Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0115500 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:839809-840828 | ||||||||
| Gene Symbol | RLCK10, OsRLCK10, Os8Tak2, YK21, OsRLCK12, RLCK12, RLCK13, OsRLCK13, OsLysM-RLK3, LysM-RLK3, OsLYK1, LYK1 | ||||||||||
| DNA seq | TTAATTTATAGTTCCACTTTGTGCCAAATCGATTCTATCAAATCCAACATCCACCAGATGTGGCATAGGTTCATCATCGCAGAAGAATGGCCTAGAAGGCAATCGCAGACCATCAACATCACCTTCAAGCATCTCTATGACCTCACTCATCGTCGGCCGATCATAGGAATTCATCTGAATGCAATGCAGCCCAACAATACACAACTTCTTTTCCAGCTCATGCATATTAAAGGCACTAGTAACCACCTCACCCAACTCTTGTTGAGCCAGCTGATTATACACCCATGATGGATAATACGCTTGGCTTGAGCTCGACATATCCTGCTTAGAGTTCCTTCGCCCTCCAACCATCTCCAACAGAAGCATTCCAAAGCTATACACGTCAGATTTGCTAGATATGACACCAAAGCTCCAAGATATCATCTCAGGAGCAATATAACCTATTGTTCCTCGTGCAGCACTAACAGGCACAAAACTATTATCCTGTGGGTACAGTTTGGCAAGGCCAAAATCAGCAACTTTTGGAATGAACTTGCTGTCAAGAAGGATGTTGTGCGGCTTGATATCAAAATGTAGAATTTGCATCTCACACCCTCGGTGCAAATAGTTTATTCCTCTAGCAATTCCCAGTGCAATCTCATTGAGCTTTTCCCAAGAGAAACTCTTCTCAGGCGAGAAGATGTACTTCTCCAGAGATCCATTGGGCATGTACTCGTACACAAGTGCTCTCCTTGTTTCCTCGGCACAAAAGCCCACCAACGACACAACATTAACATGATGGATACTACCAATGGTGGAGACCTCGTTGATGAATTCTTCTCCGTCACAACTATAGTTGGCCAGTATCTTGACAGCAACATGGATATTGCCTGGGAGTAGAACACCCTTGTACACAGAACCATAGCCTCCTTGGCCGAGCTTCTCCGATCCCTGAAGTGACCTGTAATTGCAGTGATATCGGTGTAGGCATACCTCGTTGGTCCAAGCATCAGTTGCATACGAAGAAACTTGTCGACTGCG
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| CDS seq | CGCAGTCGACAAGTTTCTTCGTATGCAACTGATGCTTGGACCAACGAGGTATGCCTACACCGATATCACTGCAATTACAGGTCACTTCAGGGATCGGAGAAGCTCGGCCAAGGAGGCTATGGTTCTGTGTACAAGGGTGTTCTACTCCCAGGCAATATCCATGTTGCTGTCAAGATACTGGCCAACTATAGTTGTGACGGAGAAGAATTCATCAACGAGGTCTCCACCATTGGTAGTATCCATCATGTTAATGTTGTGTCGTTGGTGGGCTTTTGTGCCGAGGAAACAAGGAGAGCACTTGTGTACGAGTACATGCCCAATGGATCTCTGGAGAAGTACATCTTCTCGCCTGAGAAGAGTTTCTCTTGGGAAAAGCTCAATGAGATTGCACTGGGAATTGCTAGAGGAATAAACTATTTGCACCGAGGGTGTGAGATGCAAATTCTACATTTTGATATCAAGCCGCACAACATCCTTCTTGACAGCAAGTTCATTCCAAAAGTTGCTGATTTTGGCCTTGCCAAACTGTACCCACAGGATAATAGTTTTGTGCCTGTTAGTGCTGCACGAGGAACAATAGGTTATATTGCTCCTGAGATGATATCTTGGAGCTTTGGTGTCATATCTAGCAAATCTGACGTGTATAGCTTTGGAATGCTTCTGTTGGAGATGGTTGGAGGGCGAAGGAACTCTAAGCAGGATATGTCGAGCTCAAGCCAAGCGTATTATCCATCATGGGTGTATAATCAGCTGGCTCAACAAGAGTTGGGTGAGGTGGTTACTAGTGCCTTTAATATGCATGAGCTGGAAAAGAAGTTGTGTATTGTTGGGCTGCATTGCATTCAGATGAATTCCTATGATCGGCCGACGATGAGTGAGGTCATAGAGATGCTTGAAGGTGATGTTGATGGTCTGCGATTGCCTTCTAGGCCATTCTTCTGCGATGATGAACCTATGCCACATCTGGTGGATGTTGGATTTGATAGAATCGATTTGGCACAAAGTGGAACTATAAATTAA
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| Protein seq | RSRQVSSYATDAWTNEVCLHRYHCNYRSLQGSEKLGQGGYGSVYKGVLLPGNIHVAVKILANYSCDGEEFINEVSTIGSIHHVNVVSLVGFCAEETRRALVYEYMPNGSLEKYIFSPEKSFSWEKLNEIALGIARGINYLHRGCEMQILHFDIKPHNILLDSKFIPKVADFGLAKLYPQDNSFVPVSAARGTIGYIAPEMISWSFGVISSKSDVYSFGMLLLEMVGGRRNSKQDMSSSSQAYYPSWVYNQLAQQELGEVVTSAFNMHELEKKLCIVGLHCIQMNSYDRPTMSEVIEMLEGDVDGLRLPSRPFFCDDEPMPHLVDVGFDRIDLAQSGTIN |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0115500 | Os01t0115500-00 | Chr01 | 839809 | 840828 | - | irgsp1_rep | ||
