Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0602500 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:23682892-23685395 | ||||||||
| Gene Symbol | CYP72A31, CYP72A33, _ | ||||||||||
| DNA seq | CTGAACTCATATGAATGAAATGGTATTATCAATTAAATCCTACAAGATACTAACAATTTTGAGGCGGCTCAGGCCATCATAGTCTGGTTTATTCTTCCCAAATAGTCCTAAGATCTCTTCCCTTGCACGATCCTGCCACTCGGGGTGCATGCTTAATAGCAGCATGGTCCATGTGAGAAGCACTGATGTTGTATCCGCTCCTGCAAAGTAGAATAGCTTGCATTCCTCCATGATATCCTTGATTGTCAAGCCTTGGTTTGATTGACCATTCACTTCCATGTGTCTCGTGTTTGACTCAAGCAATATACCAAGTAAATCATCTTTTGTGCTTTCACCTTCTTTCATAGCTTGCATTCTTTTCCCAATCATACCCCTCAGAATCGATTCGATCTCTTTATTCATTTGATGCATCTTCCGGTTGTTCTCAGTAGGCAAATACCTGAAATGGAGAATATATCCAATCAATAATTTGAGGTCGTCACAACCTTATTTGAGTGGTAATTAAAATTTTAAACTTGCTGAACGGATTAGGATTAAATTGTATGGTCGATGATGTCAAAACTTTTCTAACCATTAGGAGGTATAGAGACTAGAGATACATATGTCCTTCCCGACTAATATTAAATACCCATAGCTCTCAAAGACTAAAGCCGTGTTTAGATTCCAACTTTTTTTCTTTAAACTTCCAATTTCTCCGTCACATCAAATGTTTGGACACATATATGTAGCATCAATTGTGGACGAAAAAAACCAATTGCACAGTCCGACTGTAAATTGCGAGGCGAATATTTTGAGCCTAATTACGCCATGATTTGATAATGTGATACTACAGTAAACATTTGCTAATGACTGATTAATTATACTTAATAAATTCTTCTCGCAGTTTACAGGCAAAATCTGTAATTTATTTTGTTATTAGTCTACATTTAATATTTCAAATGTGTGTCCGTATATTTAAAAAAAATTGGCACACGAACTAAACACAGCCTAAAGAAAAACTCAACAACAGATACTAAACTGGATTTTCAATCCGATTAGTTTTTTACTCTTTTTTTTGGAGATCATGTATCCCAAAGTAATGAGGAGATATATATCTTTCCAATGATAGGGGATATTTTAACAGGGAGAAATAAGATACGTGTACTTAAGACTGCTCAGTGTATAACCAAATAAATAGGCTCTCTATATTAAGTTAAGGACCAGGGAAATTAAATTACTCGGGTACTTTTTAAGTATTAAATTCTCACATGTAACCCGGGATGAACATCTTCTGGATGGATTTGATGACACGCTCAAATAGCTCGCCCTGCAGCTCGAAGATCCTTCTTCCTTCAAGATAGCTGCTTCCGAACGCGGTGCGCGAGATGACATCTCCAGTGAGGCTCTTGAACTCCGGCCAGCAATCCACCTCGTACGAGCCATCCGAACCAATGGACCCCATCCACCTGCTGATCAGCTCCTCGCAGCATGCTGAAAACACCGGCAGCATGAGCTGCACATTCTCCGACGACATTTCAATGATCAGATAAAGAAACAAAATTGACTAAACAAGATTTTTATAAAGTTCGATTAAATTTATAGAAAAAATATAGCAACACGTGTAACATCAAATTAGTCCAATTAAATCAAACATTGAATACATTTAGTCTTTGTTTTGTGTTGAAAATATTGCTATGGTTTTTTTAAAAAACTTGATTAAATTTAGAGAAGTTTGACTTAAAAATAATCAAAACTTATTATAATATAAAATAGGAGAATAGCTTGTACTAGTACAATATGTAACATTTAATATTTCTACGTATATACCATATTTCATCTATCCTATAATATAAGAGATTTTGGGTGGATACGACACATTCTAATATAATGATGAATCTAGACATACTAGGATGTGTCACATTCACTCAAAATAAACATATGGAGTAAGAGAGTGTAACTTTTTCTCTTAAATTCCATGTAAATGGTTGCAGGAAGTGGTACCTTGAGCTTCTCGAGCTGGAAAACCGGGTTGAGGATCCTCCTGTGCTTGGCCCACTTCTCGCCCTCGTGGGCGGACAGGCCTTGGGGGATCAGCTTCGATAGCTCCGGGAAACTGACCTTCTCGAAGTGGCCGAACTTGTTGGACAGGACGACCCTGGCCAGCTCGGGATCGGCGACGTGCACCTCCGGCGTCGGGCCGAACCAGGTGATGCGCGGCTTGCCGTGCGCCGCCCCGACGCCGACGGCGCCGTGGAGGAACGGCTCGACGCGCGGCGCGATGTCGTGGCACCGCAGCGGCAGCGGCCTCGCCCAGGCCTCCTTCCTCCGCCGGCCCTCCTCCGCGAGGTCGCCGGTGAGGAAGCGGTAGCGCGAGCCGCGGAGGCCCCGCGCCCGCAGCGCCTTCTCCAGCCGCCGCGGCCGCCACCACAGGCGGTGGAGCTGGAGGCCGGCCTGCCACGCGAGGACGAGGCCGACGAGACCGAACGCCGCGAGGATTGTTGGCGATGAGGCCGGAGCCCACATCG
