Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0006810 | OGI:11016700 | 8/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:5592118-5594681 | ||||||||
| Gene Symbol | SDK12, - | ||||||||||
| DNA seq | ctatatatgagacctttcggttatggctgcaagtagtcttggcatggggggcatgtcaacctcctgtagaccctcaagaaagcgaaccacttcacccattgctggcctatcaatttcatcttcttgaatgcaccaacatgcaactttacaaactctttcagcctcttccaaattgaaatcaccatgtaattctggatcaagcaaattctgcacacttccctcatgaagtttgctgatggcttgcacaggaaaataatcaaaatgataatggttgcttgtgtatgcttcagataaattccttcttcctgatatgatttctagtagtaccataccaaaactgtaaacatcaacttttggagtaatagcgactccgctaagccactctggagcaagataccctttagttcccctgaaagtagttagaacccgactaaaatcccttcccacaaatgccgccatcccaaagtctgcaattttaggagcaaatgatgcttcaagaagtatattttctggcttaatatcgcagtgtatgatgcattcatggcaactctcatgcaagtaggacaatcctctagcaactcctatggctatttgatgcctagtgttccagtctaggacagcaccattgctatgaaaaaggtgggcatcaagagaaccatttaccatgtgttcatacacaagtaacctcttatcaccttcacagcagaaaccaatcaatttgacaagatttatatgttgaatcaatccaagtgaactcacctcagccctgaattgcttttctccctgatgtgaaccatcgagccttttcaccgcaatagtagttgagtctcttaatactcccttgaacacagaaccaaaaccacctgaccccagcttttctgagaaatttttggtagcatgacttaaatcagtgtatctgaaggctattattccactgttgccttggttgtggtgtaatgttacaccacaacacttgaatttgttccgccaaatcaagaagaatagcatgagcattagtaaaccaaaaccggcaatgcttgcagcggtaacagccacaacaactggtttttgtttgtttttggtcgtagctggcatatctttggcagctaggcgaaggtaaagagtatcttcagaaagactttcaatgctgtcatgtagctttacattaaggagttcactatgccagacaaagcatgtgctatctttgtaggcataagcattgcaggagcagttactgagacaagattctgcacatttgctttgagtggtagcatcttctattctttcggggttagctggcaatgcgacccgagttattgtgtggaacatgtctgtcgagctcttgttactagggcaatctaatggcgtatttctgaagcaacctgcggttcgatccttgagctcccaatcttgaggtgacttctgagagaagctctccatacaatcacaaaataaatctgaattgccattgcatacgctaaaaggtccgcaggttgcaaatggagtgcatggatcaggaggctgtgcatatacttcttgccaagactgattagcttgtgaccaaatgctcaacttgagctggccagacatgtctattgagacaaatgaggaagaggattcatctgatgaatggtacatgaagtattcctcttcgttgttgttagtataatttggggtaaggaaacctttggtctgtgcattcatttctagtagcgaattgagtaatggtatgagcatatttgtcaattggacagatgaccaggtccaatactccatgtaaggatctcgacgccacaggataatgcccctctcgttcagttgaacggaatatgggccgagacccggatcaataaggtttttctttgatataccagtacgatgcaacctggtgaccttattccacccaaactttgcgccaggAagcgcaagatccgttggttcatcaaagctctgccacagataaacatcagggatgctttctatgacaagatttccactgtccaagagaattgcactagtgttcatgctggttttagcttgtgatgtcctattggcaatttgtctggaccatactgtgtattcagtagcacggtttatgatgatggcaaggctactgccattttgtgagaatttcagctgtgttagcttgatctctagatcagtgattggcctctccctattagcaacccacacggtggtacaaaccgggatcttgttgaaccatatggcaaggtaccatccaggagaggtgatgttgccatacttacttgcaatgccttcagggagtgccggcttgtagaagccgagcgcgaacttgccgttcctcgagacgagcttctccccgacggcgagcacctgccccgccgcgagggtatcattcgccgcggcggagcatgatggattgtgcaaggagaagaggaggaggaggaagaacccgagatgggtgtggagtggagacatggaaatgttggagaaagtagcagaggatggattggagaggcagcagcatggatgtgtgagaagtaggtgttgttgggacttgggagtgtgtggtgatatataca