| CDS seq | CGCAGTCGACAAGTTTCTTCGTATGCAACTGATGCTTGGACCAACGAGGTATGCCTACACCGATATCACTGCAATTACAGGTCACTTCAGGGATCGGAGAAGCTCGGCCAAGGAGGCTATGGTTCTGTGTACAAGGGTGTTCTACTCCCAGGCAATATCCATGTTGCTGTCAAGATACTGGCCAACTATAGTTGTGACGGAGAAGAATTCATCAACGAGGTCTCCACCATTGGTAGTATCCATCATGTTAATGTTGTGTCGTTGGTGGGCTTTTGTGCCGAGGAAACAAGGAGAGCACTTGTGTACGAGTACATGCCCAATGGATCTCTGGAGAAGTACATCTTCTCGCCTGAGAAGAGTTTCTCTTGGGAAAAGCTCAATGAGATTGCACTGGGAATTGCTAGAGGAATAAACTATTTGCACCGAGGGTGTGAGATGCAAATTCTACATTTTGATATCAAGCCGCACAACATCCTTCTTGACAGCAAGTTCATTCCAAAAGTTGCTGATTTTGGCCTTGCCAAACTGTACCCACAGGATAATAGTTTTGTGCCTGTTAGTGCTGCACGAGGAACAATAGGTTATATTGCTCCTGAGATGATATCTTGGAGCTTTGGTGTCATATCTAGCAAATCTGACGTGTATAGCTTTGGAATGCTTCTGTTGGAGATGGTTGGAGGGCGAAGGAACTCTAAGCAGGATATGTCGAGCTCAAGCCAAGCGTATTATCCATCATGGGTGTATAATCAGCTGGCTCAACAAGAGTTGGGTGAGGTGGTTACTAGTGCCTTTAATATGCATGAGCTGGAAAAGAAGTTGTGTATTGTTGGGCTGCATTGCATTCAGATGAATTCCTATGATCGGCCGACGATGAGTGAGGTCATAGAGATGCTTGAAGGTGATGTTGATGGTCTGCGATTGCCTTCTAGGCCATTCTTCTGCGATGATGAACCTATGCCACATCTGGTGGATGTTGGATTTGATAGAATCGATTTGGCACAAAGTGGAACTATAAATTAA
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| Protein seq | RSRQVSSYATDAWTNEVCLHRYHCNYRSLQGSEKLGQGGYGSVYKGVLLPGNIHVAVKILANYSCDGEEFINEVSTIGSIHHVNVVSLVGFCAEETRRALVYEYMPNGSLEKYIFSPEKSFSWEKLNEIALGIARGINYLHRGCEMQILHFDIKPHNILLDSKFIPKVADFGLAKLYPQDNSFVPVSAARGTIGYIAPEMISWSFGVISSKSDVYSFGMLLLEMVGGRRNSKQDMSSSSQAYYPSWVYNQLAQQELGEVVTSAFNMHELEKKLCIVGLHCIQMNSYDRPTMSEVIEMLEGDVDGLRLPSRPFFCDDEPMPHLVDVGFDRIDLAQSGTIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0115500 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02550 | SBH | 0.158974 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0113700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001100 | RBH | 0.094304 | 5.570498 | 1.005969 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001070 | SBH | 0.160955 | 0.171025 | 0.792215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001200 | SBH | 0.140904 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001060 | SBH | 0.112602 | 0.061699 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001210 | RBH | 0.172035 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0016000 | SBH | 1.6942795 | 5.724617 | 3.7314985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001050 | RBH | 0.037199 | 0.353644 | 0.989798 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001050 | SBH | 0.235434 | 0.054611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001240 | SBH | 1.728759 | 0.531123 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001250 | SBH | 2.477113 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001190 | SBH | 0.000000 | 0.000000 | 0.057889 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001040 | RBH | 0.141453 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001240 | SBH | 0.900158 | 1.196784 | 0.692669 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001260 | SBH | 1.303300 | 2.912469 | 1.969413 |
