Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0667600 | OGI:01083220 | 12/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:27301548-27302922 | ||||||||
| Gene Symbol | OsRab11C1 | ||||||||||
| DNA seq | AAAAGAAGAGAGAACGCGCCGCGCCGCGCCGAGCCGCGTGGGTATAATTGAAGGGAAGCGGTGCGCTCGCTCGCTGCATCCAGCTCAACGCGCGGGGGAGGCGGAGCGAATCGGCGGATCGGTGGGTTGCGGGCTTGCACGTAGTCGAGGCTCGAGAGGAGGGGGGGATGGCGGCGGCGGCGGCGGCGGCGGGGTACAGGGCGGAGGAGGAGTACGACTACCTGTTCAAGGTGGTGCTGATCGGGGACAGCGGCGTGGGGAAGTCGAACCTGCTGTCGCGGTTCGCGCGGGACGAGTTCAGCCTGGAGACCAGGTCCACCATCGGCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGACAGGCTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAGAGGTACCATTACTTTGCTCTGCTTCCATCGTCTCCAATCTCATCTGTAGCTTGGCTATATTCACCATCTTCCCCTGCTTCTGCTCTCTCGATTTCGCTACTTGTAGATTGATTGGTGACCATCATCCCTGCTTCTGTTCTCTCGTTTTCGCTACTAGTAGATTGATTGGTGATTTCTAGTAGCACAACTCCATTTTCAATCAACGACTCCATTTAGTCCATCATTGGTAGAACGATTCATGTGCTCCAGTGAGCAAAATCACACGCATGGCTTCTCTTGCGCATTTCCACAAAAACCTTTACGTGTTCAACTCGCTATGCTTCACTTTTGCGCAATGGATTGGATTGGATATCCCTTTGATATTTGGATTGACCTCGTTGGCTTCCCCCCCCCCCCCCAGGTACCGCGCCATCACGAGCGCCTACTACCGCGGCGCGGTGGGCGCGCTGGTGGTGTACGACGTGACGCGCCGCATCACGTTCGAGAACGCGGAGCGGTGGCTCAAGGAGCTCCGCGACCACACGGACGCCAACATCGTCGTCATGCTCGTGGGCAACAAGGCCGACCTGCGCCACCTCCGCGCCGTCCCCGCGGAGGACGCCAGGGCGTTCGCCGAGGCGCACGGGACCTTCTCCATGGAGACGTCGGCGCTGGAGGCCACCAACGTGGAGGGCGCCTTCACCGAGGTGCTCGCGCAGATCTACCGCGTCGTCAGCCGGAACGCGCTCGACATCGGCGACGACCCCGCCGCGCCGCCCCGGGGGCGGACCATCGACGTCAGCGCCAAGGATGACGCCGTCACCCCCGTGAACAGCTCAGGGTGCTGCTCGTCTTGACTTTGACTCGCTCAAACTCATCGTCGTCGAGCTATGCAAATTGCCACCGTTCACAGCTTTGTTTATACCGTGTGTTTTCGTCACTGCTGATTGATACTACAAACTTGAGAATTGGGATCAAAAGGTTGCATTTTG
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| CDS seq | ATGGCGGCGGCGGCGGCGGCGGCGGGGTACAGGGCGGAGGAGGAGTACGACTACCTGTTCAAGGTGGTGCTGATCGGGGACAGCGGCGTGGGGAAGTCGAACCTGCTGTCGCGGTTCGCGCGGGACGAGTTCAGCCTGGAGACCAGGTCCACCATCGGCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGACAGGCTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAGAGGTACCGCGCCATCACGAGCGCCTACTACCGCGGCGCGGTGGGCGCGCTGGTGGTGTACGACGTGACGCGCCGCATCACGTTCGAGAACGCGGAGCGGTGGCTCAAGGAGCTCCGCGACCACACGGACGCCAACATCGTCGTCATGCTCGTGGGCAACAAGGCCGACCTGCGCCACCTCCGCGCCGTCCCCGCGGAGGACGCCAGGGCGTTCGCCGAGGCGCACGGGACCTTCTCCATGGAGACGTCGGCGCTGGAGGCCACCAACGTGGAGGGCGCCTTCACCGAGGTGCTCGCGCAGATCTACCGCGTCGTCAGCCGGAACGCGCTCGACATCGGCGACGACCCCGCCGCGCCGCCCCGGGGGCGGACCATCGACGTCAGCGCCAAGGATGACGCCGTCACCCCCGTGAACAGCTCAGGGTGCTGCTCGTCTTGA
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| Protein seq | MAAAAAAAGYRAEEEYDYLFKVVLIGDSGVGKSNLLSRFARDEFSLETRSTIGVEFATKTVRVDDRLVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRRITFENAERWLKELRDHTDANIVVMLVGNKADLRHLRAVPAEDARAFAEAHGTFSMETSALEATNVEGAFTEVLAQIYRVVSRNALDIGDDPAAPPRGRTIDVSAKDDAVTPVNSSGCCSS |
