Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g10280 | OGI:11016670 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:5580094-5582565 | ||||||||
| Gene Symbol | SDK12 | ||||||||||
| DNA seq | TTAAGTTATGGCTGCAAGTAGTCTTGGCATGGGGGGCATGTCAATCTCCTGCAGACCCTCAAGAAAGCGAACCACTTCAGCCATTGTTGGCCTATCAATTTCATTTTCTTGGATGCACCAACAAGCAACTTTACAAACCCTTTCAGCCTCTTCCAAATTGAAATCACCATGTAATTCTGGATCAAGCAAATTCTGCACACTTCCCTCATGAAGTTTGCTGATGGCTTGCACAGGAAAATAATCAAAATGATAATGGTTGCTTGTGTATGCGTCGGATAAATTCCTCCTTCCTGATATGATTTCTAGCAGTACCATACCAAAGCTGTAAACATCAACTTTTGGAGTAATAGCGACTCCGCTAAGCCACTCTGGGGCAAGATACCCTTTAGTTCCCCTGAAAGTAGTTAGAACCCGACTAAAATCCCTTCTCACAAATGCCGCCATCCCACAGTCTGCAATTTTGGGAGCAAATGATGCTTCAACAAGTATATTTTCTGGCTTAATATCACAGTGTATTATGCATTCATGGCAACTCTCATGCAAGTAGGACAATCCTCTAGCAACTCCTATGGCTATTTGATGCCTAGTGCTCCAATCTAGGACGGCACCATTGCTATGAAAAAGGTGGGCATCAAGAGAACCATTTATCATGTGCTCATACACAAGAAGCCTCTTATCACCTTCATAGCAGAGACCAATCAATTTGACAAGGTTTATATGTTGAATCAATCCAAGTGATCTCACCTCAGCCCTGAATTACTTTTCACCCTGATGCAAACCATCGAGCCGTTTCACTGCAATTGTAGTCGAGTCACTTAATACTCCCTTGAACACAGAACCAAAACCACCTGACCCTAGCTTTTCTGAGAAGATTTTAGTGGCATGACTTAAATCAGTATATCTAAAGGCTACTATTCCGCTGTTGCCTTGAGTGTGATGTAATGGCATACCACAACACTTGAGTTTGTTTTGCCAAATCAAGAACAACAACAAGAGCATTAATAACCCAAAACCAGTAATGCTTGCTATTAATGTAACAGCCGCAGGAACTGGTTTTCGTTTGTTTTTGGTTGAAGCTGGCATATCTTTTGCAGCAAGGCGAAGATAAAGAGTATCTTCAGAAAGACTTTCAATGCTATCTTGTAGCCTTAAATTAAGCAGTTCCCCACGCCAGGCATAGCATGTGCTATCTTCATAGGCATAAGCAATGCAAGAGCAGTTTCTAAGACAAGCTTCTTCGCATTTGCTCTGAGTGGTAGCATCTTCTACTCTTTTATGATTTGTGGGCAATACGCCACGACCTATTGCGAGGAACATGTCTATCGAGCTCCTATTACTAGAGCAATCTAATGGTGTATTTCTGAAGCAACCCGCAGTTCGATCCATGAGCTCCCAATCTTGTGGTGACTTCGGAGAGAAGCCCTCCATACAATCACAAAATGGTTTTCTACTGCCATCGCAGACGCCAAAAGGTCCGCAAGTAGCAATGCAGAAACTGAATGGTCCGCAGGCAGCAAATAAAGCGCAGGGATCAGTGGGATGGGCATATACTTCTTGCCAATATTGATTAACTTGCGACCAAATGCTCAACTTGAGCTGGCCAGACATGTCTATTGAGACAAATGAGGAAGCTAATTCGTCTGATGAGTGGTACATGAAGTATTCCTCTTCATCATTATTAACATAAGATGGCATAAGGAAACCTTTGGTCTGTGAATTCATCTCTAGTTGCGAATTATGTAACGGTATGAGCATGTTCGTCAATTGTACCGATGACCAGGTCAAATACTCTATGTAAGGATCTCGACGCCACAGGATAAAACCCCTCTCGTTCAGTTGGACGAAATATGAGCCGAGACCTGGATCAATAAGGTTTTTCTTTGATATACCGGTACGATGCAACCCGGTGACCTTATTCCACCCAAACTTTGCACCAGGAAGCACAAGATCTGTCGCGTCATCAAAGCTCTGCCACAGATAAACATCAGATAGGCTTTCTATGACAAGGTTTCCACTATCCAAGAGAATTGCACTAGTATTCATGCTGGTTTTGGCTTGTGCTGTCCTATTGGCAATTTGTCTGGACCATACTGTGGATTCAGTGGCACGGTTTATGATGATGGCAAGGCTACTGCCATCTTGTGAGAATTTCAGCTGTGCTAGATTAAGCTCGTGATCAGTTATTGGCCTCTCCCTGTTTGCAACCCACACGGTGGTACAAACTGGAATCTCGTTGAACCATATGGCGAGGTACCAGCCAGGAGATGCAATGTTTTTATACTTACTTCCAGCGTCTTCAGGGAGTGTAGGCTTGAAGAAGCCGAGCGCGAACTTGCCATTTCTCGAGATGAGCTTTTCGCCAACGGCGAGCAACTGGCCCGCCGCAAGAGTGTCATTTGTGGCATAGCATGATGGAGTGTGCATTGAGAGGAGGAGGAGGAGGAGCCCGAGATAGGCGTGGAGGGGAGGCAT
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| CDS seq | ATGCCTCCCCTCCACGCCTATCTCGGGCTCCTCCTCCTCCTCCTCTCAATGCACACTCCATCATGCTATGCCACAAATGACACTCTTGCGGCGGGCCAGTTGCTCGCCGTTGGCGAAAAGCTCATCTCGAGAAATGGCAAGTTCGCGCTCGGCTTCTTCAAGCCTACACTCCCTGAAGACGCTGGAAGTAAGTATAAAAACATTGCATCTCCTGGCTGGTACCTCGCCATATGGTTCAACGAGATTCCAGTTTGTACCACCGTGTGGGTTGCAAACAGGGAGAGGCCAATAACTGATCACGAGCTTAATCTAGCACAGCTGAAATTCTCACAAGATGGCAGTAGCCTTGCCATCATCATAAACCGTGCCACTGAATCCACAGTATGGTCCAGACAAATTGCCAATAGGACAGCACAAGCCAAAACCAGCATGAATACTAGTGCAATTCTCTTGGATAGTGGAAACCTTGTCATAGAAAGCCTATCTGATGTTTATCTGTGGCAGAGCTTTGATGACGCGACAGATCTTGTGCTTCCTGGTGCAAAGTTTGGGTGGAATAAGGTCACCGGGTTGCATCGTACCGGTATATCAAAGAAAAACCTTATTGATCCAGGTCTCGGCTCATATTTCGTCCAACTGAACGAGAGGGGTTTTATCCTGTGGCGTCGAGATCCTTACATAGAGTATTTGACCTGGTCATCGGTACAATTGACGAACATGCTCATACCGTTACATAATTCGCAACTAGAGATGAATTCACAGACCAAAGGTTTCCTTATGCCATCTTATGTTAATAATGATGAAGAGGAATACTTCATGTACCACTCATCAGACGAATTAGCTTCCTCATTTGTCTCAATAGACATGTCTGGCCAGCTCAAGTTGAGCATTTGGTCGCAAGTTAATCAATATTGGCAAGAAGTATATGCCCATCCCACTGATCCCTGCGCTTTATTTGCTGCCTGCGGACCATTCAGTTTCTGCATTGCTACTTGCGGACCTTTTGGCGTCTGCGATGGCAGTAGAAAACCATTTTGTGATTGTATGGAGGGCTTCTCTCCGAAGTCACCACAAGATTGGGAGCTCATGGATCGAACTGCGGGTTGCTTCAGAAATACACCATTAGATTGCTCTAGTAATAGGAGCTCGATAGACATGTTCCTCGCAATAGGTCGTGGCGTATTGCCCACAAATCATAAAAGAGTAGAAGATGCTACCACTCAGAGCAAATGCGAAGAAGCTTGTCTTAGAAACTGCTCTTGCATTGCTTATGCCTATGAAGATAGCACATGCTATGCCTGGCGTGGGGAACTGCTTAATTTAAGGCTACAAGATAGCATTGAAAGTCTTTCTGAAGATACTCTTTATCTTCGCCTTGCTGCAAAAGATATGCCAGCTTCAACCAAAAACAAACGAAAACCAGTTCCTGCGGCTGTTACATTAATAGCAAGCATTACTGGTTTTGGGTTATTAATGCTCTTGTTGTTGTTCTTGATTTGGCAAAACAAACTCAAGTGTTGTGGTATGCCATTACATCACACTCAAGGCAACAGCGGAATAGTAGCCTTTAGATATACTGATTTAAGTCATGCCACTAAAATCTTCTCAGAAAAGCTAGGGTCAGGTGGTTTTGGTTCTGTGTTCAAGGGAGTATTAAGTGACTCGACTACAATTGCAGTGAAACGGCTCGATGGTGATAAGAGGCTTCTTGTGTATGAGCACATGATAAATGGTTCTCTTGATGCCCACCTTTTTCATAGCAATGGTGCCGTCCTAGATTGGAGCACTAGGCATCAAATAGCCATAGGAGTTGCTAGAGGATTGTCCTACTTGCATGAGAGTTGCCATGAATGCATAATACACTGTGATATTAAGCCAGAAAATATACTTGTTGAAGCATCATTTGCTCCCAAAATTGCAGACTGTGGGATGGCGGCATTTGTGAGAAGGGATTTTAGTCGGGTTCTAACTACTTTCAGGGGAACTAAAGGGTATCTTGCCCCAGAGTGGCTTAGCGGAGTCGCTATTACTCCAAAAGTTGATGTTTACAGCTTTGGTATGGTACTGCTAGAAATCATATCAGGAAGGAGGAATTTATCCGACGCATACACAAGCAACCATTATCATTTTGATTATTTTCCTGTGCAAGCCATCAGCAAACTTCATGAGGGAAGTGTGCAGAATTTGCTTGATCCAGAATTACATGGTGATTTCAATTTGGAAGAGGCTGAAAGGGTTTGTAAAGTTGCTTGTTGGTGCATCCAAGAAAATGAAATTGATAGGCCAACAATGGCTGAAGTGGTTCGCTTTCTTGAGGGTCTGCAGGAGATTGACATGCCCCCCATGCCAAGACTACTTGCAGCCATAACTTAA
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| Protein seq | MPPLHAYLGLLLLLLSMHTPSCYATNDTLAAGQLLAVGEKLISRNGKFALGFFKPTLPEDAGSKYKNIASPGWYLAIWFNEIPVCTTVWVANRERPITDHELNLAQLKFSQDGSSLAIIINRATESTVWSRQIANRTAQAKTSMNTSAILLDSGNLVIESLSDVYLWQSFDDATDLVLPGAKFGWNKVTGLHRTGISKKNLIDPGLGSYFVQLNERGFILWRRDPYIEYLTWSSVQLTNMLIPLHNSQLEMNSQTKGFLMPSYVNNDEEEYFMYHSSDELASSFVSIDMSGQLKLSIWSQVNQYWQEVYAHPTDPCALFAACGPFSFCIATCGPFGVCDGSRKPFCDCMEGFSPKSPQDWELMDRTAGCFRNTPLDCSSNRSSIDMFLAIGRGVLPTNHKRVEDATTQSKCEEACLRNCSCIAYAYEDSTCYAWRGELLNLRLQDSIESLSEDTLYLRLAAKDMPASTKNKRKPVPAAVTLIASITGFGLLMLLLLFLIWQNKLKCCGMPLHHTQGNSGIVAFRYTDLSHATKIFSEKLGSGGFGSVFKGVLSDSTTIAVKRLDGDKRLLVYEHMINGSLDAHLFHSNGAVLDWSTRHQIAIGVARGLSYLHESCHECIIHCDIKPENILVEASFAPKIADCGMAAFVRRDFSRVLTTFRGTKGYLAPEWLSGVAITPKVDVYSFGMVLLEIISGRRNLSDAYTSNHYHFDYFPVQAISKLHEGSVQNLLDPELHGDFNLEEAERVCKVACWCIQENEIDRPTMAEVVRFLEGLQEIDMPPMPRLLAAIT |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g10280 | LOC_Os11g10280.1 | Chr11 | 5580094 | 5582565 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCTCCCCTCCACGCCTATCTCGGGCTCCTCCTCCTCCTCCTCTCAATGCACACTCCATCATGCTATGCCACAAATGACACTCTTGCGGCGGGCCAGTTGCTCGCCGTTGGCGAAAAGCTCATCTCGAGAAATGGCAAGTTCGCGCTCGGCTTCTTCAAGCCTACACTCCCTGAAGACGCTGGAAGTAAGTATAAAAACATTGCATCTCCTGGCTGGTACCTCGCCATATGGTTCAACGAGATTCCAGTTTGTACCACCGTGTGGGTTGCAAACAGGGAGAGGCCAATAACTGATCACGAGCTTAATCTAGCACAGCTGAAATTCTCACAAGATGGCAGTAGCCTTGCCATCATCATAAACCGTGCCACTGAATCCACAGTATGGTCCAGACAAATTGCCAATAGGACAGCACAAGCCAAAACCAGCATGAATACTAGTGCAATTCTCTTGGATAGTGGAAACCTTGTCATAGAAAGCCTATCTGATGTTTATCTGTGGCAGAGCTTTGATGACGCGACAGATCTTGTGCTTCCTGGTGCAAAGTTTGGGTGGAATAAGGTCACCGGGTTGCATCGTACCGGTATATCAAAGAAAAACCTTATTGATCCAGGTCTCGGCTCATATTTCGTCCAACTGAACGAGAGGGGTTTTATCCTGTGGCGTCGAGATCCTTACATAGAGTATTTGACCTGGTCATCGGTACAATTGACGAACATGCTCATACCGTTACATAATTCGCAACTAGAGATGAATTCACAGACCAAAGGTTTCCTTATGCCATCTTATGTTAATAATGATGAAGAGGAATACTTCATGTACCACTCATCAGACGAATTAGCTTCCTCATTTGTCTCAATAGACATGTCTGGCCAGCTCAAGTTGAGCATTTGGTCGCAAGTTAATCAATATTGGCAAGAAGTATATGCCCATCCCACTGATCCCTGCGCTTTATTTGCTGCCTGCGGACCATTCAGTTTCTGCATTGCTACTTGCGGACCTTTTGGCGTCTGCGATGGCAGTAGAAAACCATTTTGTGATTGTATGGAGGGCTTCTCTCCGAAGTCACCACAAGATTGGGAGCTCATGGATCGAACTGCGGGTTGCTTCAGAAATACACCATTAGATTGCTCTAGTAATAGGAGCTCGATAGACATGTTCCTCGCAATAGGTCGTGGCGTATTGCCCACAAATCATAAAAGAGTAGAAGATGCTACCACTCAGAGCAAATGCGAAGAAGCTTGTCTTAGAAACTGCTCTTGCATTGCTTATGCCTATGAAGATAGCACATGCTATGCCTGGCGTGGGGAACTGCTTAATTTAAGGCTACAAGATAGCATTGAAAGTCTTTCTGAAGATACTCTTTATCTTCGCCTTGCTGCAAAAGATATGCCAGCTTCAACCAAAAACAAACGAAAACCAGTTCCTGCGGCTGTTACATTAATAGCAAGCATTACTGGTTTTGGGTTATTAATGCTCTTGTTGTTGTTCTTGATTTGGCAAAACAAACTCAAGTGTTGTGGTATGCCATTACATCACACTCAAGGCAACAGCGGAATAGTAGCCTTTAGATATACTGATTTAAGTCATGCCACTAAAATCTTCTCAGAAAAGCTAGGGTCAGGTGGTTTTGGTTCTGTGTTCAAGGGAGTATTAAGTGACTCGACTACAATTGCAGTGAAACGGCTCGATGGTGATAAGAGGCTTCTTGTGTATGAGCACATGATAAATGGTTCTCTTGATGCCCACCTTTTTCATAGCAATGGTGCCGTCCTAGATTGGAGCACTAGGCATCAAATAGCCATAGGAGTTGCTAGAGGATTGTCCTACTTGCATGAGAGTTGCCATGAATGCATAATACACTGTGATATTAAGCCAGAAAATATACTTGTTGAAGCATCATTTGCTCCCAAAATTGCAGACTGTGGGATGGCGGCATTTGTGAGAAGGGATTTTAGTCGGGTTCTAACTACTTTCAGGGGAACTAAAGGGTATCTTGCCCCAGAGTGGCTTAGCGGAGTCGCTATTACTCCAAAAGTTGATGTTTACAGCTTTGGTATGGTACTGCTAGAAATCATATCAGGAAGGAGGAATTTATCCGACGCATACACAAGCAACCATTATCATTTTGATTATTTTCCTGTGCAAGCCATCAGCAAACTTCATGAGGGAAGTGTGCAGAATTTGCTTGATCCAGAATTACATGGTGATTTCAATTTGGAAGAGGCTGAAAGGGTTTGTAAAGTTGCTTGTTGGTGCATCCAAGAAAATGAAATTGATAGGCCAACAATGGCTGAAGTGGTTCGCTTTCTTGAGGGTCTGCAGGAGATTGACATGCCCCCCATGCCAAGACTACTTGCAGCCATAACTTAA
