Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g45820 | OGI:11081610 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:27723836-27726283 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGGAGTACGTCACATTAAAGTGCCCAACAGCTGCTCAAATGTCCCCGTCGTCTATTCTGAACAGAACTTGTGGAATGGGTGGATGGGCATAAAGACAATGATTTTGACCAAACGCAGAGGGGAAAATATCGGACTTTGGAAGCTGGAAATGATCCCCAACTCTGACCGCTCGGAGAGCCCGCTCATCCTAACCTGATCTGATGCCTTCAGCTTCTAGGTTCAGTAATCCCTCTCTTCTTCGCTTCAGTGATTTATCTAATGCCTTCAACTGCTATTCAGTAATCCCTCTCTAGCTTTGTTTGCTTCAGTGATTTCAATTTTATTATTTGCTTCTGTTCAGCAGTACGTATGCCTTGCAAATCTGTAACATATACGCACTTGATTTGTCTTGAGAGTAATATCTATGGAGGGCGCCATGGTCAGCCTCCCCGGGAGGCTGGAGGAGCTAGTGCGTCGTCACGGCAGCAAGCTGCCCAAGGGTGCAGAGGAGGAGATATCGCTCATCAAGCAAGACCTCGAGAAAATAATATCCGTTCTCCATGGTCACAGCGAGCCAAAACTGGAGGGGCAGGCCATGGTGGTGAGGTGCTGGATGAAGGAGGTGCGCGAGCTCTCCTACGACATCGAGGACTGCATCGACCACTACGAGCACGCCTCAGCTTGGTCCAGTATTCATCGTAGTAAGATCACTCGGCGGCGATGGAGTTGGACGAGGGGCAAAAGGACCCCTCGGCTCCCTGAGAGGCTGAAGCAGCGGCTATGGATGGCGAACAAGATCAGAGAATTCAGCACTCGCTCGCAGGAGGCGCTTCAACGCCACGCCATGTACAACAACCTCAGTGGCATCGCCAGTACTGCTGCTTCTTCTCCATGTGATGCATCTTCTAGCTCATCTTGGCATCCTGGACAGGATGGGAAGGAGAATGGTAAGGTCGGTATCGACTCCTCTGTGCCCATGCTCAAAGGTTGGCTGACTGATGGAGAGAAGCTCAAGGTGGTGTCCATTGTGGGAGTCGGAGGAGTCGGCAAGACGACGCTTGCCAACGAGCTGTACCGCAAGCTTCAATGGCAGTTCGAGTGCCGGGCATTTGTGCGCACATCGCAGAAGACTGATATGAGGAGGATTCTCATCAGCATGCTCTCGCAGGTTCGCCCGCAGCAGCCACCTGATAATTGGAAGGTGAATGTAAGGTGTACATACACGCCTGGTCGCTCTGCCCGGGGGCGACGCGGGCGGCGGAACAAGCCGCGCCACCCCGTCCCTCTCCTCCCCTCAACCACCTCGCCGCCGCCTGAGCCGCCTGAGCTGAGGCGTGCTCGTAGTGGTCGATGCAGTCCTCGATGTCGTAGGAGAGCTCGCGCACCTCCTTCATCCAGCACCTCACCACCATGGCCTGAGCCGGCTTTGCCGGCTGCTGCAAGGACGGCGGCGGCGGGGCGCTCTCTCCCTCACTCGTGGTCTTCACGGTTGGAGCGCCAGCAAGATGGAGCGGAGGGCATCGCGCCAGCATCGTGGGAGGCCGCCGCCGGCGTCCAGATCCGGCGCCGGGAGGCACGGATCCGGGCGCCCCATGGCCGGATCTGCTGCTCTGGGCGGCAAGTTGGGTCTCCGGGCGGCGTCGTCGGTGTGGCTGGCGGCGGGGCCGAGCACGAGACGCCCGGTGGGCGGCGTCGTCGGCGTGGTTGGCGGCGGGCCGGAGGAGGCGTCGGCGTGGACGAGGTTTTGGCGGCGGCATGCAGGCTGCTGGCGACCCCAGCCGGCGGAGGCAGAGGTAGAGGACGCCGGTGCCGTGGGGGTTTGGGAGACGAGGTGGCTAGATCCACCTCCCCTGCCCAGACTCAGCGTCACAGCGGCGCTTGTTGCAGCGGTGGTGAGGCGGCAGGGTGCGGCTACGTGGAGGAAAGGGCGACTCCCGTGTGGCGACGGCGGCGGTGTCTGTGGCGTCTGGCGGTGGCTGTGGCTGTGGCGGCGGCCGCCGCGGCTGCTGTGGCCGCGATGACAACGACAGCAGCGGCTGCTGTGGCACGGTGGAAGGAGGCACGGTGGTGGTGCGTTTCGGTAGCAGCGGCTGCGGTCGCGGTGATCGTGGTCACCGGAGACATGACGGCCTCGACGGCTAGCCGAGGGCGTGGCAGACGGCTGCATCTGGCTGGCGCGGCATCGTTTGGAGGAGGGGTCGGAGACTAGGGCTGTCAACGAGACGAGCTCGAGCGAGCTCGTCTGCCCAAGCTCGAGCTCGACACAAGCTCGAGCCAAGCCTATTGCACCTTCGAGCTTTTAGGCAAGTTCGGCTCGAGCTCGAGCTCGGTGCCGAGCTCGGCCATAAGTAGTATAATATATATTTTAATAATAATCTCTTGATAAGTATAATTATTTTCTAGTAATCACACTAATAAAAGAGTAGAAAATGATTAAAATAAATATATTGTGCTAACACATGCT
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| CDS seq | ATGGAGGGCGCCATGGTCAGCCTCCCCGGGAGGCTGGAGGAGCTAGTGCGTCGTCACGGCAGCAAGCTGCCCAAGGGTGCAGAGGAGGAGATATCGCTCATCAAGCAAGACCTCGAGAAAATAATATCCGTTCTCCATGGTCACAGCGAGCCAAAACTGGAGGGGCAGGCCATGGTGGTGAGGTGCTGGATGAAGGAGGTGGCTAGATCCACCTCCCCTGCCCAGACTCAGCGTCACAGCGGCGCTTGTTGCAGCGGTGGTGAGGCGGCAGGGTGCGGCTACGTGGAGGAAAGGGCGACTCCCGTGTGGCGACGGCGGCGGTGTCTGTGGCGTCTGGCGGTGGCTGTGGCTGTGGCGGCGGCCGCCGCGGCTGCTGTGGCCGCGATGACAACGACAGCAGCGGCTGCTGTGGCACGGTGGAAGGAGGCACGGTGGTGGTGCGTTTCGGTAGCAGCGGCTGCGGTCGCGGTGATCGTGGTCACCGGAGACATGACGGCCTCGACGGCTAGCCGAGGGCGTGGCAGACGGCTGCATCTGGCTGGCGCGGCATCGTTTGGAGGAGGGGTCGGAGACTAG
