Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0564400 | OGI:05075970 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:28092844-28094569 | ||||||||
| Gene Symbol | OsRab11C3 | ||||||||||
| DNA seq | GCTACTGAAAAATAGACAGCAACATATAAATAAATCAAGCGGTCAAACCATAATAGAAGCAAACAAATGGCCTGTATGAAAATCTGACGGCCTCACAATTTCATATCCCTAAACTATACCGGCAAGATTATGTCCTGAATGAATTAATGTTTCAAATGGCAAAACGAAGGAGACACTTAGTAACACATGAATACAGATGAGGTCTATGAATGCAATAACATCCTGTGTCCTACTGCATAGTATCAACCACCTCGGGTATCTCCATGTTTGTCAAGTCCTTTCGATCTACGCTGATGAACAACAAGCAGACTTTTTCACTGCAGAGACATCATCTTTGCCACCAACATTGATGGTCTGCCCCTTTGGTGGTGCAGCTGGGTCATCGCCGATGTCAAGAGCCTTCTTGCTCACTACATGATATATCTGGGTGAGCACTTCAGTGAAGGCATTCTCCACATTCATTGACTCCAGGGCCGACGTCTCCATGAAGAAAGTGTTCTCTTTCTCAGCAAATGCTTTCGCATCCTCAGTCGAGACAGCCCTAAGGTGGCGCAAATCTGCCTTGTTCCCCACAAGCATGATCACGATGTTGGCGTCCGTGTGATCCTTGAGCTCCCTCATCCACCTCTCCACATTCTCAAAGGTGACATGTCGCGTGACATCATAGACAACGAGTGCCCCTACTGCTCCGCGATAGTATGCGCTTGTAATAGCTCGATATCTACAGAAGCAACACAAAATTATGATAATTTGCTGTGCAGGAACTAATTAATAAACAGCAAAAGCGCATGAAACAACATTCCATCAAGCACAGCAGGCAATAATATGCCGCATACTCCATGACTCCATCAATCTAACTGTTCAGCACAGGGCATTGGCCATAAAGAACTTTTTGTCCCCAATCTACACACTTCCTAACTCCATGATAATCTAGATGTCTGTACAATAACAATTTCCTATGATAATCTAGATGCCAGTACGACAACAACCTATTCTATGCCAATGCCTGGTCCTACACAATCTTTGCCTACAATATCTTAAAATTTATATAAAAATGTCATGGCCTGGGGCATTTTAGGGTGTAATCAAGGAAGTCTATGAATTGAAAGAATGCCAAATTATCACTCTTCTTCTTAATCCTACACAAGGATTTAATCACGCCAATCATATGAGCGCGGCAATTAAATATCACCCGAAATCAGAGATCCACACGAGAGAAACCCACTAATCGCCAACGATTAACGAATGGCCTAGCCTAATCTAACAAGCAGATCAGGATGAGCGGAGCTCGCGGGGGCACAGGCGGATCTGGGGTGGTGTTTACCTTTCTTGCCCGGCGGTGTCCCAGATCTGGGCCTTGACGACCTTGTCGTCGACGTGGATGCTGCGGGTGGCGAACTCGACGCCGATGGTGGACTTGGACTCGAGGCTGAACTCGTTGCGCGTGAAGCGGGACAGCAGGTTCGACTTCCCGACCCCGGAGTCCCCGATGAGCACCACCTTGAAGAGGTAGTCGTAGTCGTCGTCCGCCCGGTACGCCATCGTTCGGTCACACCCCCCACGAACTCAACCTTCTCGCCGCCGGCGCTGCGCGGCGAGGGGGCGGAGCGGATGGGAGCGAAGGGCGGAGGGGGAGGGGAGGGGAGGGGAGAGCGTTTGTCGCGGTGGGTGCGGATCGATCTCGGTCTCTCCTCTCCCCAACTTTTTTGGGTGGCTTTGTTTGTGC
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| CDS seq | ATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAG
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| Protein seq | MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWMRELKDHTDANIVIMLVGNKADLRHLRAVSTEDAKAFAEKENTFFMETSALESMNVENAFTEVLTQIYHVVSKKALDIGDDPAAPPKGQTINVGGKDDVSAVKKSACCSSA |
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| Function | Ras-related protein RABA1f [UniProtKB/Swiss-Prot:Q9FJH0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0564400 | Os05t0564400-02 | Chr05 | 28092844 | 28094569 | - | irgsp1_rep | ||
| CDS seq | ATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAG
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| Protein seq | MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWMRELKDHTDANIVIMLVGNKADLRHLRAVSTEDAKAFAEKENTFFMETSALESMNVENAFTEVLTQIYHVVSKKALDIGDDPAAPPKGQTINVGGKDDVSAVKKSACCSSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0564400 | RBH | 0.341222 | 0.537621 | 6.121192 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48980 | RBH | 0.224748 | 0.361468 | 1.534715 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0667600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027050 | RBH | 0.000000 | 15.892058 | 12.796082 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026840 | RBH | 0.000000 | 5.765345 | 6.327389 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026830 | RBH | 0.999186 | 33.361744 | 18.449007 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026890 | RBH | 0.0 | 1.520035 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026820 | RBH | 2.334724 | 47.815296 | 23.199888 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0437300 | RBH | 9.4964815 | 21.6620775 | 5.963402 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026480 | RBH | 0.113763 | 4.921991 | 4.145270 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0449200 | RBH | 10.2231165 | 9.9871375 | 22.503311 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0026660 | RBH | 0.0 | 0.363364 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026540 | RBH | 1.279817 | 22.078709 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026730 | RBH | 0.0 | 44.369671 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026780 | RBH | 0.220485 | 3.196937 | 2.447330 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026790 | RBH | 0.0 | 19.113428 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026260 | RBH | 0.290489 | 18.029842 | 6.601193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026790 | RBH | 0.568478 | 41.069305 | 23.901356 |
