Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g09460 | OGI:11008270 | 12/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:5073932-5074811 | ||||||||
| Gene Symbol | Os_F0390 | ||||||||||
| DNA seq | TTAAATGCAAACAGATTTTCTGTTAGCTCCCTTCCTGTTCCATCCAATTGACAGGTGGCTGTATGAAACAACATAGTATAAATTCAATGACTCATAATCCATGAATGATATCTTTAAATAGAAATATGCACAATATCCGCTGCTGCCCCCATTAGCACCACAACTGTCACAGGCATTATAGTCACATAAACCCCCAAATTCTTCTTTACCACAATGATCATCACAGTAAGTGAGTTCTATAGATTCCGTTAATAAAGATGGCATACTTTCCAGAACAGGAGTATTCTCCTGAGGTCCAGTTAACTCCAGTGCAACAAGACTTGGGAGAAAAATTCGTACTCGGGGATATGAATAAAATGAACAGTCAACTGCAGTCAGCCGTTTCAGGGATTCGGATGAGATTTTGCGAGCTTTAATACAGCACTTCCTCATCAATAGCTCCTTCAGTACTGGGCAGCACAAAAAATTGAGAAAGTAGTCTTTTAGCACCACACTGCAAAGGTCCAACCTCATCAAATGCTGGGAGACAAGAGCCACATCTTCCAGTTCATAGCTGTCGCTATCAATGCTTAGATGAACCTGTAGAGCTTGAGTTTCGCACAGAAGGGCATGACGAATCCATAGGTTGATACATGGATCATCCTGGCTCCAGATCGCACCGAGATTTACCTCACACGCATTCAGGCATGTGCTACGGTCACGGAGGAGCAACAGGTGGTTCACAAACCTGTTCAGTCTCCTGACTCCGCGCCGGTTGAGCGTCCTTCCCACGTTCTTCAGCCACCATGGTTTCTTGCAGTTCATGATTGCCTTTCTCTGTCGTTTCCACTTCCATGCTTCCCACATCACTAGGAATAATTGGTCCCTCGTCATCCCCCAT
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| CDS seq | ATGGGGGATGACGAGGGACCAATTATTCCTAGTGATGTGGGAAGCATGGAAGTGGAAACGACAGAGAAAGGCAATCATGAACTGCAAGAAACCATGGTGGCTGAAGAACGTGGGAAGGACGCTCAACCGGCGCGGAGTCAGGAGACTGAACAGGTTCATCTAAGCATTGATAGCGACAGCTATGAACTGGAAGATGTGGCTCTTGTCTCCCAGCATTTGATGAGGTTGGACCTTTGCAGTGTGGTGCTAAAAGACTACTTTCTCAATTTTTTGTGCTGCCCAGTACTGAAGGAGCTATTGATGAGGAAGTGCTGTATTAAAGCTCGCAAAATCTCATCCGAATCCCTGAAACGGCTGACTGCAGTTGACTGTTCATTTTATTCATATCCCCGAGTACGAATTTTTCTCCCAAGTCTTGTTGCACTGGAGTTAACTGGACCTCAGGAGAATACTCCTGTTCTGGAAAGTATGCCATCTTTATTAACGGAATCTATAGAACTCACTTACTGTGATGATCATTGTGGTAAAGAAGAATTTGGGGGTTTATGTGACTATAATGCCTGTGACAGTTGTGGTGCTAATGGGGGCAGCAGCGGATATTGTGCATATTTCTATTTAAAGATATCATTCATGGATTATGAGTCATTGAATTTATACTATGTTGTTTCATACAGCCACCTGTCAATTGGATGGAACAGGAAGGGAGCTAACAGAAAATCTGTTTGCATTTAA
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| Protein seq | MGDDEGPIIPSDVGSMEVETTEKGNHELQETMVAEERGKDAQPARSQETEQVHLSIDSDSYELEDVALVSQHLMRLDLCSVVLKDYFLNFLCCPVLKELLMRKCCIKARKISSESLKRLTAVDCSFYSYPRVRIFLPSLVALELTGPQENTPVLESMPSLLTESIELTYCDDHCGKEEFGGLCDYNACDSCGANGGSSGYCAYFYLKISFMDYESLNLYYVVSYSHLSIGWNRKGANRKSVCI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g09460 | LOC_Os11g09460.1 | Chr11 | 5073932 | 5074811 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGGATGACGAGGGACCAATTATTCCTAGTGATGTGGGAAGCATGGAAGTGGAAACGACAGAGAAAGGCAATCATGAACTGCAAGAAACCATGGTGGCTGAAGAACGTGGGAAGGACGCTCAACCGGCGCGGAGTCAGGAGACTGAACAGGTTCATCTAAGCATTGATAGCGACAGCTATGAACTGGAAGATGTGGCTCTTGTCTCCCAGCATTTGATGAGGTTGGACCTTTGCAGTGTGGTGCTAAAAGACTACTTTCTCAATTTTTTGTGCTGCCCAGTACTGAAGGAGCTATTGATGAGGAAGTGCTGTATTAAAGCTCGCAAAATCTCATCCGAATCCCTGAAACGGCTGACTGCAGTTGACTGTTCATTTTATTCATATCCCCGAGTACGAATTTTTCTCCCAAGTCTTGTTGCACTGGAGTTAACTGGACCTCAGGAGAATACTCCTGTTCTGGAAAGTATGCCATCTTTATTAACGGAATCTATAGAACTCACTTACTGTGATGATCATTGTGGTAAAGAAGAATTTGGGGGTTTATGTGACTATAATGCCTGTGACAGTTGTGGTGCTAATGGGGGCAGCAGCGGATATTGTGCATATTTCTATTTAAAGATATCATTCATGGATTATGAGTCATTGAATTTATACTATGTTGTTTCATACAGCCACCTGTCAATTGGATGGAACAGGAAGGGAGCTAACAGAAAATCTGTTTGCATTTAA
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| Protein seq | MGDDEGPIIPSDVGSMEVETTEKGNHELQETMVAEERGKDAQPARSQETEQVHLSIDSDSYELEDVALVSQHLMRLDLCSVVLKDYFLNFLCCPVLKELLMRKCCIKARKISSESLKRLTAVDCSFYSYPRVRIFLPSLVALELTGPQENTPVLESMPSLLTESIELTYCDDHCGKEEFGGLCDYNACDSCGANGGSSGYCAYFYLKISFMDYESLNLYYVVSYSHLSIGWNRKGANRKSVCI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.648038 | 1.419568 | 0.419690 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0200950 | SBH | 2.006370 | 1.305722 | 1.189251 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g09474 | SBH | 0.636405 | 0.283697 | 0.169219 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0200950 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006460 | SBH | 0.191376 | 3.567553 | 2.031024 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006450 | RBH | 0.000000 | 0.0 | 1.756122 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006460 | RBH | 1.525561 | 3.177470 | 3.715837 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006350 | RBH | 0.083764 | 0.125617 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006320 | RBH | 9.959148 | 0.000000 | 9.591835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0083300 | SBH | 2.6366925 | 3.240256 | 2.232241 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006350 | RBH | 0.310585 | 0.115562 | 0.426081 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0084800 | SBH | 2.744465 | 3.074941 | 5.580937 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006320 | RBH | 0.111302 | 0.323119 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006410 | RBH | 1.973611 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006400 | RBH | 7.798155 | 16.809404 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006410 | RBH | 0.000000 | 0.0 | 0.723068 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006430 | RBH | 0.138098 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006430 | RBH | 0.563754 | 2.382126 | 0.774043 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006370 | SBH | 0.242504 | 2.849076 | 0.510408 |
