Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g29030 | OGI:11048980 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:16807964-16809227 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGTTGGTGGTAGGCGCTTCGGAGGCCACCATGAAGGCCCTCCTGGGCAAGTTGGGAAACCTCCTCGCCCAGGAGTACGCGCTCATCAGGGGTGTCCGCGGCGACATCCAGTACATCAGCGACGAGATGGCCAGCATCCACGCCTTCCTCACCAATCTCAGCAGCTCTGGCAACGACGACGGCCACGACGCGCAGACCAAGGACTGGATGAAGCAGGTCCGCGACATCGCCTACGACATGGAGGACTGCGTCGACGACTTCGCCCACCGTCTCCGTCACGATCCCCGCGGGGACGGATGCCTCGTCGAGGTGTACAGGGCGCTGTACGAGATCTACACCTGCAGGCCTCGCTGTGACATCGCCGCCAAGCTCGCCGAGCTCAAGAACCGTGCTCAGCAAGTGGGCGAGCGGCGCTTGCGATACGGCGTCGTCCTCAACCCGATTCCCCCTCAGCGCGGCGAGACCCGCAATGGTGACCAGACCACGGGAGAGAACCAGGTGGCCGGGCGCCGGCTCATAACCGTAAAGGAGCCCATCGGCGTGGCGCGCGCCATCGAGAAACTCGAGGCGTGGATGAAAAGCCAAAGTCACAAGAACCGCGGTGTGCTAGCCATCCATGGGTTTGGTGGCGGGGGCAAGAGCACAATCGCGGCGGCGCTGTACCGGAAGCATGGCCAAAATTTCGACTGCCGAGCGTGGGTGACGATGCCCCAGAAGTTTGACGACCGTGCGGTCCTCAGGAGCATCCTGAGTCAGGTCATGCTGCCTGCCACTGCCAGTGGTGGTGGCGACCGCAGGCGACGAGGAGGAAGCAGACACGCAAAGATTGAAACCATGTCCCAGGAACAACTCATCAAAGGGCTGAAGAACCACCTGCAAAATAAGAGGTACCTACCTACTACCTTAACCGAACGTTTTTACATAGAGTGTATATTGCACTGACCGCAGGGTAGTACAACTAGATCAATAGATGGCCAAAAGGCCCGAGGCCCGACGACCCGGCCCACGGCACGGTGTTTTGGCCTGGCCCAAGCACGGCACGGCCCGTCAAGGGTCGGGCCCGTGCCGGCCCGGCCCGACCACCGGGCCGTGCCTGGGCCTCTCCACTGGCACGATGGGCCGCAGGCCAGGCCCGACACATAAACAATAGGGAGTAAAAATAGACATATTATTTGCCACGGTCGAAAGAATAGGGACGTAAAATAGACTTATTTTACCTATATATATATATGTCAGCCCAAAGAGGAGGGGCGGAAAATAG
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| CDS seq | ATGGAGTTGGTGGTAGGCGCTTCGGAGGCCACCATGAAGGCCCTCCTGGGCAAGTTGGGAAACCTCCTCGCCCAGGAGTACGCGCTCATCAGGGGTGTCCGCGGCGACATCCAGTACATCAGCGACGAGATGGCCAGCATCCACGCCTTCCTCACCAATCTCAGCAGCTCTGGCAACGACGACGGCCACGACGCGCAGACCAAGGACTGGATGAAGCAGGTCCGCGACATCGCCTACGACATGGAGGACTGCGTCGACGACTTCGCCCACCGTCTCCGTCACGATCCCCGCGGGGACGGATGCCTCGTCGAGGTGTACAGGGCGCTGTACGAGATCTACACCTGCAGGCCTCGCTGTGACATCGCCGCCAAGCTCGCCGAGCTCAAGAACCGTGCTCAGCAAGTGGGCGAGCGGCGCTTGCGATACGGCGTCGTCCTCAACCCGATTCCCCCTCAGCGCGGCGAGACCCGCAATGGTGACCAGACCACGGGAGAGAACCAGGTGGCCGGGCGCCGGCTCATAACCGTAAAGGAGCCCATCGGCGTGGCGCGCGCCATCGAGAAACTCGAGGCGTGGATGAAAAGCCAAAGTCACAAGAACCGCGGTGTGCTAGCCATCCATGGGTTTGGTGGCGGGGGCAAGAGCACAATCGCGGCGGCGCTGTACCGGAAGCATGGCCAAAATTTCGACTGCCGAGCGTGGGTGACGATGCCCCAGAAGTTTGACGACCGTGCGGTCCTCAGGAGCATCCTGAGTCAGGTCATGCTGCCTGCCACTGCCAGTGGTGGTGGCGACCGCAGGCGACGAGGAGGAAGCAGACACGCAAAGATTGAAACCATGTCCCAGGAACAACTCATCAAAGGGCTGAAGAACCACCTGCAAAATAAGAGCCCAAAGAGGAGGGGCGGAAAATAG
