Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsCMeo_01g0001310		OGI:01002250 \| 16/16			CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)			Chr01:982679-986689		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK17, OsRLCK17
DNA seq		GATCCAATAAAGTAGGAGAGCCAAGCTCCCCCATTTCCATTAAGAGAAATGAGCATTTGCCAGATGTTTGAGGGTTTCTACAAATAAACCCTTTCCCAGACAGATAACAGGTCCAGCTAAGCTAACCAAGCAAACCCTCAAAAGATCTACCTATAGGTCTTTTTCCACACGGCAGGATGGATGCTGCTGCGATTCACTAGACTGCAGGCAGCTTCCGGCCGGGTACTACACTGTGGTATAGTGGTGTCCATCTTTTAACTCGACGCAACGCAACATTGCCCTGCCTTGCTTACTTGTTGGATCGTCTCCATCTCGCCTGCCTGTCACAGTGCATACAGAAAATAGGATGAGAGGATTTCTTGCAGCAACCCTCCTGGTGTTGAGCCTTCTTCTCAACCTGCACACAGCAGCGTCAGTGTCAGCGTGGGAAGACAAGGATTTCTTCAGCTACTGCCCGCCGTCGAGGTGCGGCGAGCATGGCCCCGAGATCAGGTTCCCTTTCAAACTTGAATCCAAAAATACACCATCGTCATGTGGCGTGCCATGCATGAAGCTATCATGCTCTGGCCAATATACCATCCTACATAACAAATACCTTGGAAGGCCATACAAGTTGACCGCCATAGATTACAAGCATGCTCTCCTGACCGCCGTCCCGCTCGCAGACGAAGACAACTACTCCTCACCGTCTCCCTGCCCACTTCTAAAATCCATATCTATCAGGCCAAACTTAATAACAGGGCCAGGCTATGGTTATTACAACACAGGGTACCAGAACCCTTGCCAAACATACGATACCTACTATGCAGCACTAGTAAGCTGTTCAACAGAATTTGCCCTAGCTAGTGTCCCTGGCACTGCCACCGATAACGATTATATTGCTGGCCCCATCTCTTGCCTTAGCAACCAAACCCACTTCTCCTATTTGGTGGCTTATCGTGTAACTATGTCTCTTCTTCCGTTGGACTGCGAGGTCATCTCAGATGGCCCCATTCCGATACCAGCTTTTTATTACTCCGGTTATATCCCATCCATGTTCACAACAAGTGCAGACAGAATCCTCGACTATCCTTCCGGTTATGTCTTATCCACGTTCAGAGAAAGTGCAGAAAGAATCCTCAATTCTTCTGAGACCATGATCTGGTGGTATTTCTACAAGTACGATGGCAGACATTGTGAACAACAAGGCCGACGCTGCGCATTCAGCTCACAAAGGAATCAAACATTCTGCATGGGTAGAGGTATTATTTCTTACTGGCCAAACAACTACTCCTATACAACTCGCAGTACCATTCTTGTTTATCATCTGTAAGTTTTACAATTTCCAATTTACAGCCCCACACATATCCATGCTAGTGCTATTTGATCGTCAAAATCCAGCAAAACACTGGCAATTATGCCCGATGGATAAGAAAACAATATTTATCAGCACATGAGCATCACTTATATTATCTTTATTTAAGACCCACTTATATTATCTGATCATCTTAAAAACTGAAAGCAGGAAATGACCATAACCTTGATATGCCAGCACATTCATGCATGGTTGCACTTGAATAAAGTTACCAAAGAAGCAGAACTTATTTGGTCACAACTGTAGCATTCCGATTGCCTGTAGCAGAAGTTCAAGGGATACAGGTAGCTCAGATGGGATGAGACTTGAGGGTATACAAGTAATACCTCCGTTTTCAATATATGACATGGATGACTCTTGAACATACTTTTAATATACTTAAAAATGGAGGGAGTAGGTATTTTGGTCTATTGTGTGATACAACGAGAGCTGCAGTAAGATGATGCTTGGTTGCTTTGATGGCTGTTGAGGTTAACATAGATCTGAGATGTGGTGTGTAGATAATTTTGTAACCCTTTTTCCACGTTATCCCACCCTAACCATTCTTAATCTGCCATTCCGTCTTGCTTAGCCACCATCATTAGCACATGGCAACTTGCTTATTAGTATGAGTTATGATATCTGCTGAACAAAACGTAGGGATCATTTCTCACTTACAAATATATTCATATATAGGCCTTGTTTAGTTCTAAATTTTTTTCTTCAAACTTCCAACTTTTCCATCACATCAAAACTTTCCTACACACATAAACTTCCAACTTTTTTCTTCAAACTTCCAATTTTAGTCAAATTTCCAATTTTGGTGTGGAACTAAACACAGCCATAATTGAATAATTCAAACACATCTGATTCCACAGAATCTAAAACTTACACGCACTCCACTGGGTGTCTGGTCTTCCATACTGCACTATAGCAGTCAGCTGTATACCCATGTCAGATTTTACCTTTTCTTTCTCAAGTCAATTTCTCCTCTCTTTTTTTCCTAACGAAACTATCGATCAAGTCTGAATTCTCTTGTTTGGTTTTTGCAGGTTCACATGTCAAAGTAATAGCAGGTATTGGTTCAATAATCCAAACCTTCTTTTGTTCAATGAAAGTAAAATAAAAGGAACAAATTAAAGTTATCTATCACATACTAAGTCTTATTATTAGCTCCTCTGGTCTTATAATCTCTTATCATTATTACAATCCTAATGGTGGCTCTCTAATTTATATTCGTAATCAATGTGTTGATAGTCTATTTGCTCTTCTGTTTGTACGGAAAGATGGTTTTGCCAGCATATTCCTCTACATTGCTTTTCTGAGCTAAGTCTTATAAATATAAGTTGGGCTGTGAGCCTTCTGTCTAGAAACAACACAATGCACTAACTTTTATTATCTGCATCATCAGCTACATCTTCGGTTGCTGCATTTGTTATTCTTCTGTTGATGGTGGCCACTGCACTATATCTTTCACTGAGGACAAGATATAATGAAGAGATACATCTGAAGGTAGAAATGTTTCTCAAAACATATGGCACATCGAAACCCACGAGGTACACTTTCTCCGAAGTAAAGAAGATAGCAAGCCGGTTCAAGGTTAAAGTAGGACAAGGTGGATTTGGAAGTGTGTACAGAGGTGAGCTACCAAACGGAGTCCCTGTGGTGGTTAAGATGCTAGAAAACTCCAAAGGGGAGGGAGATGAATTCATCAATGAGGTTGCAACTATCGGGAGAATCCACCATGCAAACATTGTCCGCCTCCTTGGCTTTTGCTTAGAAGGAACAAGGCGGGCTCTCATTTACGAATACATGCCTAACGATTCGCTGGAGAAATATATATTTTCACATGATTCTGATACTTCTCAAGAAGTCCTAGTGCCAAACAAGATGCTAGATATTGCTTTAGGCATTGCCCGAGGAATGGAGTACTTGCATCAAGGATGCAACCAGCGTATCCTCCACTTTGATATCAAGCCTCATAACATCTTGCTGGACTATAACTTCAGTCCGAAGATTTCAGACTTTGGCCTTGCAAAGCTGTGTGCAAGGGACCAAAGCATCGTTACCTTGACTGCAGCAAGAGGCACGATGGGCTATATTGCACCAGAGCTATATTCTCGGAACTTTGGAGAGATATCTTACAAGTCAGATGTTTATAGTTTCGGCATGCTGGTGTTAGAAATGGTTAGCGGAAGGAGGAACTCAGACCCAAGTGTTGAAAGCCAAAACATGGTCTACTTCCCAGAATGGATCTATGAACAGGTTACCGCTGGGCAGGATTTGGCACTTGGTAGGGAAATGACTGAAGAAGAGAAAGCAACAACGAGACAGCTGGCCATTGTGGCACTATGGTGCATTCAGTGGAACCCAAATAACCGGCCATCAATGACAAAGGTGGTGAACATGCTAACAGGGAGGTTGCAGAATCTACAGGTGCCGCCTAAGCAGTTTTTCTCAGCTGACAGCCATCCTACTCTGTAAGACTTGCACAACATGGTACCATAATTCAGTAGAGGAATATGTGATACATATAAACTTAGTACACATTTTGCAATAAATGCCTAGCATTAGCATGCAATATATTCTTATTATGCCAAGCCACATGAAGTGCCACTCTTCACTGTATAAAAATTCAATGAGGGAATTGGATATTTGTGGTTCAGTTGTCGTGGGTT More
