Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g06220 | OGI:11009080 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:2971115-2974447 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACAAAATGACCCCTTTCTACAATCACAATGGCAGCGAAACGGAGTTTTGCGGAAAGGTCCCTACCGTTTTTGCAAATCATCCCGCCGCCGCCGCCTCCGGTCGGTCGCCGGGATGCAGCGCGGGCGGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGAGGTTTTCGCCATTGGCCGCCCCAGAATTTCAATAGAGCGCTGGAACAAGAGGAAATCGGCGTAAAAAAATATCAGAGGAAAACATAGAGAGGAAGGTGGTTTGACGGAGGTGTGCGTGGCCTGGGATTCTCGTCGGAGGCCACCGGATTCGAGGTTTGCTCCGGTCACTCGCCGCCGCGCGCCCCGGTGAGTCGACACCTTTAGAGCTTTGGATCTGGCTGTGTGCATGCATCGGGATTTTGCAACTAATCTGGTGATAGTATCGATAGATAGCTTGTGTACAGTTTCGTGCGAGATCTACAACTAATCTGATTGGCAATGTTCATCTTCTTTGGCTACGATCATGCTGGTCATTATGGTTTAATCTGCTTGAACTAATCCCTCTAGAAAGTATACAATTGAGTCAGGATTTGTCAGTTTTTTTTTCTATTGGCAATGTTCATCTTCTTCGGCTGGATAGTAGTATGGTATAGTAGCCACTTTTGCTTAATTAAATGATTTAAACCCATCATTCCATTAGTCCTTCGCTCTTGATAAGGCGGCGAGAACAACTTAGTGAGTTGCCACTTACTATGTTACAAGGAATTTACCTGGGGTGTAAACACTGTCAACCTCACTACAAATGGTACTGTTTGTAAGCACATTGAAAATATCTTCCTCTTGGAAGGCTGAGCACAAACTATTTTACACCTGAATGCATGTAAATTCATGTCTATTTCAAAGGAAAGAAAGGAACATAGCTGTTAAATCATATCTAATTACCTCTTCGTAAAGGAAGGAATTACAGCTTTGACAATTGACCTCATACATCAAAAGGCTGTGATCTATTCACCAATTGTCCAATTCTCACAACTACTGCAAGCTACTACCTCCATTTCATATTATAAGTCATTTTGACTTTTTTTCATGTTATATTCATGTCAAACTGGTATATGTCTCTACACCATCTCTATATAGAATAAGTGTTTCTTTTGAAAACATATTCTTTTGTATCTGCTCTTGTTAATTTGAATATTTGAAAGCAGTCAGTTAGACAGTTACTATTGCTGCTCTGTCTAGTACCATATTCATGAAAGGAACCTTTTGAAAAGAAACTAAATACTTTATAGTTCCGAGTTCTTTCTTTGTCTTACTTTTGGAAGAGAAAATTCTGGCTCAGGAAGAGCCATCTCGTGTTAAATGCTTCCAGTACCTGTTACTATTTTCTTGTAGACTTGTCTTGGTCTCTTTGCCTACTTCTTTGTAACCTTCTAGATTCTAGAAGCCTGGGTCACTTTGCAAACTCCCATTTTGACCATTTGCTTCCAAGCAGAGCTCTGGTGAGCATGGAGATTCTGATTTCTGCTGTGGCAACTGATCTTATCAGCCGGTTCATCTCTTCGGTAACACAAAATTACAGAAACCATATACATAAGGAGGATGATCGTAGGAGGCTGGAACGCATCTTGCTGAGGATGCACTCTGTTGTTGAGGAAGCAGGGGGACGCCATATCACAAATCAAGGAATGATCCTGCAGCTAAAGGGACTTGTTGAGGGATTCTACCTCGGATACTACATGCTCGACAAAATCAAGTTCCAACCCCCCGAATATGAGGTGAGTCATGAGATTCAGTCATTTGCCTTGTCTGCCTGTAACTCTGCCAAGCGCTTTCGTTTTGCTGATGCCATAAGCAAACGCACACCAGTAGCCTTTGGTAGCAGGAGCAGAACAAACCTGAAAGATGTTGTTGATGGTTTAGAAACTAAGATTGCAGATATGAGGGAATTTGTCATTCTCCTTGGTAGCCACCCTCGTCTACCACGCCAGCCTTACAGTACATATCTATACATAGATAACTGTATGTTCGGTCGCCGTATTGAGAAGGAGCAAGTCATCAATTTCTTGCTTTGCAATGATCCTCATGATCCATATGTTAGCATTCTTCCTATTATTGGCCCTCAAAGGATTGGGAAAAAAACTCTTGTGCAACATGCTTGCCTGGATGAGAGGGTGCGCGATTGCTTCTCCCATATATTTTTCTTTAAAGAAGACGATCTGAAGACCGGAGAGCTCTCGCTTAACTCCAAGGCTTCTCAAGGGAAATATTTATTTGTTATTGAGTTCATTTGGGATGTGGATGAGGCAGCTTGGACAAAATTCCAATCATATTTGCAGAATATGCCCGCTACTGGAATTAAGGTTGTAGTGATAGGTAGAACAGAGGACATTGCTAAGTTTGGTACTAGCCAACCCATCAGGGTGAAGAGGCTATCTGAAGAAGAGTACTGGTACTACTTCAAGGCACTTGCTTTTGGAAGTATGGATCCTGATGAGCATCCAAAACTAGCATCTCTGGCCATGCAGCTATCTACTGAGATGAATGGATCATTTCTTGGTGCAACTATGTTTGGTGAACTATTAAGAGCTAATCCTAACACTCAATTCTGGAAGAGAATCTTATTATTCTTAAGAGAGCTGGCACGAAAGCACTTGACTTCCTCTGGTCTACACCCTGAGGATCTTTTCGAAAGAAATATCCCTGTTGATTTGAGCAGGATAGCCGTTGTGGATGGTCAAGTTCAAGATTTCATGGTTTATGATGTTAGGGTGGCTGGCCCTGCAGAAGGTGAGCTACCAAAGCTGACGTCACGAGACATACTACTGGGTGGTGATATTCCTGTTGAAGATAAGTTTGATGTGCTGGTCTGGAGATCTCGCATTCCACCCTACTGTAACTACATAGTTACGTATGAGAAACAAAAACCGCGACGCATGGTTGGTAAGAGGAACACGATCTACCTCTGAGAATAGACAGACACAAATCTTAATCTGGGGGAAAAATTTCTAGAAAGAAATTACATTGTCTACGCTTCGACAATATAGTTTAGAAGGCTGGGTATGCCTTTCACAGATTCTAGCTACTACTGATTATTTAGTCAGTTTAGGTGAAAGGAGTATATGTGATGCTATTGTAGGTTCGGATGCCTTCTTTCTTAGAGAACTGCTATTGTATCTGTTTTTACTAGTTTGGGTATGTAAAATTCTGTTAGTTACTATTGCTACCCTACTAGCGTCATGTGTGTGACAGAATATAGTTCACAAAAGAAGCTAACTTTCTGTTCCTGAATTCTGACCATGATGTCCTGTGTATGACCAATTTAATGTACAACAATATCTGTAGTTTCAGTGCCTTC
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| CDS seq | ATGGAGATTCTGATTTCTGCTGTGGCAACTGATCTTATCAGCCGGTTCATCTCTTCGGTAACACAAAATTACAGAAACCATATACATAAGGAGGATGATCGTAGGAGGCTGGAACGCATCTTGCTGAGGATGCACTCTGTTGTTGAGGAAGCAGGGGGACGCCATATCACAAATCAAGGAATGATCCTGCAGCTAAAGGGACTTGTTGAGGGATTCTACCTCGGATACTACATGCTCGACAAAATCAAGTTCCAACCCCCCGAATATGAGGTGAGTCATGAGATTCAGTCATTTGCCTTGTCTGCCTGTAACTCTGCCAAGCGCTTTCGTTTTGCTGATGCCATAAGCAAACGCACACCAGTAGCCTTTGGTAGCAGGAGCAGAACAAACCTGAAAGATGTTGTTGATGGTTTAGAAACTAAGATTGCAGATATGAGGGAATTTGTCATTCTCCTTGGTAGCCACCCTCGTCTACCACGCCAGCCTTACAGTACATATCTATACATAGATAACTGTATGTTCGGTCGCCGTATTGAGAAGGAGCAAGTCATCAATTTCTTGCTTTGCAATGATCCTCATGATCCATATGTTAGCATTCTTCCTATTATTGGCCCTCAAAGGATTGGGAAAAAAACTCTTGTGCAACATGCTTGCCTGGATGAGAGGGTGCGCGATTGCTTCTCCCATATATTTTTCTTTAAAGAAGACGATCTGAAGACCGGAGAGCTCTCGCTTAACTCCAAGGCTTCTCAAGGGAAATATTTATTTGTTATTGAGTTCATTTGGGATGTGGATGAGGCAGCTTGGACAAAATTCCAATCATATTTGCAGAATATGCCCGCTACTGGAATTAAGGTTGTAGTGATAGGTAGAACAGAGGACATTGCTAAGTTTGGTACTAGCCAACCCATCAGGGTGAAGAGGCTATCTGAAGAAGAGTACTGGTACTACTTCAAGGCACTTGCTTTTGGAAGTATGGATCCTGATGAGCATCCAAAACTAGCATCTCTGGCCATGCAGCTATCTACTGAGATGAATGGATCATTTCTTGGTGCAACTATGTTTGGTGAACTATTAAGAGCTAATCCTAACACTCAATTCTGGAAGAGAATCTTATTATTCTTAAGAGAGCTGGCACGAAAGCACTTGACTTCCTCTGGTCTACACCCTGAGGATCTTTTCGAAAGAAATATCCCTGTTGATTTGAGCAGGATAGCCGTTGTGGATGGTCAAGTTCAAGATTTCATGGTTTATGATGTTAGGGTGGCTGGCCCTGCAGAAGGTGAGCTACCAAAGCTGACGTCACGAGACATACTACTGGGTGGTGATATTCCTGTTGAAGATAAGTTTGATGTGCTGGTCTGGAGATCTCGCATTCCACCCTACTGTAACTACATAGTTACGTATGAGAAACAAAAACCGCGACGCATGGTTGGTAAGAGGAACACGATCTACCTCTGA
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| Protein seq | MEILISAVATDLISRFISSVTQNYRNHIHKEDDRRRLERILLRMHSVVEEAGGRHITNQGMILQLKGLVEGFYLGYYMLDKIKFQPPEYEVSHEIQSFALSACNSAKRFRFADAISKRTPVAFGSRSRTNLKDVVDGLETKIADMREFVILLGSHPRLPRQPYSTYLYIDNCMFGRRIEKEQVINFLLCNDPHDPYVSILPIIGPQRIGKKTLVQHACLDERVRDCFSHIFFFKEDDLKTGELSLNSKASQGKYLFVIEFIWDVDEAAWTKFQSYLQNMPATGIKVVVIGRTEDIAKFGTSQPIRVKRLSEEEYWYYFKALAFGSMDPDEHPKLASLAMQLSTEMNGSFLGATMFGELLRANPNTQFWKRILLFLRELARKHLTSSGLHPEDLFERNIPVDLSRIAVVDGQVQDFMVYDVRVAGPAEGELPKLTSRDILLGGDIPVEDKFDVLVWRSRIPPYCNYIVTYEKQKPRRMVGKRNTIYL |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g06220 | LOC_Os11g06220.1 | Chr11 | 2971115 | 2974447 