Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0013810 | OGI:11048980 | 9/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:16347594-16351506 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagttggtggtaggcgcttcggaggccaccatgaaggccctcctgggcaagttgggaaacctcctcgcccaggagtacgcgctcatcaggggtgtccgcggcgacatccagtacatcagcgacgagatggccagcatccacgccttcctcaccaatctcagcagctctggcaacgacgacggccacgacgcgcagaccaaggactggatgaagcaggtccgcgacatcgcctacgacatggaggactgcgtcgacgacttcgcccaccgtctccgtcacgatccccgcggggacggatgcctcgtcgaggtgtacagggcgctgtacgagatctacacctgcaggcctcgctgtgacatcgccgccaagctcgccgagctcaagaaccgtgctcagcaagtgggcgagcggcgcttgcgatacggcgtcgtcctcaacccgattccccctcagcgcggcgagacccgcaatggtgaccagaccacgggagagaaccaggtggccgggcgccggctcataaccgtaaaggagcccatcggcgtggcgcgcgccatcgagaaactcgaggcgtggatgaaaagccaaagtcacaagaaccgcggtgtgctagccatccatgggtttggtggcgggggcaagagcacaatcgcggcggcgctgtaccggaagcatggccaaaatttcgactgccgagcgtgggtgacgatgccccagaagtttgacgaccgtgcggtcctcaggagcatcctgagtcaggtcatgctgcctgccactgccagtggtggtggcgaccgcaggcgacgaggaggaagcagacacgcaaagattgaaaccatgtcccaggaacaactcatcaaagggctgaagaaccacctgcaaaataagaggtacctacctactaccttaaccgaacgtttttacatagagtgtatattgcactgaccgcaggggtagtacaactagatcaatagatggccaaaaggcccgaggcccgacgacccggcccacggcacggcgttttggcctggcccaagcacggcacggcccgtcaagggtcgggcccgtgccggcccggcccgaccaccgggccgtgcctgggcctctccactggcacgatgggccgcaggccaggcccgacacataaacaatagggagtaaaaatagacatattatttgccacggtcgaaagaatagggacgtaaaatagacttattttacctatatatatatgtcagcccaaagaggaggggcggaaaatagacttacttcctccgtcccacaatacttgtctctttcgcatttaaaatttgtcccaaaataggcgaaattgctatttggcgatcggtcgcgcgcacccctctccgtgcgactggacacgtggcgcgcgcggagagggggcggcgacggcgcgccgcgcgagaggagctccgtgttttcccttttttttgtttttctcggtttctctctttttctttttctgtttttattccataatatccgttttttcttttccgtatcttttttctgtataaatacgtatgtatgcaaactttgtatacgcgtatataaagtttgtatacgtgtatgcaaactttgtatacgcgtatgcaaactttgtatatgcgtatgtaaactttatatacgtgtattttttttgtttttatatgtacatataccaattttgtatacacatatataaagtttgtatacatgtattttttttaggtttttatacatacgtatacaaagtttgtatacacatatataaagtttatatgcacgtattttttaggttatatatacgtattttttaggatttttatacatgtatatttttttatagtagtagtagaatagtagtactagtagtattacttactactactagtaataggtagtagtatcactgtatgagtagtaattgtagtctagtagtagtagtgcttagattaagatggtagtactactcctaggttgtgattagattcaaagtttgatccaaacttcggtccttttccatcccatcaacctgtcatacacacacaacttttcaatcacatcatctccaatttcaaccaaaattcaaattttgcgctgaactaaacacagccctggagtcctggggcgtgcgattaggaggactagtagtagaagtaccttagtactagtagtggtcgcgcgcctggaggtgcgcgcgattagtcgcccattagcgtcaccccaaaatagttgtcacttgcaagtagtacttgtcacatcaaccacttcaaattcaaatttgtctccatcatacccccaaccaccattcaacatctaactatataatattttattaagggtattatagtctttttcttctaaccttagcacatgctaaacaacctagaatgacaagtattctgggacagaggtagtatttcactatatatatgtcacagtctaaattggagggacggaaaatagacttattttcgctatatatatgtcacagcccaaacaggagggacaaaaaatagacttatttaaaaaaggcacgatgggccacccgcgccttcgggccggcccgacacagcccgacggctggtgggccgtgcctgggcgggaggcgcagcccatgggccggcacggcccggcacgaagtgccggccgtgcctgggccgggccatgcagggcgggccttttggccatctataactagatcacacttcttataattaatacttgcttaaccgtagtggcaaacctatgattttaggatttcaacacaaaatcttgggtctatttggttctctatcctatcgatttaatggtagtgcaaaaatttaggtaaattttggcacttccaattctttggtaggatagaattcatataatatgtgtttggtttgctaccatttgttaccaaaatgcttgttacagtgaagaaagttttagagtgctaccaaattatgtatgtgtattgccaatgctttggctctaatccaaaccaatcaaactactatttcaattgccaaacaattagtagcgcacattttggcatcaatccaaaatgaccccttaagcgctattacgagtctttatctatgcacacaaataaaaattaattaatttatcaagagcacggcacaaatatcatatccatatataattatttgattgatttaatttaatcaaagtcacaaaacaatgttatctttgaactcgttgatttcaaattttagttttgaataaaaaatatatcaactaaaccagccagggaccacgcctgcgggctgcggcctgccacctttgggtgtcgctctcgggataaatttcataatttgacattaaatacggacaccttttattcgtcatctagtaatttgcgcgcctttcccaattacaccggcatgcgaatttcttactgtagttcggtgccaaactgccattccgtttgtctgcttaagacgcgccgtccgtccatccgctggtgtcatcgtcgtctgtccaccgtcaccgccataccacgatagcttggcgtggcatacagaacgatagcatcgccgatagtggcggaggatgaatagaaaatgagcattcgccgctgttcacctcctcctataggcagacacgataacatcgttgccaatctattaacttattaaagtttagaaattctcacattacttaaagtctctactattataaaaattaaaaatatttttgccggcactttggtaagtcatccatgtatgagtcgattttggaaatacaaaattaagtttgatcacttttgaaaatacatattgtttttaagtcgggtttaagttcgttcgtttttgaaaatatagaaagagtcgtataagaattctctttaaaaaaaactctcatgctaacttaaaacgatcggacttttaattgcagcttatga
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| CDS seq | atggagttggtggtaggcgcttcggaggccaccatgaaggccctcctgggcaagttgggaaacctcctcgcccaggagtacgcgctcatcaggggtgtccgcggcgacatccagtacatcagcgacgagatggccagcatccacgccttcctcaccaatctcagcagctctggcaacgacgacggccacgacgcgcagaccaaggactggatgaagcaggtccgcgacatcgcctacgacatggaggactgcgtcgacgacttcgcccaccgtctccgtcacgatccccgcggggacggatgcctcgtcgaggtgtacagggcgctgtacgagatctacacctgcaggcctcgctgtgacatcgccgccaagctcgccgagctcaagaaccgtgctcagcaagtgggcgagcggcgcttgcgatacggcgtcgtcctcaacccgattccccctcagcgcggcgagacccgcaatggtgaccagaccacgggagagaaccaggtggccgggcgccggctcataaccgtaaaggagcccatcggcgtggcgcgcgccatcgagaaactcgaggcgtggatgaaaagccaaagtcacaagaaccgcggtgtgctagccatccatgggtttggtggcgggggcaagagcacaatcgcggcggcgctgtaccggaagcatggccaaaatttcgactgccgagcgtgggtgacgatgccccagaagtttgacgaccgtgcggtcctcaggagcatcctgagtcaggtcatgctgcctgccactgccagtggtggtggcgaccgcaggcgacgaggaggaagcagacacgcaaagattgaaaccatgtcccaggaacaactcatcaaagggctgaagaaccacctgcaaaataagagcttatga
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| Protein seq | MELVVGASEATMKALLGKLGNLLAQEYALIRGVRGDIQYISDEMASIHAFLTNLSSSGNDDGHDAQTKDWMKQVRDIAYDMEDCVDDFAHRLRHDPRGDGCLVEVYRALYEIYTCRPRCDIAAKLAELKNRAQQVGERRLRYGVVLNPIPPQRGETRNGDQTTGENQVAGRRLITVKEPIGVARAIEKLEAWMKSQSHKNRGVLAIHGFGGGGKSTIAAALYRKHGQNFDCRAWVTMPQKFDDRAVLRSILSQVMLPATASGGGDRRRRGGSRHAKIETMSQEQLIKGLKNHLQNKSL |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0013810 | OsCMeo_11g0013810.01 | Chr11 | 16347594 | 16351506 | + | NAM | ||
