGTCCACATGTTGAATCAGCTGCCGCTCAAGACTACTTTTGCTAG
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| Protein seq | EQYKTMSSRRGGGGRRGRGRGRGRSALAENDMDFHETSAPSSPSTTSDKEDNIEFTSQQPCLVSPAAEHVSNTLLNPKINHRSDAIFGDQAVEQLKLRHHKPLKFHERYRPYLRDAGLLGLSQICQKMPQLDKALITALVERWRPETHSFHLASGEMAVTLQDVAMLLALPIDGRPVCSTTDHDYAQMVIDCLGHDPRGPSMPGKSFLHYKWLKKHFYELPEGADDQTVERHVRAYILSLLCGVLFPDGTGRMSLIYLPLIADLSRVGTYSWGSAVLAFLYRSLCSVASSHNIKNIGGSLLLLQLWSWERSHVGRPLVRSPLCPETDIPQDLPPVGFRWVGARTQSENATRCLKQYRDELNLQRADQVKWEPYLHIESSSLPLLCTKDADLWLTQAPLINFPIVEMYLPERVMRQFGLRQSIPPPFRPTLQALHRISRRGRERENWEETHHEYIQEWEARRQRIFPESEQYDPSSYEEYLHWYSGVTRRYLVPSISDDVEAGPSLQPDDSIDLQYQAKAPMIRKAVDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAAAQDYFC |
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| Function | Serine/threonine-protein phosphatase 7 long form homolog [UniProtKB/Swiss-Prot:Q9LNG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0738500 | Os01t0738500-01 | Chr01 | 30828776 | 30832255 | + | irgsp1_rep | ||
| CDS seq | GAACAGTACAAGACCATGTCTTCAAGGAGAGGAGGTGGTGGCCGCCGTGGTCGTGGCCGTGGCCGTGGGAGAAGTGCTTTGGCAGAAAATGATATGGACTTTCATGAAACCTCTGCACCTTCTTCCCCGAGCACTACTTCTGATAAAGAGGACAATATTGAGTTCACTTCGCAGCAACCTTGTCTTGTAAGCCCAGCAGCAGAGCATGTATCCAACACGTTACTCAACCCTAAGATCAACCACCGATCGGATGCAATCTTCGGTGATCAGGCTGTGGAGCAGTTGAAGTTGCGACATCACAAACCTTTAAAATTTCATGAGAGATACCGTCCTTATTTGAGGGATGCTGGCCTTCTTGGGCTCTCACAAATTTGCCAGAAGATGCCTCAATTGGACAAGGCATTGATCACTGCCCTTGTTGAGCGTTGGAGACCAGAAACTCATAGTTTTCACTTGGCTTCTGGGGAGATGGCAGTTACACTACAAGATGTAGCAATGTTGTTAGCTCTTCCTATTGATGGCCGTCCAGTTTGTTCTACCACTGATCATGATTATGCGCAGATGGTCATTGATTGTCTAGGTCATGATCCAAGAGGACCATCAATGCCTGGAAAATCTTTTCTGCACTACAAATGGCTGAAGAAGCATTTCTATGAATTACCAGAAGGAGCAGATGATCAGACTGTGGAGAGGCACGTTCGAGCATATATCCTGAGCCTTTTATGTGGGGTGCTATTTCCAGATGGAACAGGACGGATGAGTCTGATATATCTTCCACTGATTGCTGATCTTTCTCGTGTTGGGACATACAGCTGGGGATCTGCAGTGCTGGCCTTCCTATACCGTTCTCTTTGTTCTGTTGCTTCCTCCCACAATATCAAGAACATTGGTGGTTCATTGCTTCTCTTGCAGCTTTGGAGCTGGGAGCGCTCCCATGTTGGCAGACCATTGGTCCGGTCTCCCCTGTGCCCAGAGACAGACATTCCACAGGATTTGCCCCCTGTTGGCTTTCGTTGGGTAGGTGCGCGCACACAAAGTGAGAATGCTACACGCTGTCTTAAGCAGTACAGGGATGAACTGAACCTGCAGCGAGCTGATCAGGTGAAGTGGGAGCCCTACTTGCACATTGAGTCTTCAAGCTTGCCATTGCTTTGTACAAAAGATGCAGATTTGTGGCTTACACAAGCTCCACTAATAAATTTTCCTATAGTCGAGATGTATTTGCCTGAGCGAGTGATGCGGCAATTTGGGCTTCGCCAATCCATTCCACCACCTTTTCGACCTACCCTACAGGCGCTGCATCGTATTAGTCGACGTGGCAGAGAACGTGAGAACTGGGAAGAGACACATCATGAGTACATTCAGGAATGGGAAGCCCGCCGGCAGCGCATATTTCCAGAGTCAGAGCAGTATGACCCATCGTCTTATGAGGAGTACCTGCATTGGTACTCAGGAGTTACACGGCGGTATCTTGTACCATCAATCAGTGATGATGTGGAAGCAGGACCTTCATTACAGCCTGATGATTCCATTGATCTGCAGTATCAAGCCAAGGCTCCTATGATCCGCAAAGCAGTTGATAAACTGCACGGTATGGTAAAGAAGGCCAAGATGGCCATGACATCCACAGCTGATACAACCAAACAAGCCTTGGTCTTTGAGTTTCTGCATGGCTTTCAGGATGTTCTCCATGACCTTGGCGAGATCAAGGAAAATGGTGGTTCCGCTACTAGTCCACATGTTGAATCAGCTGCCGCTCAAGACTACTTTTGCTAG
