Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0175400 | OGI:01014270 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:3870734-3874321 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAACAACTGATCATATTTAAATTCATTTGTTTTTCATTCTTCAATCATACAATTAACCTACTAACTGTACTGTGCACAAGCTTGGCACCATTTCAATCAAGTGTATTTTTTTAGATAATGGAATGAAATATTCAAGCAAGTGTATACCCTGTGGTCAACAACTATTCTCTATTTACATGTACTATTCACATATATGGCTGACACTAGGGGTCTCATACTTGCCAAACCTACTGCCTGCATTGTGCTAAGTATTGCATGAGAAAGAATTGCTGGTTCCTTAGTAATATACTTTGATAAGGATTCTGTTTTTCTTTTTTAGGAAAATGATGAAGAAGAAAGCACTGACTATGGCTTCATTCAGACAAAGGGCAAAAAGAAGCGTTCTACCTGATAACTTCTCCAATCAAGACAGCCTACTTTTGCTATCTATAGTCCAAGATGGACACTTTTGTTATCCTCTCATCTACTAGCCAAATTACTTTTGGTGTATCTAGCTCTGACTAAGAACCTAGACTGATCTACTAGCCAGTTACTCTAATACAAAGTTGACATGGAGCTTTATTAAAATCTTTCATTATTTAAGCTCTAGATCAACATCTAGAGGATGATGACGATGACGATGGGTTGCTTGGTTCCGGCAAACGATTACGAGGACGTCGGCCGGGTTCTCGAGAATCCTGTCGTCGTCTCCCGTTGTTGAAGATAATATGTCAATACTCTTCAAATGTCTGTCACAAATAGCCACTGTGTTTTGTTCAGATTATACAGTCTATATCACACTATATGTCACAAAAATCTTTTAAATTTTGTAGTCTACTACAGCAATCATGATTGTGCACTGTAGTATCATGCTATAACTTGCGCTTTTTTTTTTAGATAATACTTGCATTGTTGTTAAACTGATTATTCTGTCTCATTAGGGTCAAATAGCATGGCCCATCCAGTATTGCACGCGGCTTTGCCGCGTGTTTTTTTCTAGTGATGATCCTAAAGCATTTCAATCATTAAAGAGATGAGTAGATAAAAGAGCAGGATAATAGCTTATATAAGTGCCATGAATTGAACACCTAAACTCCCATGCTCTTTCCCAAAAAAACATCAGCCAACCTTATTTAGAGCATGCCAAATGGCAATTTTAGGACTTAGGAGTATTACTCAAAGGTCAGCGGTATAATAATAATCACAATGCAGGTGGAAGATGCTATGTACGCGGTGTGGCCGCGTCGATCAGGGGCCTCAGTAGCGTGTGCTACGCGTGGTATCCTAACTCTCATCACAATAATTCATTTCATAACCAAAAAAAAGAAAAGAAATAATCCTTTTTAAGACCTGGAAATCCATATGATCTAAGATCCTCTATAAAATGTCAAAGTAAAAACCAAAAGGATAGATTATGCACTGCAATATCTGAGAATGGGTCAATCCAAGCAAACAGAACAGTCCCATGCAAACACGCATCAGTGCAGTGGCGGAGACAGCGTGGGGGCTGGGGGGTCTATAGACCCCCTACCCCCTAATAGATCATTAGAGCCCCCATTAAGACCCCCCCTAAAATTTAAATCCATATATCTATTAAAGGGGGCTAAAATAGACTTTATCTGAGATTGTTAGAAGGCCCAAAAGTCTGAGGAGCCCCCACTATAATTTTATCCTGGCTCCGCCACTGCATCAGTGTACATCAGCTAATAAGCTAACTATCTAAGTGGAAAGCAAAACAAATATCTATCTATCCAAACTAGCAGTGAGAAAAAGGAAGAGGAAATAAGAAATAGTGGCAACTACATACATCTGCCTTGTGATCCAACAAAATCTTCAGTGTCTTATCCTTGCCATTGTTAGCAGCATGAAAGAGTGGTGTTCCAAGGCCACAGTCTATGTCAACAGGTATCCCTTTTGAAAGCAAGAACTCTGTTACCTTACAGCATCCTGCAGTGAATGAGATGGGCCATAAATCATGGGGAAACAAATACTATATAAATTGAGTTATTTGAATAAACAGTTAGTACCAGTATAATGGACAAATCACAATAGATTACATGTGAGATGTGACCGAGTATAAACAGAGCAAACCTATACAACTTTGAGTGGTGATATATAAACTAAAAGTATCTAGATTAGCAACACAATAAAAGATAACTGTGACGACATGGTTGAATTAAATGTAATCTATTAATAGTAATGCAGTATCGTAGAATCTTGTACAACAATATAATTGGTAATATAACAAGGAATTGGATAGTGTTCATATCAAGGGAGACCTGTGCCAGCAGCATGGTGGAGAACTGTGCATCCTCTAACATCTGCTTTTGTTACATCACCACCATGATCAAGAAAATACTGCACCGTAGGAACATCACCAGACTCAGCAGCGGCCATAAACGGTGTTATATCTGTAATAAACAGCACATCAGTACACTTGGCACATTATACTGCCAAAACATAGACATGGCAGCCGCCAATTTCATGAAAGGATGGTAGAGTTAGATAATAACCTTCTTTTCCAGCAATATTCACGTCACCCCCCAATTCCTCCACCAAGAACTTGCAAACATTCAGATGGCCCTGGCATGCCACGGCGTGCAGCATCCCAATCCCATGCTTGTTAAGAGCTAAGACTGCATACTGGGTCTTTCCTTTCTCGATCCCAAGGCTCTTTAAAATACCTTCTCGCAAATAAGAACAAAAAGAAGTCATCACAGTGAGGAAGATAATCTGCGAATGAACAGATTAACTAGGTAGAACTCGAAAAAGCGACGAATACGTGCAACGTGCAAGAACCTCACTGAGTCATGTGAACCTATACTTCATACTTGCGACTTGAAAAACATTTTTGTAGAGTACTACCTGCTACTCATCACACATTAGCACTTGGAGAGGTAACTGTAATAGAAAGATGATCACAACGTTGTCGCATTTATCCAACGCAAGGACTTGCTACGATAAAAGCCTCAGATCTTGCAATTTCTAGATAAGATGGCATGCATCTCCAGTAATCCATAGACCTGGCTGTTAATTCCTTCACGCAGGGTCAAAAATCCATGCAACATATAAACATTACCGAAAATAAATTGTGGGAAATTCCCAAAGGCAACGAGTGCTAGATACAGAATTTGCATTCCAAAATTCCATGGCCAAATCAATTAACAGTACAGCCATCGCCAAGCGCTCCACACAAGGACACACATGCATCACCCAAACCTAAGGGAGGAAAAGCACGCAACACAGGCGCATGCAAAGGGGGGGCAATGCATACACGCATCGATCGGGGGGGATCGACGCGGCGGAGAAGAAGGAGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGCAAACCTACCTTTGAGGCGTCCGAGGTTCCCGTCGAAGGCCGCCCTCAGGAGAGCGCTCTCACCTGCGAACAAACCGAGAAATCGCCATTAGACCACATGGCCGAGGAGCTAGCAAGCCGATCGAGCTAGGAGGAGATGCGGAGAGGTGGGGGGAGGCTGGACGAACTGGTGCCGTCGTCGGTGGGGCGGCAGTAGACGAACGGCGCCGCCATGGCCGCGAGGAGGGAGGAAGCTTGCAGGAGGAGGAGGACGAGGAGCGGAGT
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| CDS seq | ATGGCGGCGCCGTTCGTCTACTGCCGCCCCACCGACGACGGCACCAGTGAGAGCGCTCTCCTGAGGGCGGCCTTCGACGGGAACCTCGGACGCCTCAAAGGTATTTTAAAGAGCCTTGGGATCGAGAAAGGAAAGACCCAGTATGCAGTCTTAGCTCTTAACAAGCATGGGATTGGGATGCTGCACGCCGTGGCATGCCAGGGCCATCTGAATGTTTGCAAGTTCTTGGTGGAGGAATTGGGGGGTGACGTGAATATTGCTGGAAAAGAAGATATAACACCGTTTATGGCCGCTGCTGAGTCTGGTGATGTTCCTACGGTGCAGTATTTTCTTGATCATGGTGGTGATGTAACAAAAGCAGATGTTAGAGGATGCACAGTTCTCCACCATGCTGCTGGCACAGGATGCTGTAAGGTAACAGAGTTCTTGCTTTCAAAAGGGATACCTGTTGACATAGACTGTGGCCTTGGAACACCACTCTTTCATGCTGCTAACAATGGCAAGGATAAGACACTGAAGATTTTGTTGGATCACAAGGCAGATTGGCTATTTGTGACAGACATTTGA
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| Protein seq | MAAPFVYCRPTDDGTSESALLRAAFDGNLGRLKGILKSLGIEKGKTQYAVLALNKHGIGMLHAVACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVQYFLDHGGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKILLDHKADWLFVTDI |
