Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0033180 | OGI:01094790 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:31573763-31577311 | ||||||||
| Gene Symbol | OsRab11C1, OsRab11D2 | ||||||||||
| DNA seq | acaaattaaaaccccactggccactggcgcaagaaaaccgagcaagctcagctcagctgtcacggtgtcacctgtcagcgcccacaactgctcgctccgtcctccaaagcccgcgagatccaaagccgaacgccactagctagctgagagagaagcgccggccggcgagggggctagtgcgcgggaatggcggcgggcggaggcggcggctacagggcggaggacgactacgactacctgttcaagacggtgctcatcggcgactccggcgtgggcaagtccaacctgctgtcgcgtttcaccaagaacgagttctgcctcgagtccaagtccaccatcggggtcgagttcgccacccgcagcatccaggtcgacggcaaggtcgtcaaggcccagatttgggacaccgccggccaggagaggtacgtacggcctctcccttcctctcctactctagccgcttcccgcgttggtgcgcaaatgggtagtgcatcgagtgtgttctgctagatttgctgctggccgcatgctcatggatttctcttggaagttagagtgcgacgtagccgataattttcctgcagattgtttgtaggcgcttcgctattgcttggttttggttaaaaaaaatgtgaactttggttgtcgtcgttgtcgattttaatttcttgtttgaactagttcggtgctgatgatattagagcattaatattgtaaatttgaccttgatagttcctgcacgaatttggcatggaaccgaaagtgtagtgagtgccaattcacatctggctggttctcctggagggtagattactagattgggaggtgacacgtggtttggctgttgggacgtccatgtctgtttcattcgagattaatggttcgagagtgaaaccaccaaaaatcgttgttgtgttctagcgaaagtggttgctgtgtcgtcttccattcgaagtttatagaggaagcagaggaaatgctatgtgtcaaaaatgcagtgatgctagtttagctgcagtgttaactgggggacaggtgtttcacaggtgttagaggacttattgataagtgcggccccagcggcgaaatggtcgctattgagggcttctattgctatggatctcaagagtagaaagtgccattgtggtcacgacatttctgcatcatgaggagtgcataaatacgcatcaaaagcatactttggttcccggcttatgtagtgtatacctaactacctaacgcactgtattgcaataccacacagttttattgatattgctttggagccttggagggggagtataaatcgagaagatcatcctaattggacagtgcaaaactttgttcgtactatatagaaacttttggttcattataagtctctctgaattatggataagaatagttctgtcagaaatactaggtccatatggtttctttagagaggttgggggaggcccatcactcaatttttatacaacaataaaacttattggccgtgtgcagtgtgcttgttagcagaggcaagagatttaaaccatttccacatctaaaaaagaatacaattttatattaagaaaacaccttgcatgctattgtaaattaaagtctaagaaactagtaaatctatatccgagacaatcatagaatgcaaaatacacatagactgacttgggtggggacgtggggtgaactaggattggttggcaattttaacaacaaaatcacaaagctttcacagaaaattttataatgtataacttgtgctataccagtgccttatttttctgctatagtttctatttggatccttaatatttctaaattccacattcctgttataccataaagacgcctcagcaaccaagccaatcacacattcacaaaaagcaaccttgcttactgaccttgacctgagatgttgactgtgagtttggcggttgtttgctccattccaataatctgttacccgctcgtgcaatttggtgtgttgtacagtcacaccatgttgatgtgaatgactagagcttaaatcctagatctggacttggcgaaggggaacaggaaaagatggcctgccccttatggccttagggcacccgcaatggttatctataggttctctacaagagatctatgtcagcatattttcctacttggaatagattgaatgaagagagagagcaaagctatctactaacctggagataatctatagagaaaaacgaggcaatggattagagagctatagatacccatgtagacatactattgaggtggtttactattaatttagtctattgctgagatgtacatgttttatagagagcaccttactttaccatagcttggccttttctttattatcaatcactacatgcatgccatgtgtctatcacatattactgtagcaacacattggcagcactttttaacctaggaaataacaaataaggcatcataatgttccttctaatatcaaatgttcatgccaattgtttttagttctgttgtttgtggacaattttgaacatgtttgctattggaatcagaattactacctccatcccacgaagaatttatttgtagcagttctcacactgattgcagattagtactgtgagggaatggcttaggttccccttgttattaatagttggagaatgtgtgtgtgagagagtatgttgatttgtggagtgagtagggtcagagctaaaagtaaattgttcgtggacaaattttgaatgctaaaagtaaactctttgtggaacagtgggagtagctgatccttctttatgattttctttagtgcataattatatgattacctaatattttccttctgttggcagataccgtgctattacaagtgcctattacagaggagcagtaggtgcactgcttgtctatgatgtcactcggcgtgctactttcgataatgtggcacgctggctaaaagagctgagagaccacactgaccctagtattgttgtcatgctagtaggcaacaaatccgatctccgccatctggtggctgtttcaactgaagatggaaaggaatatgctgaggctgagtcattgtacttcatggagacatctgcattagacgccacaaatgtagagaatgcttttgcagaagttttgactcagatataccaaactgtcagcaagaagacggttgaggcatcagatgatggatcaaatgctccaatcaaaggagagaagattaatgtgaaagatgacgtgtctgcgctgaagagaattggctgttgctcaaattagagtagagatgcatttcttgttgattttttccactaggtgtacggctgtatgttgcttctattgaaagaggtccattaattttcattttgttgtggtgatattgagagttagattgttccaactttcagttataccatttcttgaaagtcttaactcaagacagctcctttcgtcagattggttactgtattcgacataattctgcaaaacatttgtttacagtgggaacctggcaatatttcggggcattctgacagccttctgaac