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| Protein seq | MELVVGASEATMKALLGKLGNLLAQEYALIRGVRGDIQYISDEMASIHAFLTNLSSSGNDDGHDAQTKDWMKQVRDIAYDMEDCVDDFAHRLRHDPRGDGCLVEVYRALYEIYTCRPRCDIAAKLAELKNRAQQVGERRLRYGVVLNPIPPQRGETRNGDQTTGENQVAGRRLITVKEPIGVARAIEKLEAWMKSQSHKNRGVLAIHGFGGGGKSTIAAALYRKHGQNFDCRAWVTMPQKFDDRAVLRSILSQVMLPATASGGGDRRRRGGSRHAKIETMSQEQLIKGLKNHLQNKSPKRRGGK |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g29030 | LOC_Os11g29030.1 | Chr11 | 16807964 | 16809227 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGTTGGTGGTAGGCGCTTCGGAGGCCACCATGAAGGCCCTCCTGGGCAAGTTGGGAAACCTCCTCGCCCAGGAGTACGCGCTCATCAGGGGTGTCCGCGGCGACATCCAGTACATCAGCGACGAGATGGCCAGCATCCACGCCTTCCTCACCAATCTCAGCAGCTCTGGCAACGACGACGGCCACGACGCGCAGACCAAGGACTGGATGAAGCAGGTCCGCGACATCGCCTACGACATGGAGGACTGCGTCGACGACTTCGCCCACCGTCTCCGTCACGATCCCCGCGGGGACGGATGCCTCGTCGAGGTGTACAGGGCGCTGTACGAGATCTACACCTGCAGGCCTCGCTGTGACATCGCCGCCAAGCTCGCCGAGCTCAAGAACCGTGCTCAGCAAGTGGGCGAGCGGCGCTTGCGATACGGCGTCGTCCTCAACCCGATTCCCCCTCAGCGCGGCGAGACCCGCAATGGTGACCAGACCACGGGAGAGAACCAGGTGGCCGGGCGCCGGCTCATAACCGTAAAGGAGCCCATCGGCGTGGCGCGCGCCATCGAGAAACTCGAGGCGTGGATGAAAAGCCAAAGTCACAAGAACCGCGGTGTGCTAGCCATCCATGGGTTTGGTGGCGGGGGCAAGAGCACAATCGCGGCGGCGCTGTACCGGAAGCATGGCCAAAATTTCGACTGCCGAGCGTGGGTGACGATGCCCCAGAAGTTTGACGACCGTGCGGTCCTCAGGAGCATCCTGAGTCAGGTCATGCTGCCTGCCACTGCCAGTGGTGGTGGCGACCGCAGGCGACGAGGAGGAAGCAGACACGCAAAGATTGAAACCATGTCCCAGGAACAACTCATCAAAGGGCTGAAGAACCACCTGCAAAATAAGAGCCCAAAGAGGAGGGGCGGAAAATAG
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| Protein seq | MELVVGASEATMKALLGKLGNLLAQEYALIRGVRGDIQYISDEMASIHAFLTNLSSSGNDDGHDAQTKDWMKQVRDIAYDMEDCVDDFAHRLRHDPRGDGCLVEVYRALYEIYTCRPRCDIAAKLAELKNRAQQVGERRLRYGVVLNPIPPQRGETRNGDQTTGENQVAGRRLITVKEPIGVARAIEKLEAWMKSQSHKNRGVLAIHGFGGGGKSTIAAALYRKHGQNFDCRAWVTMPQKFDDRAVLRSILSQVMLPATASGGGDRRRRGGSRHAKIETMSQEQLIKGLKNHLQNKSPKRRGGK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.101847 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0480000 | RBH | 0.087538 | 0.599750 | 0.427907 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g09710 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0480000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013890 | RBH | 0.0 | 0.000000 | 0.707032 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022030 | RBH | 0.121768 | 1.749102 | 1.113316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013810 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013910 | RBH | 0.0 | 4.402389 | 2.512850 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0243700 | SBH | 0.2004855 | 2.69504 | 0.7056745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013870 | RBH | 0.0 | 0.535263 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0258700 | SBH | 0.791088 | 2.0111995 | 2.6485795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020080 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019700 | SBH | 0.0 | 24.861574 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023770 | SBH | 0.237856 | 0.0 | 0.151067 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019610 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019630 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013870 | RBH | 0.0 | 8.784555 | 0.0 |