CDS seq		ATGAGAGGATTTCTTGCAGCAACCCTCCTGGTGTTGAGCCTTCTTCTCAACCTGCACACAGCAGCGTCAGTGTCAGCGTGGGAAGACAAGGATTTCTTCAGCTACTGCCCGCCGTCGAGGTGCGGCGAGCATGGCCCCGAGATCAGGTTCCCTTTCAAACTTGAATCCAAAAATACACCATCGTCATGTGGCGTGCCATGCATGAAGCTATCATGCTCTGGCCAATATACCATCCTACATAACAAATACCTTGGAAGGCCATACAAGTTGACCGCCATAGATTACAAGCATGCTCTCCTGACCGCCGTCCCGCTCGCAGACGAAGACAACTACTCCTCACCGTCTCCCTGCCCACTTCTAAAATCCATATCTATCAGGCCAAACTTAATAACAGGGCCAGGCTATGGTTATTACAACACAGGGTACCAGAACCCTTGCCAAACATACGATACCTACTATGCAGCACTAGTAAGCTGTTCAACAGAATTTGCCCTAGCTAGTGTCCCTGGCACTGCCACCGATAACGATTATATTGCTGGCCCCATCTCTTGCCTTAGCAACCAAACCCACTTCTCCTATTTGGTGGCTTATCGTGTAACTATGTCTCTTCTTCCGTTGGACTGCGAGGTCATCTCAGATGGCCCCATTCCGATACCAGCTTTTTATTACTCCGGTTATATCCCATCCATGTTCACAACAAGTGCAGACAGAATCCTCGACTATCCTTCCGGTTATGTCTTATCCACGTTCAGAGAAAGTGCAGAAAGAATCCTCAATTCTTCTGAGACCATGATCTGGTGGTATTTCTACAAGTACGATGGCAGACATTGTGAACAACAAGGCCGACGCTGCGCATTCAGCTCACAAAGGAATCAAACATTCTGCATGGGTAGAGGTTCACATGTCAAAGTAATAGCAGCTACATCTTCGGTTGCTGCATTTGTTATTCTTCTGTTGATGGTGGCCACTGCACTATATCTTTCACTGAGGACAAGATATAATGAAGAGATACATCTGAAGGTAGAAATGTTTCTCAAAACATATGGCACATCGAAACCCACGAGGTACACTTTCTCCGAAGTAAAGAAGATAGCAAGCCGGTTCAAGGTTAAAGTAGGACAAGGTGGATTTGGAAGTGTGTACAGAGGTGAGCTACCAAACGGAGTCCCTGTGGTGGTTAAGATGCTAGAAAACTCCAAAGGGGAGGGAGATGAATTCATCAATGAGGTTGCAACTATCGGGAGAATCCACCATGCAAACATTGTCCGCCTCCTTGGCTTTTGCTTAGAAGGAACAAGGCGGGCTCTCATTTACGAATACATGCCTAACGATTCGCTGGAGAAATATATATTTTCACATGATTCTGATACTTCTCAAGAAGTCCTAGTGCCAAACAAGATGCTAGATATTGCTTTAGGCATTGCCCGAGGAATGGAGTACTTGCATCAAGGATGCAACCAGCGTATCCTCCACTTTGATATCAAGCCTCATAACATCTTGCTGGACTATAACTTCAGTCCGAAGATTTCAGACTTTGGCCTTGCAAAGCTGTGTGCAAGGGACCAAAGCATCGTTACCTTGACTGCAGCAAGAGGCACGATGGGCTATATTGCACCAGAGCTATATTCTCGGAACTTTGGAGAGATATCTTACAAGTCAGATGTTTATAGTTTCGGCATGCTGGTGTTAGAAATGGTTAGCGGAAGGAGGAACTCAGACCCAAGTGTTGAAAGCCAAAACATGGTCTACTTCCCAGAATGGATCTATGAACAGGTTACCGCTGGGCAGGATTTGGCACTTGGTAGGGAAATGACTGAAGAAGAGAAAGCAACAACGAGACAGCTGGCCATTGTGGCACTATGGTGCATTCAGTGGAACCCAAATAACCGGCCATCAATGACAAAGGTGGTGAACATGCTAACAGGGAGGTTGCAGAATCTACAGGTGCCGCCTAAGCAGTTTTTCTCAGCTGACAGCCATCCTACTCTGTAA More
Protein seq		MRGFLAATLLVLSLLLNLHTAASVSAWEDKDFFSYCPPSRCGEHGPEIRFPFKLESKNTPSSCGVPCMKLSCSGQYTILHNKYLGRPYKLTAIDYKHALLTAVPLADEDNYSSPSPCPLLKSISIRPNLITGPGYGYYNTGYQNPCQTYDTYYAALVSCSTEFALASVPGTATDNDYIAGPISCLSNQTHFSYLVAYRVTMSLLPLDCEVISDGPIPIPAFYYSGYIPSMFTTSADRILDYPSGYVLSTFRESAERILNSSETMIWWYFYKYDGRHCEQQGRRCAFSSQRNQTFCMGRGSHVKVIAATSSVAAFVILLLMVATALYLSLRTRYNEEIHLKVEMFLKTYGTSKPTRYTFSEVKKIASRFKVKVGQGGFGSVYRGELPNGVPVVVKMLENSKGEGDEFINEVATIGRIHHANIVRLLGFCLEGTRRALIYEYMPNDSLEKYIFSHDSDTSQEVLVPNKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFSPKISDFGLAKLCARDQSIVTLTAARGTMGYIAPELYSRNFGEISYKSDVYSFGMLVLEMVSGRRNSDPSVESQNMVYFPEWIYEQVTAGQDLALGREMTEEEKATTRQLAIVALWCIQWNPNNRPSMTKVVNMLTGRLQNLQVPPKQFFSADSHPTL