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| CDS seq | atggcggcgggcggaggcggcggctacagggcggaggacgactacgactacctgttcaagacggtgctcatcggcgactccggcgtgggcaagtccaacctgctgtcgcgtttcaccaagaacgagttctgcctcgagtccaagtccaccatcggggtcgagttcgccacccgcagcatccaggtcgacggcaaggtcgtcaaggcccagatttgggacaccgccggccaggagagataccgtgctattacaagtgcctattacagaggagcagtaggtgcactgcttgtctatgatgtcactcggcgtgctactttcgataatgtggcacgctggctaaaagagctgagagaccacactgaccctagtattgttgtcatgctagtaggcaacaaatccgatctccgccatctggtggctgtttcaactgaagatggaaaggaatatgctgaggctgagtcattgtacttcatggagacatctgcattagacgccacaaatgtagagaatgcttttgcagaagttttgactcagatataccaaactgtcagcaagaagacggttgaggcatcagatgatggatcaaatgctccaatcaaaggagagaagattaatgtgaaagatgacgtgtctgcgctgaagagaattggctgttgctcaaattag
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| Protein seq | MAAGGGGGYRAEDDYDYLFKTVLIGDSGVGKSNLLSRFTKNEFCLESKSTIGVEFATRSIQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFDNVARWLKELRDHTDPSIVVMLVGNKSDLRHLVAVSTEDGKEYAEAESLYFMETSALDATNVENAFAEVLTQIYQTVSKKTVEASDDGSNAPIKGEKINVKDDVSALKRIGCCSN |
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| Function | Ras-related protein RIC2 [UniProtKB/Swiss-Prot:P40393] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0033180 | OsKeNa_01g0033180.01 | Chr01 | 31573763 | 31577311 | + | NAM | ||
| CDS seq | atggcggcgggcggaggcggcggctacagggcggaggacgactacgactacctgttcaagacggtgctcatcggcgactccggcgtgggcaagtccaacctgctgtcgcgtttcaccaagaacgagttctgcctcgagtccaagtccaccatcggggtcgagttcgccacccgcagcatccaggtcgacggcaaggtcgtcaaggcccagatttgggacaccgccggccaggagagataccgtgctattacaagtgcctattacagaggagcagtaggtgcactgcttgtctatgatgtcactcggcgtgctactttcgataatgtggcacgctggctaaaagagctgagagaccacactgaccctagtattgttgtcatgctagtaggcaacaaatccgatctccgccatctggtggctgtttcaactgaagatggaaaggaatatgctgaggctgagtcattgtacttcatggagacatctgcattagacgccacaaatgtagagaatgcttttgcagaagttttgactcagatataccaaactgtcagcaagaagacggttgaggcatcagatgatggatcaaatgctccaatcaaaggagagaagattaatgtgaaagatgacgtgtctgcgctgaagagaattggctgttgctcaaattag
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| Protein seq | MAAGGGGGYRAEDDYDYLFKTVLIGDSGVGKSNLLSRFTKNEFCLESKSTIGVEFATRSIQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFDNVARWLKELRDHTDPSIVVMLVGNKSDLRHLVAVSTEDGKEYAEAESLYFMETSALDATNVENAFAEVLTQIYQTVSKKTVEASDDGSNAPIKGEKINVKDDVSALKRIGCCSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.114804 | 2.883125 | 0.436839 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0750000 | RBH | 0.0 | 0.282943 | 3.551372 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g54590 | RBH | 0.0 | 0.204461 | 1.010518 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0750000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033660 | RBH | 0.000000 | 0.0 | 5.283119 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023550 | RBH | 0.0 | 4.359910 | 1.618271 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033620 | RBH | 0.0 | 6.315755 | 1.388507 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032880 | RBH | 0.0 | 0.645958 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032660 | RBH | 4.287957 | 21.182253 | 2.671923 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0521300 | RBH | 10.4585665 | 7.155698 | 6.2585255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032370 | RBH | 0.0 | 1.511024 | 0.169719 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0515900 | RBH | 9.5289675 | 1.7419535 | 10.741514 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032550 | RBH | 0.117432 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032610 | RBH | 0.355880 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032850 | RBH | 0.0 | 5.846533 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032950 | RBH | 0.174220 | 1.229814 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032740 | RBH | 0.207239 | 2.607322 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033210 | RBH | 0.0 | 3.637774 | 3.940525 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032820 | RBH | 0.0 | 26.010826 | 1.550178 |