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| CDS seq | atgtctccactccacacccatctcgggttcttcctcctcctcctcttctccttgcacaatccatcatgctccgccgcggcgaatgataccctcgcggcggggcaggtgctcgccgtcggggagaagctcgtctcgaggaacggcaagttcgcgctcggcttctacaagccggcactccctgaaggcattgcaagtaagtatggcaacatcacctctcctggatggtaccttgccatatggttcaacaagatcccggtttgtaccaccgtgtgggttgctaatagggagaggccaatcactgatctagagatcaagctaacacagctgaaattctcacaaaatggcagtagccttgccatcatcataaaccgtgctactgaatacacagtatggtccagacaaattgccaataggacatcacaagctaaaaccagcatgaacactagtgcaattctcttggacagtggaaatcttgtcatagaaagcatccctgatgtttatctgtggcagagctttgatgaaccaacggatcttgcgctTcctggcgcaaagtttgggtggaataaggtcaccaggttgcatcgtactggtatatcaaagaaaaaccttattgatccgggtctcggcccatattccgttcaactgaacgagaggggcattatcctgtggcgtcgagatccttacatggagtattggacctggtcatctgtccaattgacaaatatgctcataccattactcaattcgctactagaaatgaatgcacagaccaaaggtttccttaccccaaattatactaacaacaacgaagaggaatacttcatgtaccattcatcagatgaatcctcttcctcatttgtctcaatagacatgtctggccagctcaagttgagcatttggtcacaagctaatcagtcttggcaagaagtatatgcacagcctcctgatccatgcactccatttgcaacctgcggaccttttagcgtatgcaatggcaattcagatttattttgtgattgtatggagagcttctctcagaagtcacctcaagattgggagctcaaggatcgaaccgcaggttgcttcagaaatacgccattagattgccctagtaacaagagctcgacagacatgttccacacaataactcgggtcgcattgccagctaaccccgaaagaatagaagatgctaccactcaaagcaaatgtgcagaatcttgtctcagtaactgctcctgcaatgcttatgcctacaaagatagcacatgctttgtctggcatagtgaactccttaatgtaaagctacatgacagcattgaaagtctttctgaagatactctttaccttcgcctagctgccaaagatatgccagctacgaccaaaaacaaacaaaaaccagttgttgtggctgttaccgctgcaagcattgccggttttggtttactaatgctcatgctattcttcttgatttggcggaacaaattcaagtgttgtggtgtaacattacaccacaaccaaggcaacagtggaataatagccttcagatacactgatttaagtcatgctaccaaaaatttctcagaaaagctggggtcaggtggttttggttctgtgttcaagggagtattaagagactcaactactattgcggtgaaaaggctcgatggttcacatcagggagaaaagcaattcagggctgagactttgggatggcggcatttgtgggaagggattttagtcgggggaactaaagggtatcttgctccagagtggcttagcggagtcgctattactccaaaagttgatgtttacagttttggtatggtactactagaaatcatatcaggaagaaggaatttatctgaagcatacacaagcaaccattatcattttgattattttcctgtgcaagccatcagcaaacttcatgagggaagtgtgcagaatttgcttgatccagaattacatggtgatttcaatttggaagaggctgaaagagtttgtaaagttgcatgttggtgcattcaagaagatgaaattgataggccagcaatgggtgaagtggttcgctttcttgagggtctacaggaggttgacatgccccccatgccaagactacttgcagccataaccgaaaggtctcatatatag