Function		Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsCMeo_01g0001310	OsCMeo_01g0001310.01	Chr01	982679	986689	+	NAM
CDS seq	ATGAGAGGATTTCTTGCAGCAACCCTCCTGGTGTTGAGCCTTCTTCTCAACCTGCACACAGCAGCGTCAGTGTCAGCGTGGGAAGACAAGGATTTCTTCAGCTACTGCCCGCCGTCGAGGTGCGGCGAGCATGGCCCCGAGATCAGGTTCCCTTTCAAACTTGAATCCAAAAATACACCATCGTCATGTGGCGTGCCATGCATGAAGCTATCATGCTCTGGCCAATATACCATCCTACATAACAAATACCTTGGAAGGCCATACAAGTTGACCGCCATAGATTACAAGCATGCTCTCCTGACCGCCGTCCCGCTCGCAGACGAAGACAACTACTCCTCACCGTCTCCCTGCCCACTTCTAAAATCCATATCTATCAGGCCAAACTTAATAACAGGGCCAGGCTATGGTTATTACAACACAGGGTACCAGAACCCTTGCCAAACATACGATACCTACTATGCAGCACTAGTAAGCTGTTCAACAGAATTTGCCCTAGCTAGTGTCCCTGGCACTGCCACCGATAACGATTATATTGCTGGCCCCATCTCTTGCCTTAGCAACCAAACCCACTTCTCCTATTTGGTGGCTTATCGTGTAACTATGTCTCTTCTTCCGTTGGACTGCGAGGTCATCTCAGATGGCCCCATTCCGATACCAGCTTTTTATTACTCCGGTTATATCCCATCCATGTTCACAACAAGTGCAGACAGAATCCTCGACTATCCTTCCGGTTATGTCTTATCCACGTTCAGAGAAAGTGCAGAAAGAATCCTCAATTCTTCTGAGACCATGATCTGGTGGTATTTCTACAAGTACGATGGCAGACATTGTGAACAACAAGGCCGACGCTGCGCATTCAGCTCACAAAGGAATCAAACATTCTGCATGGGTAGAGGTTCACATGTCAAAGTAATAGCAGCTACATCTTCGGTTGCTGCATTTGTTATTCTTCTGTTGATGGTGGCCACTGCACTATATCTTTCACTGAGGACAAGATATAATGAAGAGATACATCTGAAGGTAGAAATGTTTCTCAAAACATATGGCACATCGAAACCCACGAGGTACACTTTCTCCGAAGTAAAGAAGATAGCAAGCCGGTTCAAGGTTAAAGTAGGACAAGGTGGATTTGGAAGTGTGTACAGAGGTGAGCTACCAAACGGAGTCCCTGTGGTGGTTAAGATGCTAGAAAACTCCAAAGGGGAGGGAGATGAATTCATCAATGAGGTTGCAACTATCGGGAGAATCCACCATGCAAACATTGTCCGCCTCCTTGGCTTTTGCTTAGAAGGAACAAGGCGGGCTCTCATTTACGAATACATGCCTAACGATTCGCTGGAGAAATATATATTTTCACATGATTCTGATACTTCTCAAGAAGTCCTAGTGCCAAACAAGATGCTAGATATTGCTTTAGGCATTGCCCGAGGAATGGAGTACTTGCATCAAGGATGCAACCAGCGTATCCTCCACTTTGATATCAAGCCTCATAACATCTTGCTGGACTATAACTTCAGTCCGAAGATTTCAGACTTTGGCCTTGCAAAGCTGTGTGCAAGGGACCAAAGCATCGTTACCTTGACTGCAGCAAGAGGCACGATGGGCTATATTGCACCAGAGCTATATTCTCGGAACTTTGGAGAGATATCTTACAAGTCAGATGTTTATAGTTTCGGCATGCTGGTGTTAGAAATGGTTAGCGGAAGGAGGAACTCAGACCCAAGTGTTGAAAGCCAAAACATGGTCTACTTCCCAGAATGGATCTATGAACAGGTTACCGCTGGGCAGGATTTGGCACTTGGTAGGGAAATGACTGAAGAAGAGAAAGCAACAACGAGACAGCTGGCCATTGTGGCACTATGGTGCATTCAGTGGAACCCAAATAACCGGCCATCAATGACAAAGGTGGTGAACATGCTAACAGGGAGGTTGCAGAATCTACAGGTGCCGCCTAAGCAGTTTTTCTCAGCTGACAGCCATCCTACTCTGTAA More
