Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g53660 | OGI:01061450 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:30828771-30832258 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCGGCCGCCGCCGGCCCGCCGGATTTCCGTGGCCGTGTGGCGGGAGGGGCGAGCCGCGGGCGTAGCAAGCCGGCGAGCCAGACTGGCGGGAGGGGGGGCAGGGGGGACGGAGCCGTGGGCGCGCCGCCAGCGAACCCAAATTTTGCTAGAGCCAGGCACCTAGTTCTCAAGGGCGCGTCTCGGCACGGGTGTAGGTAGTCCTCTAATGTCATCTTCCCGTAGATTCTCACTCTCAAGTCTCTGTTCATTGGCTGTCACTGGAAAATCGTAGTTTAAAAATGGAAGCCACTGTGTGTTTTGGTTTGTGACATGGGTATGTAGATCATTAGATGTTTAGATCAATATAGCAAGTTCATCGATGTAGGTTCGTCTGGAACGCTCGAATTGAAATGATTGTTGTCAAATTCATGTGAATTTTCTCTTTTCCAAGCGAGTCATAAAGAGGAATAGCCATGTTTTCTTTTTTTTTCCCCTTTTCTCCTTTTTCTGGCGATCAGGTTAGTGGAGAGACCCCTCTGCATTTCTTAAAACTTCGGACCTGCTACTAAAATGATCACACACATTGCATACTTCAGGGCTTAAGCCTTGTCTAACTTCTCAACACATGTTTATGTTTTTTTTTACTGTCAACGTCTGTGCTGTTTCCTCTGACTGGTCTTATGAATTTTTCAAAACAGGAACAGTACAAGACCATGTCTTCAAGGAGAGGAGGTGGTGGCCGCCGTGGTCGTGGCCGTGGCCGTGGGAGAAGTGCTTTGGCAGAAAATGATATGGACTTTCATGAAACCTCTGCACCTTCTTCCCCGAGCACTACTTCTGATAAAGAGGACAATATTGAGTTCACTTCGCAGCAACCTTGTCTTGTAAGCCCAGCAGCAGAGCATGTATCCAACACGTTACTCAACCCTAAGATCAACCACCGATCGGATGCAATCTTCGGTGATCAGGTTAATCCAAGAGCAATTAAGTTTTGTCATAGTTGCATAAGTAAACAAGTTATTGTAGGCAGAATAAACTTCGCAGTGCCACTGAGGTCATGTTTTTTGCAGGCTGTGGAGCAGTTGAAGTTGCGACATCACAAACCTTTAAAATTTCATGAGAGATACCGTCCTTATTTGAGGGATGCTGGCCTTCTTGGGCTCTCACAAATTTGCCAGAAGATGCCTCAATTGGACAAGGCATTGATCACTGCCCTTGTTGAGCGTTGGAGACCAGAAACTCATAGTTTTCACTTGGCTTCTGGGGAGATGGCAGTTACACTACAAGATGTAGCAATGTTGTTAGCTCTTCCTATTGATGGCCGTCCAGTTTGTTCTACCACTGATCATGATTATGCGCAGATGGTCATTGATTGTCTAGGTCATGATCCAAGAGGACCATCAATGCCTGGAAAATCTTTTCTGCACTACAAATGGCTGAAGAAGCATTTCTATGAATTACCAGAAGGAGCAGATGATCAGACTGTGGAGAGGCACGTTCGAGCATATATCCTGAGCCTTTTATGTGGGGTGCTATTTCCAGATGGAACAGGACGGATGAGTCTGATATATCTTCCACTGATTGCTGATCTTTCTCGTGTTGGGACATACAGCTGGGGATCTGCAGTGCTGGCCTTCCTATACCGTTCTCTTTGTTCTGTTGCTTCCTCCCACAATATCAAGAACATTGGTGGTTCATTGCTTCTCTTGCAGCTTTGGAGCTGGGAGCGCTCCCATGTTGGCAGACCATTGGTCCGGTCTCCCCTGTGCCCAGAGACAGACATTCCACAGGATTTGCCCCCTGTTGGCTTTCGTTGGGTAGGTGCGCGCACACAAAGTGAGAATGCTACACGCTGTCTTAAGCAGTACAGGGATGAACTGAACCTGCAGCGAGCTGATCAGGTGAAGTGGGAGCCCTACTTGCACATTGAGTCTTCAAGCTTGCCATTGCTTTGTACAAAAGATGCAGATTTGTGGCTTACACAAGCTCCACTAATAAATTTTCCTATAGTCGAGATGTATTTGCCTGAGCGAGTGATGCGGCAATTTGGGCTTCGCCAATCCATTCCACCACCTTTTCGACCTACCCTACAGGCGCTGCATCGTATTAGTCGACGTGGCAGAGAACGTGAGAACTGGGAAGAGACACATCATGAGTACATTCAGGAATGGGAAGCCCGCCGGCAGCGCATATTTCCAGAGTCAGAGCAGTATGACCCATCGTCTTATGAGGAGTACCTGCATTGGTACTCAGGAGTTACACGGCGGTATCTTGTACCATCAATCAGTGATGATGTGGAAGCAGGACCTTCATTACAGCCTGATGATTCCATTGATCTGCAGTATCAAGCCAAGGCTCCTATGATCCGCAAAGCAGTAAGCCTATATTATCTATTCAGTTCCTATGCAGTTTCTGTAGTTGATTGGACCTAAATTTGTGTCAGATATAAGTTGTCTTTGCGAGACTTCAAATAGTTTTTACAATCACTCCATGCATAATTTAACTAATATATTTAACTCGAAGGGTCTGCTGATTGTTGTAGGTTGATAAACTGCACGGTATGGTAAAGAAGGCCAAGATGGCCATGACATCCACAGCTGATACAACCAAACAAGCCTTGGTCTTTGAGTTTCTGCATGGCTTTCAGGATGTTCTCCATGACCTTGGCGAGATCAAGGAAAATGGTGGTTCCGCTACTAGTCCACATGTTGAATCAGCTGCCGCTCAAGACTACTTTTGCTAGAAGCTGAACAGAACATTGTTCATGCCGATCAAGAAGCTCAGCATCAGGAAGAGGAAGAGCTTCACATGGTGGATGATGCAACAATGACCCTCGAGCCTATGGATGAGGAGGATAATGGTTTCAACAATGTCATCTGCCCATGTCCTTCACTGGAGTTGGAGGAACACAGTCACTCAGCTACACCAGCCATCGATGAGTGTGATACAGCCACTCCTGCTCCAGGCTCTGCAATCCCACAGCAAAGCACTAGTGTTGATCAAGATGGACATCTGGAAAATCCTAACGAAATGGGCCAGATTGAACTAATGGTGGAACCTATGTATGTGGATCACAATGATTCCAACAATGTGCTCTCATCCAGCACGTCAGCTCAGGCGCTGTTGGAGAATTGTGAAGTAGCAGAGGCAGTCAATGAAAATGTCGATCCAGCCACCCAAGTTACTGGCTCATCTACCCCAGAACAGGGCACGGATGTCATAGTAGATGCTGAACAAGAAAACCCAGCCACAACAGAGGGCAACTAACTTCAATGCCGTCCCCTCGTCTGCAAAGGTGACAGGCGATTCTGATTTCTCCCCTTATGGACCAATTCGTGCCACCTATGTATAGTGCTTAGATGCCGTTGTCCGAAGGTTCAGCATATTGCTGACATATTGCCCTGGTTGTTTGACCATGATGGGCTCCACTGGAAATTTTAGCCGTAATTACTGATGTAGCTTACATATCTCTTGCTTTCCAAAGTCATTACACTTATCATTATCAACA
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| CDS seq | ATGTCTTCAAGGAGAGGAGGTGGTGGCCGCCGTGGTCGTGGCCGTGGCCGTGGGAGAAGTGCTTTGGCAGAAAATGATATGGACTTTCATGAAACCTCTGCACCTTCTTCCCCGAGCACTACTTCTGATAAAGAGGACAATATTGAGTTCACTTCGCAGCAACCTTGTCTTGTAAGCCCAGCAGCAGAGCATGTATCCAACACGTTACTCAACCCTAAGATCAACCACCGATCGGATGCAATCTTCGGTGATCAGGCTGTGGAGCAGTTGAAGTTGCGACATCACAAACCTTTAAAATTTCATGAGAGATACCGTCCTTATTTGAGGGATGCTGGCCTTCTTGGGCTCTCACAAATTTGCCAGAAGATGCCTCAATTGGACAAGGCATTGATCACTGCCCTTGTTGAGCGTTGGAGACCAGAAACTCATAGTTTTCACTTGGCTTCTGGGGAGATGGCAGTTACACTACAAGATGTAGCAATGTTGTTAGCTCTTCCTATTGATGGCCGTCCAGTTTGTTCTACCACTGATCATGATTATGCGCAGATGGTCATTGATTGTCTAGGTCATGATCCAAGAGGACCATCAATGCCTGGAAAATCTTTTCTGCACTACAAATGGCTGAAGAAGCATTTCTATGAATTACCAGAAGGAGCAGATGATCAGACTGTGGAGAGGCACGTTCGAGCATATATCCTGAGCCTTTTATGTGGGGTGCTATTTCCAGATGGAACAGGACGGATGAGTCTGATATATCTTCCACTGATTGCTGATCTTTCTCGTGTTGGGACATACAGCTGGGGATCTGCAGTGCTGGCCTTCCTATACCGTTCTCTTTGTTCTGTTGCTTCCTCCCACAATATCAAGAACATTGGTGGTTCATTGCTTCTCTTGCAGCTTTGGAGCTGGGAGCGCTCCCATGTTGGCAGACCATTGGTCCGGTCTCCCCTGTGCCCAGAGACAGACATTCCACAGGATTTGCCCCCTGTTGGCTTTCGTTGGGTAGGTGCGCGCACACAAAGTGAGAATGCTACACGCTGTCTTAAGCAGTACAGGGATGAACTGAACCTGCAGCGAGCTGATCAGGTGAAGTGGGAGCCCTACTTGCACATTGAGTCTTCAAGCTTGCCATTGCTTTGTACAAAAGATGCAGATTTGTGGCTTACACAAGCTCCACTAATAAATTTTCCTATAGTCGAGATGTATTTGCCTGAGCGAGTGATGCGGCAATTTGGGCTTCGCCAATCCATTCCACCACCTTTTCGACCTACCCTACAGGCGCTGCATCGTATTAGTCGACGTGGCAGAGAACGTGAGAACTGGGAAGAGACACATCATGAGTACATTCAGGAATGGGAAGCCCGCCGGCAGCGCATATTTCCAGAGTCAGAGCAGTATGACCCATCGTCTTATGAGGAGTACCTGCATTGGTACTCAGGAGTTACACGGCGGTATCTTGTACCATCAATCAGTGATGATGTGGAAGCAGGACCTTCATTACAGCCTGATGATTCCATTGATCTGCAGTATCAAGCCAAGGCTCCTATGATCCGCAAAGCAGTTGATAAACTGCACGGTATGGTAAAGAAGGCCAAGATGGCCATGACATCCACAGCTGATACAACCAAACAAGCCTTGGTCTTTGAGTTTCTGCATGGCTTTCAGGATGTTCTCCATGACCTTGGCGAGATCAAGGAAAATGGTGGTTCCGCTACTAGTCCACATGTTGAATCAGCTGCCGCTCAAGACTACTTTTGCTAG
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| Protein seq | MSSRRGGGGRRGRGRGRGRSALAENDMDFHETSAPSSPSTTSDKEDNIEFTSQQPCLVSPAAEHVSNTLLNPKINHRSDAIFGDQAVEQLKLRHHKPLKFHERYRPYLRDAGLLGLSQICQKMPQLDKALITALVERWRPETHSFHLASGEMAVTLQDVAMLLALPIDGRPVCSTTDHDYAQMVIDCLGHDPRGPSMPGKSFLHYKWLKKHFYELPEGADDQTVERHVRAYILSLLCGVLFPDGTGRMSLIYLPLIADLSRVGTYSWGSAVLAFLYRSLCSVASSHNIKNIGGSLLLLQLWSWERSHVGRPLVRSPLCPETDIPQDLPPVGFRWVGARTQSENATRCLKQYRDELNLQRADQVKWEPYLHIESSSLPLLCTKDADLWLTQAPLINFPIVEMYLPERVMRQFGLRQSIPPPFRPTLQALHRISRRGRERENWEETHHEYIQEWEARRQRIFPESEQYDPSSYEEYLHWYSGVTRRYLVPSISDDVEAGPSLQPDDSIDLQYQAKAPMIRKAVDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAAAQDYFC |