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| Protein seq | MSPLHTHLGFFLLLLFSLHNPSCSAAANDTLAAGQVLAVGEKLVSRNGKFALGFYKPALPEGIASKYGNITSPGWYLAIWFNKIPVCTTVWVANRERPITDLEIKLTQLKFSQNGSSLAIIINRATEYTVWSRQIANRTSQAKTSMNTSAILLDSGNLVIESIPDVYLWQSFDEPTDLALPGAKFGWNKVTRLHRTGISKKNLIDPGLGPYSVQLNERGIILWRRDPYMEYWTWSSVQLTNMLIPLLNSLLEMNAQTKGFLTPNYTNNNEEEYFMYHSSDESSSSFVSIDMSGQLKLSIWSQANQSWQEVYAQPPDPCTPFATCGPFSVCNGNSDLFCDCMESFSQKSPQDWELKDRTAGCFRNTPLDCPSNKSSTDMFHTITRVALPANPERIEDATTQSKCAESCLSNCSCNAYAYKDSTCFVWHSELLNVKLHDSIESLSEDTLYLRLAAKDMPATTKNKQKPVVVAVTAASIAGFGLLMLMLFFLIWRNKFKCCGVTLHHNQGNSGIIAFRYTDLSHATKNFSEKLGSGGFGSVFKGVLRDSTTIAVKRLDGSHQGEKQFRAETLGWRHLWEGILVGGTKGYLAPEWLSGVAITPKVDVYSFGMVLLEIISGRRNLSEAYTSNHYHFDYFPVQAISKLHEGSVQNLLDPELHGDFNLEEAERVCKVACWCIQEDEIDRPAMGEVVRFLEGLQEVDMPPMPRLLAAITERSHI |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0006810 | OsGoSa_11g0006810.01 | Chr11 | 5592118 | 5594681 | - | NAM | ||
| CDS seq | atgtctccactccacacccatctcgggttcttcctcctcctcctcttctccttgcacaatccatcatgctccgccgcggcgaatgataccctcgcggcggggcaggtgctcgccgtcggggagaagctcgtctcgaggaacggcaagttcgcgctcggcttctacaagccggcactccctgaaggcattgcaagtaagtatggcaacatcacctctcctggatggtaccttgccatatggttcaacaagatcccggtttgtaccaccgtgtgggttgctaatagggagaggccaatcactgatctagagatcaagctaacacagctgaaattctcacaaaatggcagtagccttgccatcatcataaaccgtgctactgaatacacagtatggtccagacaaattgccaataggacatcacaagctaaaaccagcatgaacactagtgcaattctcttggacagtggaaatcttgtcatagaaagcatccctgatgtttatctgtggcagagctttgatgaaccaacggatcttgcgctTcctggcgcaaagtttgggtggaataaggtcaccaggttgcatcgtactggtatatcaaagaaaaaccttattgatccgggtctcggcccatattccgttcaactgaacgagaggggcattatcctgtggcgtcgagatccttacatggagtattggacctggtcatctgtccaattgacaaatatgctcataccattactcaattcgctactagaaatgaatgcacagaccaaaggtttccttaccccaaattatactaacaacaacgaagaggaatacttcatgtaccattcatcagatgaatcctcttcctcatttgtctcaatagacatgtctggccagctcaagttgagcatttggtcacaagctaatcagtcttggcaagaagtatatgcacagcctcctgatccatgcactccatttgcaacctgcggaccttttagcgtatgcaatggcaattcagatttattttgtgattgtatggagagcttctctcagaagtcacctcaagattgggagctcaaggatcgaaccgcaggttgcttcagaaatacgccattagattgccctagtaacaagagctcgacagacatgttccacacaataactcgggtcgcattgccagctaaccccgaaagaatagaagatgctaccactcaaagcaaatgtgcagaatcttgtctcagtaactgctcctgcaatgcttatgcctacaaagatagcacatgctttgtctggcatagtgaactccttaatgtaaagctacatgacagcattgaaagtctttctgaagatactctttaccttcgcctagctgccaaagatatgccagctacgaccaaaaacaaacaaaaaccagttgttgtggctgttaccgctgcaagcattgccggttttggtttactaatgctcatgctattcttcttgatttggcggaacaaattcaagtgttgtggtgtaacattacaccacaaccaaggcaacagtggaataatagccttcagatacactgatttaagtcatgctaccaaaaatttctcagaaaagctggggtcaggtggttttggttctgtgttcaagggagtattaagagactcaactactattgcggtgaaaaggctcgatggttcacatcagggagaaaagcaattcagggctgagactttgggatggcggcatttgtgggaagggattttagtcgggggaactaaagggtatcttgctccagagtggcttagcggagtcgctattactccaaaagttgatgtttacagttttggtatggtactactagaaatcatatcaggaagaaggaatttatctgaagcatacacaagcaaccattatcattttgattattttcctgtgcaagccatcagcaaacttcatgagggaagtgtgcagaatttgcttgatccagaattacatggtgatttcaatttggaagaggctgaaagagtttgtaaagttgcatgttggtgcattcaagaagatgaaattgataggccagcaatgggtgaagtggttcgctttcttgagggtctacaggaggttgacatgccccccatgccaagactacttgcagccataaccgaaaggtctcatatatag
