Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g05930 | OGI:12007480 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:2732571-2733167 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAGCTGTGTTCCCGATGGAATTCCTCCCGTAAGATTGTTGTACGACAAGTCCAAGTAACTTAAGAACGTTAGATTTGACAGAGTGGCTGGTATTTCCCCTGAGATCTTGTTTAACCAAGCTCGTTAACTGCCCTATCCATTTTGGTAGCGTCCCAGTTAACTGGTTTACTCCGAGGTCTAGTTCCTTCAGTTGATTGGGCGAGCAATTAGACGACAGATTCTTAAACATCTCAGTTATGTCTCCGTATAAGAGAGCCCAGCGAATCTTCAGGACATTCAAACTGCATAGATTGCTAAGGTCCGTGGCCATGACGCCCATGTTCTTGTCACCATCTCCATTAGACGAAAGATCAAGGAATTGTAGGGATGTCATCATCAGTTTGTGCGGAATTTGCCCATACAATCTATTTGAACTGAGGTCAAGGTATTGTAGGCTTGTTATGTTCCAAAACCAGCTGGCCGACATTGGATGGTCGAAGGAGTTACTGGAGGCATCCAGCACCTCAAGGTTTGTGAGGTTCACTGGTAGCAGCAGCTGGTTTGCGGTAGCAAGAGAGCAGCCAGAAAGATTAAGGACCTTCAGAGAAGGGATCAT
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| CDS seq | ATGATCCCTTCTCTGAAGGTCCTTAATCTTTCTGGCTGCTCTCTTGCTACCGCAAACCAGCTGCTGCTACCAGTGAACCTCACAAACCTTGAGGTGCTGGATGCCTCCAGTAACTCCTTCGACCATCCAATGTCGGCCAGCTGGTTTTGGAACATAACAAGCCTACAATACCTTGACCTCAGTTCAAATAGATTGTATGGGCAAATTCCGCACAAACTGATGATGACATCCCTACAATTCCTTGATCTTTCGTCTAATGGAGATGGTGACAAGAACATGGGCGTCATGGCCACGGACCTTAGCAATCTATGCAGTTTGAATGTCCTGAAGATTCGCTGGGCTCTCTTATACGGAGACATAACTGAGATGTTTAAGAATCTGTCGTCTAATTGCTCGCCCAATCAACTGAAGGAACTAGACCTCGGAGTAAACCAGTTAACTGGGACGCTACCAAAATGGATAGGGCAGTTAACGAGCTTGGTTAAACAAGATCTCAGGGGAAATACCAGCCACTCTGTCAAATCTAACGTTCTTAAGTTACTTGGACTTGTCGTACAACAATCTTACGGGAGGAATTCCATCGGGAACACAGCTTAA
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| Protein seq | MIPSLKVLNLSGCSLATANQLLLPVNLTNLEVLDASSNSFDHPMSASWFWNITSLQYLDLSSNRLYGQIPHKLMMTSLQFLDLSSNGDGDKNMGVMATDLSNLCSLNVLKIRWALLYGDITEMFKNLSSNCSPNQLKELDLGVNQLTGTLPKWIGQLTSLVKQDLRGNTSHSVKSNVLKLLGLVVQQSYGRNSIGNTA |
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| Function | Leucine-rich repeat receptor-like protein kinase PXL1 [UniProtKB/Swiss-Prot:Q9FRS6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g05930 | LOC_Os12g05930.1 | Chr12 | 2732571 | 2733167 | - | MSU_osa1r7 | ||
| CDS seq | ATGATCCCTTCTCTGAAGGTCCTTAATCTTTCTGGCTGCTCTCTTGCTACCGCAAACCAGCTGCTGCTACCAGTGAACCTCACAAACCTTGAGGTGCTGGATGCCTCCAGTAACTCCTTCGACCATCCAATGTCGGCCAGCTGGTTTTGGAACATAACAAGCCTACAATACCTTGACCTCAGTTCAAATAGATTGTATGGGCAAATTCCGCACAAACTGATGATGACATCCCTACAATTCCTTGATCTTTCGTCTAATGGAGATGGTGACAAGAACATGGGCGTCATGGCCACGGACCTTAGCAATCTATGCAGTTTGAATGTCCTGAAGATTCGCTGGGCTCTCTTATACGGAGACATAACTGAGATGTTTAAGAATCTGTCGTCTAATTGCTCGCCCAATCAACTGAAGGAACTAGACCTCGGAGTAAACCAGTTAACTGGGACGCTACCAAAATGGATAGGGCAGTTAACGAGCTTGGTTAAACAAGATCTCAGGGGAAATACCAGCCACTCTGTCAAATCTAACGTTCTTAAGTTACTTGGACTTGTCGTACAACAATCTTACGGGAGGAATTCCATCGGGAACACAGCTTAA
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| Protein seq | MIPSLKVLNLSGCSLATANQLLLPVNLTNLEVLDASSNSFDHPMSASWFWNITSLQYLDLSSNRLYGQIPHKLMMTSLQFLDLSSNGDGDKNMGVMATDLSNLCSLNVLKIRWALLYGDITEMFKNLSSNCSPNQLKELDLGVNQLTGTLPKWIGQLTSLVKQDLRGNTSHSVKSNVLKLLGLVVQQSYGRNSIGNTA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0107700 | SBH | 0.0 | 0.0 | 0.747364 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01620 | SBH | 0.0 | 0.0 | 0.286108 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0107700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003720 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003960 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003970 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0068400 | SBH | 6.5464835 | 15.111139 | 5.1680105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0006600 | SBH | 1.0752225 | 0.0054415 | 2.8783265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003790 | RBH | 0.0 | 0.0 | 0.161586 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004030 | RBH | 0.0 | 0.0 | 0.0 |
