Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g42540 | OGI:12067830 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:26424870-26425124 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGGAGGCGGCGGCCGGTGGGCTCGACGAGGCGGCGATCAAGGCGCTGCCCAAGGTGGTGTATGGCACGGCGGCGGCGGCGGAGAGCAGCTGCGCGGTGTGCCTCGGCGAGTACGGCGGCGGCGACGAGCTCCGGGTGCTCTCCTGGTGCGCGCACTCCTTCCACCGCCACTGCGTCGACCCGTGGCTGCGCCTCAACCCGACGTGCCCCGTCTGCCGCACCTCGCTCGCCGACCAGCCCACACAATCATGA |
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| CDS seq | ATGGTGGAGGCGGCGGCCGGTGGGCTCGACGAGGCGGCGATCAAGGCGCTGCCCAAGGTGGTGTATGGCACGGCGGCGGCGGCGGAGAGCAGCTGCGCGGTGTGCCTCGGCGAGTACGGCGGCGGCGACGAGCTCCGGGTGCTCTCCTGGTGCGCGCACTCCTTCCACCGCCACTGCGTCGACCCGTGGCTGCGCCTCAACCCGACGTGCCCCGTCTGCCGCACCTCGCTCGCCGACCAGCCCACACAATCATGA |
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| Protein seq | MVEAAAGGLDEAAIKALPKVVYGTAAAAESSCAVCLGEYGGGDELRVLSWCAHSFHRHCVDPWLRLNPTCPVCRTSLADQPTQS |
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| Function | RING-H2 finger protein ATL70 [UniProtKB/Swiss-Prot:Q8RX29] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g42540 | LOC_Os12g42540.1 | Chr12 | 26424870 | 26425124 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGGAGGCGGCGGCCGGTGGGCTCGACGAGGCGGCGATCAAGGCGCTGCCCAAGGTGGTGTATGGCACGGCGGCGGCGGCGGAGAGCAGCTGCGCGGTGTGCCTCGGCGAGTACGGCGGCGGCGACGAGCTCCGGGTGCTCTCCTGGTGCGCGCACTCCTTCCACCGCCACTGCGTCGACCCGTGGCTGCGCCTCAACCCGACGTGCCCCGTCTGCCGCACCTCGCTCGCCGACCAGCCCACACAATCATGA
More
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| Protein seq | MVEAAAGGLDEAAIKALPKVVYGTAAAAESSCAVCLGEYGGGDELRVLSWCAHSFHRHCVDPWLRLNPTCPVCRTSLADQPTQS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.319443 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0620100 | SBH | 0.0 | 0.423502 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44636 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0620100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021170 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021250 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021610 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020920 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020570 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0333900 | SBH | 2.4976225 | 8.2367535 | 10.6987915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020440 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0385000 | RBH | 1.5557425 | 0.357242 | 0.379063 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020700 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020920 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020840 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020920 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021120 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020590 | SBH | 0.000000 | 0.000000 | 0.405072 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020370 | SBH | 0.000000 | 0.000000 | 0.000000 |