| CDS seq | atggagttggtggtaggcgcttcggaggccaccatgaaggccctcctgggcaagttgggaaacctcctcgcccaggagtacgcgctcatcaggggtgtccgcggcgacatccagtacatcagcgacgagatggccagcatccacgccttcctcaccaatctcagcagctctggcaacgacgacggccacgacgcgcagaccaaggactggatgaagcaggtccgcgacatcgcctacgacatggaggactgcgtcgacgacttcgcccaccgtctccgtcacgatccccgcggggacggatgcctcgtcgaggtgtacagggcgctgtacgagatctacacctgcaggcctcgctgtgacatcgccgccaagctcgccgagctcaagaaccgtgctcagcaagtgggcgagcggcgcttgcgatacggcgtcgtcctcaacccgattccccctcagcgcggcgagacccgcaatggtgaccagaccacgggagagaaccaggtggccgggcgccggctcataaccgtaaaggagcccatcggcgtggcgcgcgccatcgagaaactcgaggcgtggatgaaaagccaaagtcacaagaaccgcggtgtgctagccatccatgggtttggtggcgggggcaagagcacaatcgcggcggcgctgtaccggaagcatggccaaaatttcgactgccgagcgtgggtgacgatgccccagaagtttgacgaccgtgcggtcctcaggagcatcctgagtcaggtcatgctgcctgccactgccagtggtggtggcgaccgcaggcgacgaggaggaagcagacacgcaaagattgaaaccatgtcccaggaacaactcatcaaagggctgaagaaccacctgcaaaataagagcttatga
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| Protein seq | MELVVGASEATMKALLGKLGNLLAQEYALIRGVRGDIQYISDEMASIHAFLTNLSSSGNDDGHDAQTKDWMKQVRDIAYDMEDCVDDFAHRLRHDPRGDGCLVEVYRALYEIYTCRPRCDIAAKLAELKNRAQQVGERRLRYGVVLNPIPPQRGETRNGDQTTGENQVAGRRLITVKEPIGVARAIEKLEAWMKSQSHKNRGVLAIHGFGGGGKSTIAAALYRKHGQNFDCRAWVTMPQKFDDRAVLRSILSQVMLPATASGGGDRRRRGGSRHAKIETMSQEQLIKGLKNHLQNKSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0480000 | RBH | 0.087538 | 0.599750 | 0.427907 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29030 | RBH | 0.101847 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0480000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013890 | RBH | 0.0 | 0.000000 | 0.707032 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022030 | SBH | 0.121768 | 1.749102 | 1.113316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013910 | RBH | 0.0 | 4.402389 | 2.512850 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013870 | RBH | 0.0 | 0.535263 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0258700 | SBH | 0.791088 | 2.0111995 | 2.6485795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024510 | SBH | 0.0 | 0.160680 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019700 | SBH | 0.0 | 24.861574 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023770 | SBH | 0.237856 | 0.0 | 0.151067 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024140 | SBH | 0.323227 | 4.796237 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024150 | SBH | 0.672735 | 2.039785 | 0.923535 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013870 | RBH | 0.0 | 8.784555 | 0.0 |