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| Protein seq | MSPLHTHLGFFLLLLFSLHNPSCSAAANDTLAAGQVLAVGEKLVSRNGKFALGFYKPALPEGIASKYGNITSPGWYLAIWFNKIPVCTTVWVANRERPITDLEIKLTQLKFSQNGSSLAIIINRATEYTVWSRQIANRTSQAKTSMNTSAILLDSGNLVIESIPDVYLWQSFDEPTDLALPGAKFGWNKVTRLHRTGISKKNLIDPGLGPYSVQLNERGIILWRRDPYMEYWTWSSVQLTNMLIPLLNSLLEMNAQTKGFLTPNYTNNNEEEYFMYHSSDESSSSFVSIDMSGQLKLSIWSQANQSWQEVYAQPPDPCTPFATCGPFSVCNGNSDLFCDCMESFSQKSPQDWELKDRTAGCFRNTPLDCPSNKSSTDMFHTITRVALPANPERIEDATTQSKCAESCLSNCSCNAYAYKDSTCFVWHSELLNVKLHDSIESLSEDTLYLRLAAKDMPATTKNKQKPVVVAVTAASIAGFGLLMLMLFFLIWRNKFKCCGVTLHHNQGNSGIIAFRYTDLSHATKNFSEKLGSGGFGSVFKGVLRDSTTIAVKRLDGSHQGEKQFRAETLGWRHLWEGILVGGTKGYLAPEWLSGVAITPKVDVYSFGMVLLEIISGRRNLSEAYTSNHYHFDYFPVQAISKLHEGSVQNLLDPELHGDFNLEEAERVCKVACWCIQEDEIDRPAMGEVVRFLEGLQEVDMPPMPRLLAAITERSHI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 3.768707 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0208800 | RBH | 0.000000 | 0.000000 | 0.251461 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10290 | RBH | 0.250858 | 0.069730 | 0.245639 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0208800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006880 | SBH | 0.023161 | 1.639232 | 0.068541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006860 | RBH | 0.243698 | 2.968808 | 2.061919 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006810 | RBH | 0.654577 | 3.109051 | 0.834232 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006790 | RBH | 0.079551 | 0.844553 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006750 | RBH | 0.000000 | 1.151413 | 4.341647 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089600 | SBH | 0.017164 | 7.2822175 | 0.017034 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006730 | RBH | 0.029042 | 0.089145 | 0.109641 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006710 | SBH | 0.021571 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006790 | SBH | 0.027466 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006830 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006850 | SBH | 0.053359 | 0.568915 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006850 | RBH | 0.0 | 0.394426 | 0.217802 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006670 | RBH | 0.346137 | 1.439565 | 4.853590 |
