Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0019390 | OGI:01061460 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:20589494-20591851 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagttaggattttccagatgtccatcttgatcaacactagtgctttgctgtgggattgcagagcctggagcaggagtggctgtatcacactcatcgatggctggtgtagctgagtgactgtgttcctccaactccagtgaaggacatgggcagatgacattgttgaaaccattatcctcctcatccataggctcgagggtcattgttgcatcatccaccatgtgaagctcttcctcttcctgatgctgagcttcttgatcggcatcaacaatgttctgttcagcttctagcaaaagtagaggcatgtcttgagcggcagctgattcaacatgtggactagtagcggaaccaccattttccttgatctcgccaaggtcatggagaacatcctgaaagccatgcagaaactcaaagaccaaggcttgtgtggttgtatcagctgtggatgtcatggccatcttggccttctttaccataccatgcagtttatcaacctacaacaatcagcagacccttcgagttaaatatattagttaaattattcatggagtgattgtaaaactatttgaagtcttgcaaagacaacatatatctgacacaaatttaggtccaatcaactatagaaactgatcataggaactgaatagataatataggcttactgctttgcggatcataggagccttggcttgatactgaagatcaatggaatcatcaggctgtaatgaaggtcctgcttccacatcatcactgattgatggtacaagataccgccgtgtaactcctgagtaccaatgcaggtactcctcataagacgatgggtcatactgctctgactcgggaaatatgcgctgccggcgggcttcccattcctgaatgtactcatgatgtgtctcttcccagttctcacgttctctgccacgtcgactaatacgatgcagcgcctgtagggtaggtcgaaaaggtggtggaatggattggcgaagcccaaattgccgcatcactcgctcaggcaaatacatctcgactatcggaaaatttattagtggagcttgtgtaagccacaaatctgcatcttttgtacaaagcaatggcaagcttgaagactcaatgtgcaagtagggttcccacttcacctgatcagctcgctgcaggttcagttcatccctgtactgcttaagacagcgtgtagcattctcactttgtgtgcgcgcacctacccaacgaaagccaacaggtggcacatcctgtggaatgtctgtctctgggcacaggggagaccggaccaatggtctgccaacatgggagcgctcccagctccaaagctgcaagagaagcaatgaaccaccaatgttcttgatattgtgggaggaagcaacagaacaaagagaacggtataggaaggccagcactgcagatccccagctgtatgtcccaacacgagaaagatcagcaatcaatggaagatatatcagactcatccgtcctgttccatctggaaatagcaccccgcataaaaggctcaggatatatgctcgaacatgcctctccacagtctgatcatctgctccttctggtaattcatagaaatgcttcttcagccatttgtagtgcagaaaagattttccaggcattgatggtcctcttggatcatgacctagacaatcaatgaccatctgcgcataatcatgatcagtggtagaacaaactggacggccatcgataggaagagctaacaacattgctacatcttgtagtgtaactgccatctccccagaagccaagtggaaactatgagtttctggtctccaacgctcaacaagggcagtgatcaatgccttgtccaattgaggcatcttctggcaaatttgtgagagcccaagaaggccagcatccctcaaataaggacggtatctctcatgaaattttaaaggtttgtgatgtcgcaacttcaactgctccacagcctgcaaaaaacatgacctcagtggcactgcgaagtttattctgcctacaataacttgtttacttatgcaactctgacaaaacttaattgctcttggattaacctgatcaccgaagattgcatccgatcggtggttgatcttagggttgagtaatgtgttggatacatgctctgctgctgggcttacaagacaaggttgatgcgaagtgaactcgatattgtcctctttatcagaagtagtgctcggggaagaaagtgcagaggtttcatgaaagtccatatcattttctgccaaagcacttctcccacggccacggccacgaccacggcggccaccacctcctctccttgaagacatggtcttgtactgttcctgttttgaaaaattcat
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| CDS seq | atgaatttttcaaaacaggaacagtacaagaccatgtcttcaaggagaggaggtggtggccgccgtggtcgtggccgtggccgtgggagaagtgctttggcagaaaatgatatggactttcatgaaacctctgcactttcttccccgagcactacttctgataaagaggacaatatcgagttcacttcgcatcaaccttgtcttgtaagcccagcagcagagcatgtatccaacacattactcaaccctaagatcaaccaccgatcggatgcaatcttcggtgatcagaactgggaagagacacatcatgagtacattcaggaatgggaagcccgccggcagcgcatatttcccgagtcagagcagtatgacccatcgtcttatgaggagtacctgcattggtactcaggagttacacggcggtatcttgtaccatcaatcagtgatgatgtggaagcaggaccttcattacagcctgatgattccattgatcttcagtatcaagccaaggctcctatgatccgcaaagcagttgataaactgcatggtatggtaaagaaggccaagatggccatgacatccacagctgatacaaccacacaagccttggtctttgagtttctgcatggctttcaggatgttctccatgaccttggcgagatcaaggaaaatggtggttccgctactagtccacatgttgaatcagctgccgctcaagacatgcctctacttttgctagaagctgaacagaacattgttgatgccgatcaagaagctcagcatcaggaagaggaagagcttcacatggtggatgatgcaacaatgaccctcgagcctatggatgaggaggataatggtttcaacaatgtcatctgcccatgtccttcactggagttggaggaacacagtcactcagctacaccagccatcgatgagtgtgatacagccactcctgctccaggctctgcaatcccacagcaaagcactagtgttgatcaagatggacatctggaaaatcctaactaa