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| Protein seq | EQYKTMSSRRGGGGRRGRGRGRGRSALAENDMDFHETSAPSSPSTTSDKEDNIEFTSQQPCLVSPAAEHVSNTLLNPKINHRSDAIFGDQAVEQLKLRHHKPLKFHERYRPYLRDAGLLGLSQICQKMPQLDKALITALVERWRPETHSFHLASGEMAVTLQDVAMLLALPIDGRPVCSTTDHDYAQMVIDCLGHDPRGPSMPGKSFLHYKWLKKHFYELPEGADDQTVERHVRAYILSLLCGVLFPDGTGRMSLIYLPLIADLSRVGTYSWGSAVLAFLYRSLCSVASSHNIKNIGGSLLLLQLWSWERSHVGRPLVRSPLCPETDIPQDLPPVGFRWVGARTQSENATRCLKQYRDELNLQRADQVKWEPYLHIESSSLPLLCTKDADLWLTQAPLINFPIVEMYLPERVMRQFGLRQSIPPPFRPTLQALHRISRRGRERENWEETHHEYIQEWEARRQRIFPESEQYDPSSYEEYLHWYSGVTRRYLVPSISDDVEAGPSLQPDDSIDLQYQAKAPMIRKAVDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAAAQDYFC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0738500 | RBH | 0.888727 | 1.284918 | 1.712733 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g53660 | RBH | 0.600585 | 0.861688 | 0.440469 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0531200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020080 | SBH | 0.767015 | 0.000000 | 3.527519 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019700 | SBH | 0.158599 | 0.864534 | 0.902029 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032900 | RBH | 0.0 | 0.000000 | 0.539550 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019410 | SBH | 0.209123 | 0.097097 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019330 | SBH | 0.000000 | 0.000000 | 5.114198 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0511900 | RBH | 1.545853 | 1.639233 | 1.9428505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031580 | RBH | 0.104808 | 0.000000 | 0.040821 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0505600 | RBH | 1.1757505 | 1.3232665 | 4.6559175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019390 | SBH | 0.066312 | 0.118430 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019300 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019560 | SBH | 0.295324 | 9.996666 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019320 | SBH | 0.256167 | 0.309924 | 1.483081 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019210 | SBH | 0.000000 | 1.104307 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032440 | RBH | 0.000000 | 0.720171 | 0.776462 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032090 | RBH | 0.272975 | 4.603209 | 0.764548 |
