Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
Os01g0117266 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:976766-977218 | ||||||||
Gene Symbol | RLCK17, OsRLCK17 | ||||||||||
DNA seq | ATGAGAGGATTTGTTGGCGCAGCCGTCCTCCTTGTATGCAACCTGGCCACAGCGTCAGCGTGGAAGGATAAAGATTTCTTCAGCGCATGCCCAGCAAAGCAGTGTGGCAAGGTTGAGATCAGGTACCCTTTCCGATTTGAACCCAGCAATACATCGTCCTCCTGCGGCTTACCATGCATGAAGCTAACATGCTCTGACCGCCAAGAAACTATCCTAGATATCAAAAATTACCTTGGAAGGCCATACAAGGTGACCGCCATAGATTACAAGCGTGCTACCCTCACCATCGTCCCGCTCGCGGACGATTCTTCCTTGCCTCCCACTCCCGGATGCCCGCTTCCCAACCTCATCTCCGAAGGAGCACTTGATCACCGTTGTGAACCATACGCAATGTGGTATGCAGCACTAGTGAAGCTGTTCGTCAGAGTTCGCAGCACCAGCTACTATCCCTGA
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CDS seq | ATGAGAGGATTTGTTGGCGCAGCCGTCCTCCTTGTATGCAACCTGGCCACAGCGTCAGCGTGGAAGGATAAAGATTTCTTCAGCGCATGCCCAGCAAAGCAGTGTGGCAAGGTTGAGATCAGGTACCCTTTCCGATTTGAACCCAGCAATACATCGTCCTCCTGCGGCTTACCATGCATGAAGCTAACATGCTCTGACCGCCAAGAAACTATCCTAGATATCAAAAATTACCTTGGAAGGCCATACAAGGTGACCGCCATAGATTACAAGCGTGCTACCCTCACCATCGTCCCGCTCGCGGACGATTCTTCCTTGCCTCCCACTCCCGGATGCCCGCTTCCCAACCTCATCTCCGAAGGAGCACTTGATCACCGTTGTGAACCATACGCAATGTGGTATGCAGCACTAGTGAAGCTGTTCGTCAGAGTTCGCAGCACCAGCTACTATCCCTGA
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Protein seq | MRGFVGAAVLLVCNLATASAWKDKDFFSACPAKQCGKVEIRYPFRFEPSNTSSSCGLPCMKLTCSDRQETILDIKNYLGRPYKVTAIDYKRATLTIVPLADDSSLPPTPGCPLPNLISEGALDHRCEPYAMWYAALVKLFVRVRSTSYYP |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
Os01g0117266 | Os01t0117266-00 | Chr01 | 976766 | 977218 | + | irgsp1_rep | ||
CDS seq | ATGAGAGGATTTGTTGGCGCAGCCGTCCTCCTTGTATGCAACCTGGCCACAGCGTCAGCGTGGAAGGATAAAGATTTCTTCAGCGCATGCCCAGCAAAGCAGTGTGGCAAGGTTGAGATCAGGTACCCTTTCCGATTTGAACCCAGCAATACATCGTCCTCCTGCGGCTTACCATGCATGAAGCTAACATGCTCTGACCGCCAAGAAACTATCCTAGATATCAAAAATTACCTTGGAAGGCCATACAAGGTGACCGCCATAGATTACAAGCGTGCTACCCTCACCATCGTCCCGCTCGCGGACGATTCTTCCTTGCCTCCCACTCCCGGATGCCCGCTTCCCAACCTCATCTCCGAAGGAGCACTTGATCACCGTTGTGAACCATACGCAATGTGGTATGCAGCACTAGTGAAGCTGTTCGTCAGAGTTCGCAGCACCAGCTACTATCCCTGA
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Protein seq | MRGFVGAAVLLVCNLATASAWKDKDFFSACPAKQCGKVEIRYPFRFEPSNTSSSCGLPCMKLTCSDRQETILDIKNYLGRPYKVTAIDYKRATLTIVPLADDSSLPPTPGCPLPNLISEGALDHRCEPYAMWYAALVKLFVRVRSTSYYP |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0117266 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02790 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0116300 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001320 | RBH | 0.432998 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001230 | SBH | 0.075972 | 0.0 | 0.600303 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001310 | SBH | 0.303854 | 0.000000 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001220 | RBH | 0.000000 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001300 | SBH | 1.385442 | 0.0 | 1.218488 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0016300 | SBH | 1.7608025 | 0.1278215 | 0.037441 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001280 | SBH | 0.0 | 0.0 | 0.067795 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015900 | SBH | 3.8578395 | 0.36971 | 0.170273 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001010 | SBH | 0.0 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001380 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001300 | RBH | 1.004579 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001350 | SBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001290 | SBH | 0.065702 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001380 | RBH | 0.503533 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001330 | SBH | 0.000000 | 5.982288 | 3.209727 |