Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os01g0117266 OGI:01002250 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr01:976766-977218
Gene Symbol RLCK17, OsRLCK17
DNA seq

ATGAGAGGATTTGTTGGCGCAGCCGTCCTCCTTGTATGCAACCTGGCCACAGCGTCAGCGTGGAAGGATAAAGATTTCTTCAGCGCATGCCCAGCAAAGCAGTGTGGCAAGGTTGAGATCAGGTACCCTTTCCGATTTGAACCCAGCAATACATCGTCCTCCTGCGGCTTACCATGCATGAAGCTAACATGCTCTGACCGCCAAGAAACTATCCTAGATATCAAAAATTACCTTGGAAGGCCATACAAGGTGACCGCCATAGATTACAAGCGTGCTACCCTCACCATCGTCCCGCTCGCGGACGATTCTTCCTTGCCTCCCACTCCCGGATGCCCGCTTCCCAACCTCATCTCCGAAGGAGCACTTGATCACCGTTGTGAACCATACGCAATGTGGTATGCAGCACTAGTGAAGCTGTTCGTCAGAGTTCGCAGCACCAGCTACTATCCCTGA

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CDS seq

ATGAGAGGATTTGTTGGCGCAGCCGTCCTCCTTGTATGCAACCTGGCCACAGCGTCAGCGTGGAAGGATAAAGATTTCTTCAGCGCATGCCCAGCAAAGCAGTGTGGCAAGGTTGAGATCAGGTACCCTTTCCGATTTGAACCCAGCAATACATCGTCCTCCTGCGGCTTACCATGCATGAAGCTAACATGCTCTGACCGCCAAGAAACTATCCTAGATATCAAAAATTACCTTGGAAGGCCATACAAGGTGACCGCCATAGATTACAAGCGTGCTACCCTCACCATCGTCCCGCTCGCGGACGATTCTTCCTTGCCTCCCACTCCCGGATGCCCGCTTCCCAACCTCATCTCCGAAGGAGCACTTGATCACCGTTGTGAACCATACGCAATGTGGTATGCAGCACTAGTGAAGCTGTTCGTCAGAGTTCGCAGCACCAGCTACTATCCCTGA

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Protein seq

MRGFVGAAVLLVCNLATASAWKDKDFFSACPAKQCGKVEIRYPFRFEPSNTSSSCGLPCMKLTCSDRQETILDIKNYLGRPYKVTAIDYKRATLTIVPLADDSSLPPTPGCPLPNLISEGALDHRCEPYAMWYAALVKLFVRVRSTSYYP

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os01g0117266 Os01t0117266-00 Chr01 976766 977218 + irgsp1_rep
CDS seq

ATGAGAGGATTTGTTGGCGCAGCCGTCCTCCTTGTATGCAACCTGGCCACAGCGTCAGCGTGGAAGGATAAAGATTTCTTCAGCGCATGCCCAGCAAAGCAGTGTGGCAAGGTTGAGATCAGGTACCCTTTCCGATTTGAACCCAGCAATACATCGTCCTCCTGCGGCTTACCATGCATGAAGCTAACATGCTCTGACCGCCAAGAAACTATCCTAGATATCAAAAATTACCTTGGAAGGCCATACAAGGTGACCGCCATAGATTACAAGCGTGCTACCCTCACCATCGTCCCGCTCGCGGACGATTCTTCCTTGCCTCCCACTCCCGGATGCCCGCTTCCCAACCTCATCTCCGAAGGAGCACTTGATCACCGTTGTGAACCATACGCAATGTGGTATGCAGCACTAGTGAAGCTGTTCGTCAGAGTTCGCAGCACCAGCTACTATCCCTGA

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Protein seq

MRGFVGAAVLLVCNLATASAWKDKDFFSACPAKQCGKVEIRYPFRFEPSNTSSSCGLPCMKLTCSDRQETILDIKNYLGRPYKVTAIDYKRATLTIVPLADDSSLPPTPGCPLPNLISEGALDHRCEPYAMWYAALVKLFVRVRSTSYYP

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0117266 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g02790 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os01g0116300 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0001320 RBH 0.432998 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0001230 SBH 0.075972 0.0 0.600303
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0001310 SBH 0.303854 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0001220 RBH 0.000000 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0001300 SBH 1.385442 0.0 1.218488
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0016300 SBH 1.7608025 0.1278215 0.037441
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0001280 SBH 0.0 0.0 0.067795
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0015900 SBH 3.8578395 0.36971 0.170273
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0001010 SBH 0.0 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0001380 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0001300 RBH 1.004579 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0001350 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0001290 SBH 0.065702 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G001380 RBH 0.503533 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0001330 SBH 0.000000 5.982288 3.209727
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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