Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g41220 | OGI:12065910 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:25558815-25561100 | ||||||||
| Gene Symbol | OsCROC-1, CROC-1, CROC1, OsCROC1, OsUEV1B, UEV1B | ||||||||||
| DNA seq | TTTAGACTTGCAATGCCAGAAAAAGAACCAGCATAGTACCACTTCAGAAACATAGCCAAATCTGCAGAGCATCACTAGATTCATTACAAAGATTTTACCCCAATTCGTTAGTTTTGTCTCTTGAGGTAATGCCGTACTGGCAAACTGTTAACCAAACAAGCGAGACACGACACAAACACAGGACGTACACGGACCACGTACAAGGTAGTACCAGCGAAGTTCAGCTACAATCATTTGCACCAAATGTTCAGACGGCTCAAATCTCATGCGATATATAGAAAGAGAATTACAATGGTTCATCCATGGCATGCGGAGATGAGTGGCGGGCGCCTGCTTCTAGAAGAATGTCCCCTCTGGAGGCTGCACTAGTTTCCGGTTGTGTGATGCTGCCATCTCTTTCTTAAGTTGGGTCAAGATAGCCTCCATTGTGTACTCGCGGCGCCAATTTGACAACAGGCTGAACTTCCTTTGGTCAACCTACATTAGCTCCAAAAGATAAGTTTTAATTAATCAAATAATTGAACACAAGAGTTAGAAATAATTCTGAACCAAATTTCTCGTGTCATACCAATCCATTCTCTGGGTTTACACAGGTCATGTTGATTCTTGAGTGAAATTTTACAGTTGGTGGCCTGTCTGGGTAGTCCTTGTCGCAGAAAAGCTTCAGTTGGTATATCCGGCCCTCATGGACAGTCTATCAAAAATTCAAATGTTCGAAACCAAATATATATCAACAAGAAAGCGTCGAGCTCAGAACGCAACAGTTACATATGAAGATTATGAGTACAAGAGTAAGCAATGGAAACAAACAACTTACGTTATGGGGACCAATAATTGTGCCTGTCCAAGAGCGCATGTAGATATCGTCTGCATCATCCATTCCATAGCTTACTGATCCATCACCGATGCCCTTCTCCCCTCTCTCAAGCTCTTCTAGCAGTCTGAAGTTCCTAGGCACTGAGATAACATTTATACTAGTTAATAACACAGCTTGCTTCACAGAGCATTAAAAACACAACCAGGATACGATTCTCCTCCTGGTTACATCAAGAAGGTACCAAGGGCAAGTATTTTGCCAAATATCCATTCAAAAACTTATCTTGGCAAATACAAGCATCATGAACTTGTTTTAAAATGTAAGTTCCAAACCCACTAATTTGGATTCAAACCATGAGGATTTATGTAACGAGATGAAATGGGGTCCAAGTGCCCAACTGATTGCAGTAAGTGCTAAGTAATAGACAATCATTTATGAACGGGGAAAAGACAACCGCTAACAAACTATTTTACGCTCTGACCACATAAGCGCAAAAACTGAATGAAGGCTTAGAAGGGAAAAATGTCCAGCCCAAGCATTCGACTCTAGCAATAGTCCTGGACTCCTGGTAAACTACAAGTGATAGCTTCCACCACCAGTTTGGGGCTTTAGGCAAAGCTAGTCTGTCAAACGAAAACATCGTGTATGGAGAAGGCGAGAAGCCCAATACTGCATTCTACCAATCCACAAGTAATAACTGACAACTAATGCTACCTTTCTGAAAGATCCAACATTTCCTGCTCCATGATAAGATTACAAGTACATTTAGCTGCTACTACTATCATTTTAACCGTCATTCATTCAAATAGCACACCTCGAATCCTCGATGCAATAATCGAACAGGGACAAATAGCATATGCCTCTAGTGCACCATATCATGAGGAAAACCACGAAAAACGTCTATACTTTCCCCTTCCCTGATATATCAAGGGAGATTTCGCAATCGTCCTGAATATTAATTAATCGGTACGCAGTGTGTGCGAACCAGAACACATAGCAGCCAAATCGATCTGCTCCGATGATGGATCCACGGCAGGTGACAGCAGCGAGCGAATTGGGACCCCCCCCCCCCCCCCAAAAAAAAAAAAAATCGATCCAATCAATCAATCAATCCATCCATCCATAGAGGAAACGGAGGTTCCGGGGTAGGCTCCGCGCTCGCGCTAGAGGGAGAGGAGGAGATCGGGGGGCGCGGGTCAAAGGAAGCGGATCCAGGAGAAGCTAGGCTTACCGACGACTGCCGATGGATCTCCACTCGACGCCATCCCAGCTGAGCGCAGGCGCCGGCTTCGCGACGACAACCAGAGGCCGCAGCGGCGGATTGGCGGGACAGCGGGCGATCTCCGGCGGCGGCGGCGGAGGAGGGGTTCGCTTCCGTTCCCCTTTGGTGGTGGTGTGTGAGTGCGCGGAGACGAAGCCAACCAAAGAAGAGGGGGGAAGACGAGCCGATCCCCAGAGCCGCGACGATA
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| CDS seq | ATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGACCTGTGTAAACCCAGAGAATGGATTGGTTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCGCCGCGAGTACACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGCAGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAG
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| Protein seq | MASSGDPSAVVVPRNFRLLEELERGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEAILTQLKKEMAASHNRKLVQPPEGTFF |
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| Function | Ubiquitin-conjugating enzyme E2 variant 1C [UniProtKB/Swiss-Prot:Q9SJ44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g41220 | LOC_Os12g41220.1 | Chr12 | 25558815 | 25561100 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGACCTGTGTAAACCCAGAGAATGGATTGGTTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCGCCGCGAGTACACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGCAGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAG
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| Protein seq | MASSGDPSAVVVPRNFRLLEELERGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEAILTQLKKEMAASHNRKLVQPPEGTFF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.599740 | 1.494919 | 7.972179 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0605400 | RBH | 4.085908 | 2.362321 | 32.915691 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g12570 | RBH | 5.695061 | 4.818835 | 12.010252 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0605400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020020 | RBH | 4.920064 | 106.669662 | 24.925266 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020120 | RBH | 1.141883 | 23.726315 | 7.766203 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004680 | SBH | 7.087367 | 115.063004 | 43.429100 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019760 | RBH | 0.720931 | 3.684393 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019340 | SBH | 32.528797 | 151.486603 | 93.450027 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0127000 | SBH | 33.715334 | 56.590271 | 49.5248605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019220 | RBH | 1.269803 | 4.923443 | 6.164557 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0372400 | RBH | 22.7314995 | 34.8899935 | 63.8671455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019470 | SBH | 1.420424 | 1.711678 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019690 | RBH | 2.323588 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004600 | SBH | 38.496426 | 79.335899 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019670 | RBH | 2.975375 | 0.0 | 9.019205 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019830 | RBH | 0.757137 | 53.802593 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019480 | RBH | 2.642365 | 32.171234 | 9.481281 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019180 | SBH | 4.201724 | 63.112083 | 21.555706 |