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| Protein seq | MEGAMVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQAMVVRCWMKEVARSTSPAQTQRHSGACCSGGEAAGCGYVEERATPVWRRRRCLWRLAVAVAVAAAAAAAVAAMTTTAAAAVARWKEARWWCVSVAAAAVAVIVVTGDMTASTASRGRGRRLHLAGAASFGGGVGD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g45820 | LOC_Os11g45820.1 | Chr11 | 27723836 | 27726283 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGGGCGCCATGGTCAGCCTCCCCGGGAGGCTGGAGGAGCTAGTGCGTCGTCACGGCAGCAAGCTGCCCAAGGGTGCAGAGGAGGAGATATCGCTCATCAAGCAAGACCTCGAGAAAATAATATCCGTTCTCCATGGTCACAGCGAGCCAAAACTGGAGGGGCAGGCCATGGTGGTGAGGTGCTGGATGAAGGAGGTGGCTAGATCCACCTCCCCTGCCCAGACTCAGCGTCACAGCGGCGCTTGTTGCAGCGGTGGTGAGGCGGCAGGGTGCGGCTACGTGGAGGAAAGGGCGACTCCCGTGTGGCGACGGCGGCGGTGTCTGTGGCGTCTGGCGGTGGCTGTGGCTGTGGCGGCGGCCGCCGCGGCTGCTGTGGCCGCGATGACAACGACAGCAGCGGCTGCTGTGGCACGGTGGAAGGAGGCACGGTGGTGGTGCGTTTCGGTAGCAGCGGCTGCGGTCGCGGTGATCGTGGTCACCGGAGACATGACGGCCTCGACGGCTAGCCGAGGGCGTGGCAGACGGCTGCATCTGGCTGGCGCGGCATCGTTTGGAGGAGGGGTCGGAGACTAG
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| Protein seq | MEGAMVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQAMVVRCWMKEVARSTSPAQTQRHSGACCSGGEAAGCGYVEERATPVWRRRRCLWRLAVAVAVAAAAAAAVAAMTTTAAAAVARWKEARWWCVSVAAAAVAVIVVTGDMTASTASRGRGRRLHLAGAASFGGGVGD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.852753 | 4.451114 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0685400 | RBH | 5.658151 | 4.260761 | 0.572070 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45750 | SBH | 2.154246 | 1.370123 | 0.517376 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0685400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024350 | SBH | 0.0 | 0.0 | 0.381606 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024210 | SBH | 0.198599 | 2.936731 | 2.884382 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023750 | SBH | 0.966452 | 2.168166 | 3.543668 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023600 | SBH | 0.021435 | 0.193460 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024200 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0438400 | SBH | 0.0861995 | 0.1629875 | 0.368956 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024490 | RBH | 0.251886 | 0.0 | 0.345254 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0437300 | SBH | 0.031796 | 1.864553 | 0.1563785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024380 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024390 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023740 | SBH | 2.832259 | 19.498186 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023690 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024030 | SBH | 0.085596 | 5.207169 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024070 | SBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024250 | SBH | 0.721625 | 24.082403 | 3.023135 |
