Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0004030 | OGI:12007480 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:2860028-2860624 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaagctgtgttcccgatggaattcctcccgtaagattgttgtacgacaagtccaagtaacttaagaacgttagatttgacagagtggctggtatttcccctgagatcttgtttaaccaagctcgttaactgccctatccattttggtagcgtcccagttaactggtttactccgaggtctagttccttcagttgattgggcgagcaattagacgacagattcttaaacatctcagttatgtctccgtataagagagcccagcgaatcttcaggacattcaaactgcatagattgctaaggtccgtggccatgacgcccatgttcttgtcaccatctccattagacgaaagatcaaggaattgtagggatgtcatcatcagtttgtgcggaatttgcccatacaatctatttgaactgaggtcaaggtattgtaggcttgttatgttccaaaaccagctggccgacattggatggtcgaaggagttactggaggcatccagcacctcaaggtttgtgaggttcactggtagcagcagctggtttgcggtagcaagagagcagccagaaagattaaggaccttcagagaagggatcat
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| CDS seq | atgatcccttctctgaaggtccttaatctttctggctgctctcttgctaccgcaaaccagctgctgctaccagtgaacctcacaaaccttgaggtgctggatgcctccagtaactccttcgaccatccaatgtcggccagctggttttggaacataacaagcctacaataccttgacctcagttcaaatagattgtatgggcaaattccgcacaaactgatgatgacatccctacaattccttgatctttcgtctaatggagatggtgacaagaacatgggcgtcatggccacggaccttagcaatctatgcagtttgaatgtcctgaagattcgctgggctctcttatacggagacataactgagatgtttaagaatctgtcgtctaattgctcgcccaatcaactgaaggaactagacctcggagtaaaccagttaactgggacgctaccaaaatggatagggcagttaacgagcttggttaaacaagatctcaggggaaataccagccactctgtcaaatctaacgttcttaagttacttggacttgtcgtacaacaatcttacgggaggaattccatcgggaacacagcttaa
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| Protein seq | MIPSLKVLNLSGCSLATANQLLLPVNLTNLEVLDASSNSFDHPMSASWFWNITSLQYLDLSSNRLYGQIPHKLMMTSLQFLDLSSNGDGDKNMGVMATDLSNLCSLNVLKIRWALLYGDITEMFKNLSSNCSPNQLKELDLGVNQLTGTLPKWIGQLTSLVKQDLRGNTSHSVKSNVLKLLGLVVQQSYGRNSIGNTA |
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| Function | Leucine-rich repeat receptor-like protein kinase PXL1 [UniProtKB/Swiss-Prot:Q9FRS6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0004030 | OsNaBo_12g0004030.01 | Chr12 | 2860028 | 2860624 | - | NAM | ||
| CDS seq | atgatcccttctctgaaggtccttaatctttctggctgctctcttgctaccgcaaaccagctgctgctaccagtgaacctcacaaaccttgaggtgctggatgcctccagtaactccttcgaccatccaatgtcggccagctggttttggaacataacaagcctacaataccttgacctcagttcaaatagattgtatgggcaaattccgcacaaactgatgatgacatccctacaattccttgatctttcgtctaatggagatggtgacaagaacatgggcgtcatggccacggaccttagcaatctatgcagtttgaatgtcctgaagattcgctgggctctcttatacggagacataactgagatgtttaagaatctgtcgtctaattgctcgcccaatcaactgaaggaactagacctcggagtaaaccagttaactgggacgctaccaaaatggatagggcagttaacgagcttggttaaacaagatctcaggggaaataccagccactctgtcaaatctaacgttcttaagttacttggacttgtcgtacaacaatcttacgggaggaattccatcgggaacacagcttaa
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| Protein seq | MIPSLKVLNLSGCSLATANQLLLPVNLTNLEVLDASSNSFDHPMSASWFWNITSLQYLDLSSNRLYGQIPHKLMMTSLQFLDLSSNGDGDKNMGVMATDLSNLCSLNVLKIRWALLYGDITEMFKNLSSNCSPNQLKELDLGVNQLTGTLPKWIGQLTSLVKQDLRGNTSHSVKSNVLKLLGLVVQQSYGRNSIGNTA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0273900 | SBH | 0.083841 | 0.171392 | 0.404404 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g05930 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0273900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003720 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003960 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003970 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0088300 | SBH | 0.2047285 | 0.0990915 | 0.21415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0094100 | SBH | 0.207641 | 0.100472 | 2.23092 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003790 | RBH | 0.0 | 0.0 | 0.161586 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