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| Protein seq | MPPLHAYLGLLLLLLSMHTPSCYATNDTLAAGQLLAVGEKLISRNGKFALGFFKPTLPEDAGSKYKNIASPGWYLAIWFNEIPVCTTVWVANRERPITDHELNLAQLKFSQDGSSLAIIINRATESTVWSRQIANRTAQAKTSMNTSAILLDSGNLVIESLSDVYLWQSFDDATDLVLPGAKFGWNKVTGLHRTGISKKNLIDPGLGSYFVQLNERGFILWRRDPYIEYLTWSSVQLTNMLIPLHNSQLEMNSQTKGFLMPSYVNNDEEEYFMYHSSDELASSFVSIDMSGQLKLSIWSQVNQYWQEVYAHPTDPCALFAACGPFSFCIATCGPFGVCDGSRKPFCDCMEGFSPKSPQDWELMDRTAGCFRNTPLDCSSNRSSIDMFLAIGRGVLPTNHKRVEDATTQSKCEEACLRNCSCIAYAYEDSTCYAWRGELLNLRLQDSIESLSEDTLYLRLAAKDMPASTKNKRKPVPAAVTLIASITGFGLLMLLLLFLIWQNKLKCCGMPLHHTQGNSGIVAFRYTDLSHATKIFSEKLGSGGFGSVFKGVLSDSTTIAVKRLDGDKRLLVYEHMINGSLDAHLFHSNGAVLDWSTRHQIAIGVARGLSYLHESCHECIIHCDIKPENILVEASFAPKIADCGMAAFVRRDFSRVLTTFRGTKGYLAPEWLSGVAITPKVDVYSFGMVLLEIISGRRNLSDAYTSNHYHFDYFPVQAISKLHEGSVQNLLDPELHGDFNLEEAERVCKVACWCIQENEIDRPTMAEVVRFLEGLQEIDMPPMPRLLAAIT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0208700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0208700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006880 | SBH | 0.023161 | 1.639232 | 0.068541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006860 | RBH | 0.243698 | 2.968808 | 2.061919 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006810 | SBH | 0.654577 | 3.109051 | 0.834232 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006790 | RBH | 0.079551 | 0.844553 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006750 | SBH | 0.000000 | 1.151413 | 4.341647 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089700 | SBH | 0.0071975 | 0.0484895 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006730 | SBH | 0.029042 | 0.089145 | 0.109641 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0110800 | SBH | 0.0472365 | 1.384266 | 0.0075685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006710 | RBH | 0.021571 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006790 | SBH | 0.027466 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006810 | SBH | 0.000000 | 3.768707 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006830 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006850 | SBH | 0.053359 | 0.568915 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006810 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006670 | SBH | 0.346137 | 1.439565 | 4.853590 |