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| Protein seq | MNFSKQEQYKTMSSRRGGGGRRGRGRGRGRSALAENDMDFHETSALSSPSTTSDKEDNIEFTSHQPCLVSPAAEHVSNTLLNPKINHRSDAIFGDQNWEETHHEYIQEWEARRQRIFPESEQYDPSSYEEYLHWYSGVTRRYLVPSISDDVEAGPSLQPDDSIDLQYQAKAPMIRKAVDKLHGMVKKAKMAMTSTADTTTQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAAAQDMPLLLLEAEQNIVDADQEAQHQEEEELHMVDDATMTLEPMDEEDNGFNNVICPCPSLELEEHSHSATPAIDECDTATPAPGSAIPQQSTSVDQDGHLENPN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0019390 | OsLima_01g0019390.01 | Chr01 | 20589494 | 20591851 | - | NAM | ||
| CDS seq | atgaatttttcaaaacaggaacagtacaagaccatgtcttcaaggagaggaggtggtggccgccgtggtcgtggccgtggccgtgggagaagtgctttggcagaaaatgatatggactttcatgaaacctctgcactttcttccccgagcactacttctgataaagaggacaatatcgagttcacttcgcatcaaccttgtcttgtaagcccagcagcagagcatgtatccaacacattactcaaccctaagatcaaccaccgatcggatgcaatcttcggtgatcagaactgggaagagacacatcatgagtacattcaggaatgggaagcccgccggcagcgcatatttcccgagtcagagcagtatgacccatcgtcttatgaggagtacctgcattggtactcaggagttacacggcggtatcttgtaccatcaatcagtgatgatgtggaagcaggaccttcattacagcctgatgattccattgatcttcagtatcaagccaaggctcctatgatccgcaaagcagttgataaactgcatggtatggtaaagaaggccaagatggccatgacatccacagctgatacaaccacacaagccttggtctttgagtttctgcatggctttcaggatgttctccatgaccttggcgagatcaaggaaaatggtggttccgctactagtccacatgttgaatcagctgccgctcaagacatgcctctacttttgctagaagctgaacagaacattgttgatgccgatcaagaagctcagcatcaggaagaggaagagcttcacatggtggatgatgcaacaatgaccctcgagcctatggatgaggaggataatggtttcaacaatgtcatctgcccatgtccttcactggagttggaggaacacagtcactcagctacaccagccatcgatgagtgtgatacagccactcctgctccaggctctgcaatcccacagcaaagcactagtgttgatcaagatggacatctggaaaatcctaactaa
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| Protein seq | MNFSKQEQYKTMSSRRGGGGRRGRGRGRGRSALAENDMDFHETSALSSPSTTSDKEDNIEFTSHQPCLVSPAAEHVSNTLLNPKINHRSDAIFGDQNWEETHHEYIQEWEARRQRIFPESEQYDPSSYEEYLHWYSGVTRRYLVPSISDDVEAGPSLQPDDSIDLQYQAKAPMIRKAVDKLHGMVKKAKMAMTSTADTTTQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAAAQDMPLLLLEAEQNIVDADQEAQHQEEEELHMVDDATMTLEPMDEEDNGFNNVICPCPSLELEEHSHSATPAIDECDTATPAPGSAIPQQSTSVDQDGHLENPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.066312 | 0.118430 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0531200 | RBH | 2.533496 | 2.506163 | 2.433559 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g34670 | RBH | 1.714104 | 1.666260 | 0.619256 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0531200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020080 | RBH | 0.767015 | 0.000000 | 3.527519 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019700 | RBH | 0.158599 | 0.864534 | 0.902029 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020050 | RBH | 0.323223 | 0.000000 | 5.675230 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019410 | RBH | 0.209123 | 0.097097 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031880 | SBH | 2.254815 | 2.975094 | 3.678634 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0326500 | RBH | 4.9296385 | 12.465568 | 12.353702 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019390 | RBH | 0.384786 | 0.590040 | 0.837998 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0325000 | RBH | 3.8850525 | 6.7151455 | 12.542957 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031810 | SBH | 0.028753 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019300 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019560 | RBH | 0.295324 | 9.996666 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019320 | SBH | 0.256167 | 0.309924 | 1.483081 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019210 | RBH | 0.000000 | 1.104307 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019720 | RBH | 0.773169 | 2.600666 | 2.012181 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019430 | RBH | 0.000000 | 15.420511 | 1.800550 |