Protein seq	MRGFLAATLLVLSLLLNLHTAASVSAWEDKDFFSYCPPSRCGEHGPEIRFPFKLESKNTPSSCGVPCMKLSCSGQYTILHNKYLGRPYKLTAIDYKHALLTAVPLADEDNYSSPSPCPLLKSISIRPNLITGPGYGYYNTGYQNPCQTYDTYYAALVSCSTEFALASVPGTATDNDYIAGPISCLSNQTHFSYLVAYRVTMSLLPLDCEVISDGPIPIPAFYYSGYIPSMFTTSADRILDYPSGYVLSTFRESAERILNSSETMIWWYFYKYDGRHCEQQGRRCAFSSQRNQTFCMGRGSHVKVIAATSSVAAFVILLLMVATALYLSLRTRYNEEIHLKVEMFLKTYGTSKPTRYTFSEVKKIASRFKVKVGQGGFGSVYRGELPNGVPVVVKMLENSKGEGDEFINEVATIGRIHHANIVRLLGFCLEGTRRALIYEYMPNDSLEKYIFSHDSDTSQEVLVPNKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFSPKISDFGLAKLCARDQSIVTLTAARGTMGYIAPELYSRNFGEISYKSDVYSFGMLVLEMVSGRRNSDPSVESQNMVYFPEWIYEQVTAGQDLALGREMTEEEKATTRQLAIVALWCIQWNPNNRPSMTKVVNMLTGRLQNLQVPPKQFFSADSHPTL More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.303854	0.000000	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0117100	SBH	0.000000	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g02770	RBH	0.894636	1.168902	0.212676
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0117100	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0001290	RBH	0.000000	0.000000	0.163405
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0001080	SBH	0.069754	0.307502	0.332710
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0001330	SBH	0.545073	0.000000	1.479499
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0001190	RBH	0.060770	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0001300	RBH	1.385442	0.0	1.218488
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0016900	SBH	0	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0001280	RBH	0.0	0.0	0.067795
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_01G0015200	SBH	1.617323	0.890693	1.779883
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0001170	RBH	0.907174	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0001350	RBH	0.470036	0.861946	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0001280	RBH	4.810340	6.290120	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0001370	SBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0001290	RBH	0.065702	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G001350	RBH	0.584981	0.000000	0.584613
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0000980	SBH	0.068539	1.712051	0.473257

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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