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| Function | Serine/threonine-protein phosphatase 7 long form homolog [UniProtKB/Swiss-Prot:Q9LNG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g53660 | LOC_Os01g53660.1 | Chr01 | 30828771 | 30832258 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTTCAAGGAGAGGAGGTGGTGGCCGCCGTGGTCGTGGCCGTGGCCGTGGGAGAAGTGCTTTGGCAGAAAATGATATGGACTTTCATGAAACCTCTGCACCTTCTTCCCCGAGCACTACTTCTGATAAAGAGGACAATATTGAGTTCACTTCGCAGCAACCTTGTCTTGTAAGCCCAGCAGCAGAGCATGTATCCAACACGTTACTCAACCCTAAGATCAACCACCGATCGGATGCAATCTTCGGTGATCAGGCTGTGGAGCAGTTGAAGTTGCGACATCACAAACCTTTAAAATTTCATGAGAGATACCGTCCTTATTTGAGGGATGCTGGCCTTCTTGGGCTCTCACAAATTTGCCAGAAGATGCCTCAATTGGACAAGGCATTGATCACTGCCCTTGTTGAGCGTTGGAGACCAGAAACTCATAGTTTTCACTTGGCTTCTGGGGAGATGGCAGTTACACTACAAGATGTAGCAATGTTGTTAGCTCTTCCTATTGATGGCCGTCCAGTTTGTTCTACCACTGATCATGATTATGCGCAGATGGTCATTGATTGTCTAGGTCATGATCCAAGAGGACCATCAATGCCTGGAAAATCTTTTCTGCACTACAAATGGCTGAAGAAGCATTTCTATGAATTACCAGAAGGAGCAGATGATCAGACTGTGGAGAGGCACGTTCGAGCATATATCCTGAGCCTTTTATGTGGGGTGCTATTTCCAGATGGAACAGGACGGATGAGTCTGATATATCTTCCACTGATTGCTGATCTTTCTCGTGTTGGGACATACAGCTGGGGATCTGCAGTGCTGGCCTTCCTATACCGTTCTCTTTGTTCTGTTGCTTCCTCCCACAATATCAAGAACATTGGTGGTTCATTGCTTCTCTTGCAGCTTTGGAGCTGGGAGCGCTCCCATGTTGGCAGACCATTGGTCCGGTCTCCCCTGTGCCCAGAGACAGACATTCCACAGGATTTGCCCCCTGTTGGCTTTCGTTGGGTAGGTGCGCGCACACAAAGTGAGAATGCTACACGCTGTCTTAAGCAGTACAGGGATGAACTGAACCTGCAGCGAGCTGATCAGGTGAAGTGGGAGCCCTACTTGCACATTGAGTCTTCAAGCTTGCCATTGCTTTGTACAAAAGATGCAGATTTGTGGCTTACACAAGCTCCACTAATAAATTTTCCTATAGTCGAGATGTATTTGCCTGAGCGAGTGATGCGGCAATTTGGGCTTCGCCAATCCATTCCACCACCTTTTCGACCTACCCTACAGGCGCTGCATCGTATTAGTCGACGTGGCAGAGAACGTGAGAACTGGGAAGAGACACATCATGAGTACATTCAGGAATGGGAAGCCCGCCGGCAGCGCATATTTCCAGAGTCAGAGCAGTATGACCCATCGTCTTATGAGGAGTACCTGCATTGGTACTCAGGAGTTACACGGCGGTATCTTGTACCATCAATCAGTGATGATGTGGAAGCAGGACCTTCATTACAGCCTGATGATTCCATTGATCTGCAGTATCAAGCCAAGGCTCCTATGATCCGCAAAGCAGTTGATAAACTGCACGGTATGGTAAAGAAGGCCAAGATGGCCATGACATCCACAGCTGATACAACCAAACAAGCCTTGGTCTTTGAGTTTCTGCATGGCTTTCAGGATGTTCTCCATGACCTTGGCGAGATCAAGGAAAATGGTGGTTCCGCTACTAGTCCACATGTTGAATCAGCTGCCGCTCAAGACTACTTTTGCTAG