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| Function | Espin [UniProtKB/Swiss-Prot:Q63618] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0175400 | Os01t0175400-01 | Chr01 | 3870734 | 3874321 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGCGCCGTTCGTCTACTGCCGCCCCACCGACGACGGCACCAGTGAGAGCGCTCTCCTGAGGGCGGCCTTCGACGGGAACCTCGGACGCCTCAAAGGTATTTTAAAGAGCCTTGGGATCGAGAAAGGAAAGACCCAGTATGCAGTCTTAGCTCTTAACAAGCATGGGATTGGGATGCTGCACGCCGTGGCATGCCAGGGCCATCTGAATGTTTGCAAGTTCTTGGTGGAGGAATTGGGGGGTGACGTGAATATTGCTGGAAAAGAAGATATAACACCGTTTATGGCCGCTGCTGAGTCTGGTGATGTTCCTACGGTGCAGTATTTTCTTGATCATGGTGGTGATGTAACAAAAGCAGATGTTAGAGGATGCACAGTTCTCCACCATGCTGCTGGCACAGGATGCTGTAAGGTAACAGAGTTCTTGCTTTCAAAAGGGATACCTGTTGACATAGACTGTGGCCTTGGAACACCACTCTTTCATGCTGCTAACAATGGCAAGGATAAGACACTGAAGATTTTGTTGGATCACAAGGCAGATTGGCTATTTGTGACAGACATTTGA
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| Protein seq | MAAPFVYCRPTDDGTSESALLRAAFDGNLGRLKGILKSLGIEKGKTQYAVLALNKHGIGMLHAVACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVQYFLDHGGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKILLDHKADWLFVTDI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0175400 | RBH | 0.0 | 0.000000 | 1.467392 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08000 | RBH | 0.0 | 0.000000 | 0.498499 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0188900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006680 | SBH | 0.313759 | 0.0 | 4.483479 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005220 | RBH | 0.0 | 0.0 | 2.209015 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006630 | SBH | 0.433991 | 0.0 | 9.708139 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005120 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006340 | SBH | 4.914152 | 0.758275 | 11.617171 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0069000 | RBH | 1.808431 | 6.8238785 | 4.116335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006290 | SBH | 1.312307 | 0.000000 | 3.131359 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0069500 | SBH | 2.926017 | 10.1367605 | 24.332473 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005090 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005280 | RBH | 0.0 | 1.926212 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006350 | RBH | 14.306790 | 30.515209 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006300 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006260 | SBH | 0.933646 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005310 | RBH | 0.207828 | 0.0 | 0.628901 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005190 | RBH | 0.0 | 0.0 | 0.841257 |