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| CDS seq | ATGTGGGCTCCGGCCTCATCGCCAACAATCCTCGCGGCGTTCGGTCTCGTCGGCCTCGTCCTCGCGTGGCAGGCCGGCCTCCAGCTCCACCGCCTGTGGTGGCGGCCGCGGCGGCTGGAGAAGGCGCTGCGGGCGCGGGGCCTCCGCGGCTCGCGCTACCGCTTCCTCACCGGCGACCTCGCGGAGGAGGGCCGGCGGAGGAAGGAGGCCTGGGCGAGGCCGCTGCCGCTGCGGTGCCACGACATCGCGCCGCGCGTCGAGCCGTTCCTCCACGGCGCCGTCGGCGTCGGGGCGGCGCACGGCAAGCCGCGCATCACCTGGTTCGGCCCGACGCCGGAGGTGCACGTCGCCGATCCCGAGCTGGCCAGGGTCGTCCTGTCCAACAAGTTCGGCCACTTCGAGAAGGTCAGTTTCCCGGAGCTATCGAAGCTGATCCCCCAAGGCCTGTCCGCCCACGAGGGCGAGAAGTGGGCCAAGCACAGGAGGATCCTCAACCCGGTTTTCCAGCTCGAGAAGCTCAAGCTCATGCTGCCGGTGTTTTCAGCATGCTGCGAGGAGCTGATCAGCAGGTGGATGGGGTCCATTGGTTCGGATGGCTCGTACGAGGTGGATTGCTGGCCGGAGTTCAAGAGCCTCACTGGAGATGTCATCTCGCGCACCGCGTTCGGAAGCAGCTATCTTGAAGGAAGAAGGATCTTCGAGCTGCAGGGCGAGCTATTTGAGCGTGTCATCAAATCCATCCAGAAGATGTTCATCCCGGGTTACATGTATTTGCCTACTGAGAACAACCGGAAGATGCATCAAATGAATAAAGAGATCGAATCGATTCTGAGGGGTATGATTGGGAAAAGAATGCAAGCTATGAAAGAAGGTGAAAGCACAAAAGATGATTTACTTGGTATATTGCTTGAGTCAAACACGAGACACATGGAAGTGAATGGTCAATCAAACCAAGGCTTGACAATCAAGGATATCATGGAGGAATGCAAGCTATTCTACTTTGCAGGAGCGGATACAACATCAGTGCTTCTCACATGGACCATGCTGCTATTAAGCATGCACCCCGAGTGGCAGGATCGTGCAAGGGAAGAGATCTTAGGACTATTTGGGAAGAATAAACCAGACTATGATGGCCTGAGCCGCCTCAAAATTGTTAGTATCTTGTAG
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| Protein seq | MWAPASSPTILAAFGLVGLVLAWQAGLQLHRLWWRPRRLEKALRARGLRGSRYRFLTGDLAEEGRRRKEAWARPLPLRCHDIAPRVEPFLHGAVGVGAAHGKPRITWFGPTPEVHVADPELARVVLSNKFGHFEKVSFPELSKLIPQGLSAHEGEKWAKHRRILNPVFQLEKLKLMLPVFSACCEELISRWMGSIGSDGSYEVDCWPEFKSLTGDVISRTAFGSSYLEGRRIFELQGELFERVIKSIQKMFIPGYMYLPTENNRKMHQMNKEIESILRGMIGKRMQAMKEGESTKDDLLGILLESNTRHMEVNGQSNQGLTIKDIMEECKLFYFAGADTTSVLLTWTMLLLSMHPEWQDRAREEILGLFGKNKPDYDGLSRLKIVSIL |
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| Function | Secologanin synthase [UniProtKB/Swiss-Prot:Q05047] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0602500 | Os01t0602500-01 | Chr01 | 23682892 | 23685395 | - | irgsp1_rep | ||
| CDS seq | ATGTGGGCTCCGGCCTCATCGCCAACAATCCTCGCGGCGTTCGGTCTCGTCGGCCTCGTCCTCGCGTGGCAGGCCGGCCTCCAGCTCCACCGCCTGTGGTGGCGGCCGCGGCGGCTGGAGAAGGCGCTGCGGGCGCGGGGCCTCCGCGGCTCGCGCTACCGCTTCCTCACCGGCGACCTCGCGGAGGAGGGCCGGCGGAGGAAGGAGGCCTGGGCGAGGCCGCTGCCGCTGCGGTGCCACGACATCGCGCCGCGCGTCGAGCCGTTCCTCCACGGCGCCGTCGGCGTCGGGGCGGCGCACGGCAAGCCGCGCATCACCTGGTTCGGCCCGACGCCGGAGGTGCACGTCGCCGATCCCGAGCTGGCCAGGGTCGTCCTGTCCAACAAGTTCGGCCACTTCGAGAAGGTCAGTTTCCCGGAGCTATCGAAGCTGATCCCCCAAGGCCTGTCCGCCCACGAGGGCGAGAAGTGGGCCAAGCACAGGAGGATCCTCAACCCGGTTTTCCAGCTCGAGAAGCTCAAGCTCATGCTGCCGGTGTTTTCAGCATGCTGCGAGGAGCTGATCAGCAGGTGGATGGGGTCCATTGGTTCGGATGGCTCGTACGAGGTGGATTGCTGGCCGGAGTTCAAGAGCCTCACTGGAGATGTCATCTCGCGCACCGCGTTCGGAAGCAGCTATCTTGAAGGAAGAAGGATCTTCGAGCTGCAGGGCGAGCTATTTGAGCGTGTCATCAAATCCATCCAGAAGATGTTCATCCCGGGTTACATGTATTTGCCTACTGAGAACAACCGGAAGATGCATCAAATGAATAAAGAGATCGAATCGATTCTGAGGGGTATGATTGGGAAAAGAATGCAAGCTATGAAAGAAGGTGAAAGCACAAAAGATGATTTACTTGGTATATTGCTTGAGTCAAACACGAGACACATGGAAGTGAATGGTCAATCAAACCAAGGCTTGACAATCAAGGATATCATGGAGGAATGCAAGCTATTCTACTTTGCAGGAGCGGATACAACATCAGTGCTTCTCACATGGACCATGCTGCTATTAAGCATGCACCCCGAGTGGCAGGATCGTGCAAGGGAAGAGATCTTAGGACTATTTGGGAAGAATAAACCAGACTATGATGGCCTGAGCCGCCTCAAAATTGTTAGTATCTTGTAG
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| Protein seq | MWAPASSPTILAAFGLVGLVLAWQAGLQLHRLWWRPRRLEKALRARGLRGSRYRFLTGDLAEEGRRRKEAWARPLPLRCHDIAPRVEPFLHGAVGVGAAHGKPRITWFGPTPEVHVADPELARVVLSNKFGHFEKVSFPELSKLIPQGLSAHEGEKWAKHRRILNPVFQLEKLKLMLPVFSACCEELISRWMGSIGSDGSYEVDCWPEFKSLTGDVISRTAFGSSYLEGRRIFELQGELFERVIKSIQKMFIPGYMYLPTENNRKMHQMNKEIESILRGMIGKRMQAMKEGESTKDDLLGILLESNTRHMEVNGQSNQGLTIKDIMEECKLFYFAGADTTSVLLTWTMLLLSMHPEWQDRAREEILGLFGKNKPDYDGLSRLKIVSIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0602500 | RBH | 0.412866 | 0.000000 | 0.493971 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41820 | RBH | 0.522790 | 0.099489 | 0.138885 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0602400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026010 | SBH | 0.380584 | 1.018520 | 0.660300 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025650 | RBH | 0.089938 | 0.415210 | 0.324732 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025980 | SBH | 0.343233 | 0.0 | 1.553312 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023620 | SBH | 0.424099 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023380 | SBH | 5.186004 | 2.093777 | 1.716186 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0421000 | SBH | 0.892174 | 1.455999 | 0.3114915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023300 | RBH | 0.546497 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0385300 | SBH | 5.83854 | 4.3827855 | 1.476269 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024960 | SBH | 1.122906 | 0.108676 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023280 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023530 | RBH | 4.089728 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023530 | SBH | 1.013698 | 0.0 | 0.484182 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023450 | RBH | 0.515966 | 0.315297 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025350 | SBH | 0.087947 | 0.756523 | 0.201044 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025100 | SBH | 0.0 | 0.000000 | 0.227597 |