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| Protein seq | MSSRRGGGGRRGRGRGRGRSALAENDMDFHETSAPSSPSTTSDKEDNIEFTSQQPCLVSPAAEHVSNTLLNPKINHRSDAIFGDQAVEQLKLRHHKPLKFHERYRPYLRDAGLLGLSQICQKMPQLDKALITALVERWRPETHSFHLASGEMAVTLQDVAMLLALPIDGRPVCSTTDHDYAQMVIDCLGHDPRGPSMPGKSFLHYKWLKKHFYELPEGADDQTVERHVRAYILSLLCGVLFPDGTGRMSLIYLPLIADLSRVGTYSWGSAVLAFLYRSLCSVASSHNIKNIGGSLLLLQLWSWERSHVGRPLVRSPLCPETDIPQDLPPVGFRWVGARTQSENATRCLKQYRDELNLQRADQVKWEPYLHIESSSLPLLCTKDADLWLTQAPLINFPIVEMYLPERVMRQFGLRQSIPPPFRPTLQALHRISRRGRERENWEETHHEYIQEWEARRQRIFPESEQYDPSSYEEYLHWYSGVTRRYLVPSISDDVEAGPSLQPDDSIDLQYQAKAPMIRKAVDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAAAQDYFC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.600585 | 0.861688 | 0.440469 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0738500 | RBH | 0.888727 | 1.284918 | 1.712733 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g34670 | RBH | 1.714104 | 1.666260 | 0.619256 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0738500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032970 | RBH | 0.069180 | 2.739969 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032470 | RBH | 0.0 | 0.000000 | 0.214698 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032900 | RBH | 0.0 | 0.000000 | 0.539550 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032180 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031880 | RBH | 2.254815 | 2.975094 | 3.678634 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0511900 | RBH | 1.545853 | 1.639233 | 1.9428505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031580 | RBH | 0.104808 | 0.000000 | 0.040821 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0505600 | RBH | 1.1757505 | 1.3232665 | 4.6559175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031810 | RBH | 0.028753 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031860 | RBH | 0.000000 | 0.541856 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032050 | RBH | 1.301510 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032190 | RBH | 0.302504 | 0.170163 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031980 | RBH | 0.126395 | 2.898646 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032440 | RBH | 0.000000 | 0.720171 | 0.776462 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032090 | RBH | 0.272975 | 4.603209 | 0.764548 |