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| Function | Ras-related protein RABA1f [UniProtKB/Swiss-Prot:Q9FJH0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0667600 | Os01t0667600-01 | Chr01 | 27301548 | 27302922 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGCGGCGGCGGCGGCGGCGGGGTACAGGGCGGAGGAGGAGTACGACTACCTGTTCAAGGTGGTGCTGATCGGGGACAGCGGCGTGGGGAAGTCGAACCTGCTGTCGCGGTTCGCGCGGGACGAGTTCAGCCTGGAGACCAGGTCCACCATCGGCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGACAGGCTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAGAGGTACCGCGCCATCACGAGCGCCTACTACCGCGGCGCGGTGGGCGCGCTGGTGGTGTACGACGTGACGCGCCGCATCACGTTCGAGAACGCGGAGCGGTGGCTCAAGGAGCTCCGCGACCACACGGACGCCAACATCGTCGTCATGCTCGTGGGCAACAAGGCCGACCTGCGCCACCTCCGCGCCGTCCCCGCGGAGGACGCCAGGGCGTTCGCCGAGGCGCACGGGACCTTCTCCATGGAGACGTCGGCGCTGGAGGCCACCAACGTGGAGGGCGCCTTCACCGAGGTGCTCGCGCAGATCTACCGCGTCGTCAGCCGGAACGCGCTCGACATCGGCGACGACCCCGCCGCGCCGCCCCGGGGGCGGACCATCGACGTCAGCGCCAAGGATGACGCCGTCACCCCCGTGAACAGCTCAGGGTGCTGCTCGTCTTGA
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| Protein seq | MAAAAAAAGYRAEEEYDYLFKVVLIGDSGVGKSNLLSRFARDEFSLETRSTIGVEFATKTVRVDDRLVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRRITFENAERWLKELRDHTDANIVVMLVGNKADLRHLRAVPAEDARAFAEAHGTFSMETSALEATNVEGAFTEVLAQIYRVVSRNALDIGDDPAAPPRGRTIDVSAKDDAVTPVNSSGCCSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0667600 | RBH | 1.713658 | 1.793039 | 3.470436 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47730 | RBH | 1.050151 | 0.981042 | 0.767393 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0564400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033660 | SBH | 0.000000 | 0.0 | 5.283119 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033180 | SBH | 0.114804 | 2.883125 | 0.436839 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033620 | SBH | 0.0 | 6.315755 | 1.388507 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032880 | SBH | 0.0 | 0.645958 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027400 | RBH | 4.307802 | 0.000000 | 0.936832 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0455300 | RBH | 4.3635785 | 82.518677 | 4.55166 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027100 | RBH | 0.247023 | 0.000000 | 0.060867 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0444200 | RBH | 4.8799445 | 87.411167 | 4.0683375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027350 | RBH | 0.000000 | 0.269459 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027270 | RBH | 0.412533 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027590 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027660 | RBH | 0.613906 | 0.198774 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027470 | RBH | 0.383632 | 5.069834 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027860 | RBH | 0.129525 | 2.209453 | 0.732289 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027600 | RBH | 0.754890 | 13.013286 | 0.634663 |
