Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0016300 | OGI:01002250 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:925804-926528 | ||||||||
| Gene Symbol | RLCK17, OsRLCK17 | ||||||||||
| DNA seq | ATGGCTAAACTTCTTGTTGTTGTGCTGCTACTATCTCTTCTCATCTATGCGGCCACAGCATGGGATGCCGAGAGCTTCTTCAACTTCAAGAGTTGTCCACCAAATCAGTGCAGCAAACATGGACCAAAAGTCCGGTTCCCACTCCGCCTTGCATCACAATCTCCGTCGTGCGGCACACCTCTCATGGAGTTATCATGTTCTGGACAGGACACCATCCTGTATCACCCAGTTCTAGGCTCCTGCAAGGTGACTGCAATATCTTACAAGCATGCTGCCATGTCCATCATCCTGCTTGTAGATTCCACACCTCACTGCCCACTTCAGAAGCTCATCTCGACAAATTTATCAACTGATGTGTACAAACCTCAAAAATTGGAAGCTGCAAGCTTAGTAAGTTGTTCAAGAGATTTACCAAGAGATCAGCACGGTGTAGTTGGCCCAATAACTTGCCTCAGTAACAACGCAAGCCAGTGGTATTTGATACATCCTTATGCATATTGTCTGTTCTTCAGCCAGACTGCAAAGTTGTTAGTAATGGCATCCAGGCACCCTCAACTTTTAAGGAAACAGAAAATGGAGTAATCGGTGTTGATGAGTTGGTATTCACTTGGTACTCCAGTGACATAACCAGAGATTGTCAAAAATGTGAAAATGAAGGCAAACACTGTGGTTTCAGCTCACAAAGGGGCCGAGCATTCTGCTATTATGGTATTTTCTCTTTCTGA
More
|
||||||||||
| CDS seq | ATGGCTAAACTTCTTGTTGTTGTGCTGCTACTATCTCTTCTCATCTATGCGGCCACAGCATGGGATGCCGAGAGCTTCTTCAACTTCAAGAGTTGTCCACCAAATCAGTGCAGCAAACATGGACCAAAAGTCCGGTTCCCACTCCGCCTTGCATCACAATCTCCGTCGTGCGGCACACCTCTCATGGAGTTATCATGTTCTGGACAGGACACCATCCTGTATCACCCAGTTCTAGGCTCCTGCAAGGTGACTGCAATATCTTACAAGCATGCTGCCATGTCCATCATCCTGCTTGTAGATTCCACACCTCACTGCCCACTTCAGAAGCTCATCTCGACAAATTTATCAACTGATGTGTACAAACCTCAAAAATTGGAAGCTGCAAGCTTACCAGACTGCAAAGTTGTTAGTAATGGCATCCAGGCACCCTCAACTTTTAAGGAAACAGAAAATGGAGTAATCGGTGTTGATGAGTTGGTATTCACTTGGTACTCCAGTGACATAACCAGAGATTGTCAAAAATGTGAAAATGAAGGCAAACACTGTGGTTTCAGCTCACAAAGGGGCCGAGCATTCTGCTATTATGGTATTTTCTCTTTCTGA
More
|
||||||||||
| Protein seq | MAKLLVVVLLLSLLIYAATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPSCGTPLMELSCSGQDTILYHPVLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVYKPQKLEAASLPDCKVVSNGIQAPSTFKETENGVIGVDELVFTWYSSDITRDCQKCENEGKHCGFSSQRGRAFCYYGIFSF |
||||||||||
| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0016300 | OsMH63_01T0016300.1 | Chr01 | 925804 | 926528 | + | maker | ||
| CDS seq | ATGGCTAAACTTCTTGTTGTTGTGCTGCTACTATCTCTTCTCATCTATGCGGCCACAGCATGGGATGCCGAGAGCTTCTTCAACTTCAAGAGTTGTCCACCAAATCAGTGCAGCAAACATGGACCAAAAGTCCGGTTCCCACTCCGCCTTGCATCACAATCTCCGTCGTGCGGCACACCTCTCATGGAGTTATCATGTTCTGGACAGGACACCATCCTGTATCACCCAGTTCTAGGCTCCTGCAAGGTGACTGCAATATCTTACAAGCATGCTGCCATGTCCATCATCCTGCTTGTAGATTCCACACCTCACTGCCCACTTCAGAAGCTCATCTCGACAAATTTATCAACTGATGTGTACAAACCTCAAAAATTGGAAGCTGCAAGCTTACCAGACTGCAAAGTTGTTAGTAATGGCATCCAGGCACCCTCAACTTTTAAGGAAACAGAAAATGGAGTAATCGGTGTTGATGAGTTGGTATTCACTTGGTACTCCAGTGACATAACCAGAGATTGTCAAAAATGTGAAAATGAAGGCAAACACTGTGGTTTCAGCTCACAAAGGGGCCGAGCATTCTGCTATTATGGTATTTTCTCTTTCTGA
More
|
|||||||
| Protein seq | MAKLLVVVLLLSLLIYAATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPSCGTPLMELSCSGQDTILYHPVLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVYKPQKLEAASLPDCKVVSNGIQAPSTFKETENGVIGVDELVFTWYSSDITRDCQKCENEGKHCGFSSQRGRAFCYYGIFSF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.7608025 | 0.1278215 | 0.037441 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0116900 | SBH | 5.878582 | 5.732625 | 3.534452 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02710 | RBH | 2.755430 | 4.150273 | 1.149388 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0116900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001270 | SBH | 2.699589 | 1.366679 | 3.534931 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001200 | SBH | 0.280931 | 0.882898 | 0.439823 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001250 | RBH | 10.201883 | 0.0 | 2.732177 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001140 | RBH | 2.537609 | 0.074360 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001250 | RBH | 12.260585 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001170 | RBH | 2.912498 | 0.0 | 2.308542 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015900 | RBH | 3.8578395 | 0.36971 | 0.170273 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001140 | RBH | 2.255941 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001290 | RBH | 4.309310 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001200 | RBH | 50.461376 | 11.250546 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001260 | RBH | 2.544434 | 0.557369 | 1.331161 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001190 | RBH | 2.171269 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001290 | RBH | 3.659225 | 0.0 | 0.478276 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001220 | RBH | 3.649381 | 0.000000 | 1.464393 |