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGATTCTGATTTCTGCTGTGGCAACTGATCTTATCAGCCGGTTCATCTCTTCGGTAACACAAAATTACAGAAACCATATACATAAGGAGGATGATCGTAGGAGGCTGGAACGCATCTTGCTGAGGATGCACTCTGTTGTTGAGGAAGCAGGGGGACGCCATATCACAAATCAAGGAATGATCCTGCAGCTAAAGGGACTTGTTGAGGGATTCTACCTCGGATACTACATGCTCGACAAAATCAAGTTCCAACCCCCCGAATATGAGGTGAGTCATGAGATTCAGTCATTTGCCTTGTCTGCCTGTAACTCTGCCAAGCGCTTTCGTTTTGCTGATGCCATAAGCAAACGCACACCAGTAGCCTTTGGTAGCAGGAGCAGAACAAACCTGAAAGATGTTGTTGATGGTTTAGAAACTAAGATTGCAGATATGAGGGAATTTGTCATTCTCCTTGGTAGCCACCCTCGTCTACCACGCCAGCCTTACAGTACATATCTATACATAGATAACTGTATGTTCGGTCGCCGTATTGAGAAGGAGCAAGTCATCAATTTCTTGCTTTGCAATGATCCTCATGATCCATATGTTAGCATTCTTCCTATTATTGGCCCTCAAAGGATTGGGAAAAAAACTCTTGTGCAACATGCTTGCCTGGATGAGAGGGTGCGCGATTGCTTCTCCCATATATTTTTCTTTAAAGAAGACGATCTGAAGACCGGAGAGCTCTCGCTTAACTCCAAGGCTTCTCAAGGGAAATATTTATTTGTTATTGAGTTCATTTGGGATGTGGATGAGGCAGCTTGGACAAAATTCCAATCATATTTGCAGAATATGCCCGCTACTGGAATTAAGGTTGTAGTGATAGGTAGAACAGAGGACATTGCTAAGTTTGGTACTAGCCAACCCATCAGGGTGAAGAGGCTATCTGAAGAAGAGTACTGGTACTACTTCAAGGCACTTGCTTTTGGAAGTATGGATCCTGATGAGCATCCAAAACTAGCATCTCTGGCCATGCAGCTATCTACTGAGATGAATGGATCATTTCTTGGTGCAACTATGTTTGGTGAACTATTAAGAGCTAATCCTAACACTCAATTCTGGAAGAGAATCTTATTATTCTTAAGAGAGCTGGCACGAAAGCACTTGACTTCCTCTGGTCTACACCCTGAGGATCTTTTCGAAAGAAATATCCCTGTTGATTTGAGCAGGATAGCCGTTGTGGATGGTCAAGTTCAAGATTTCATGGTTTATGATGTTAGGGTGGCTGGCCCTGCAGAAGGTGAGCTACCAAAGCTGACGTCACGAGACATACTACTGGGTGGTGATATTCCTGTTGAAGATAAGTTTGATGTGCTGGTCTGGAGATCTCGCATTCCACCCTACTGTAACTACATAGTTACGTATGAGAAACAAAAACCGCGACGCATGGTTGGTAAGAGGAACACGATCTACCTCTGA
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| Protein seq | MEILISAVATDLISRFISSVTQNYRNHIHKEDDRRRLERILLRMHSVVEEAGGRHITNQGMILQLKGLVEGFYLGYYMLDKIKFQPPEYEVSHEIQSFALSACNSAKRFRFADAISKRTPVAFGSRSRTNLKDVVDGLETKIADMREFVILLGSHPRLPRQPYSTYLYIDNCMFGRRIEKEQVINFLLCNDPHDPYVSILPIIGPQRIGKKTLVQHACLDERVRDCFSHIFFFKEDDLKTGELSLNSKASQGKYLFVIEFIWDVDEAAWTKFQSYLQNMPATGIKVVVIGRTEDIAKFGTSQPIRVKRLSEEEYWYYFKALAFGSMDPDEHPKLASLAMQLSTEMNGSFLGATMFGELLRANPNTQFWKRILLFLRELARKHLTSSGLHPEDLFERNIPVDLSRIAVVDGQVQDFMVYDVRVAGPAEGELPKLTSRDILLGGDIPVEDKFDVLVWRSRIPPYCNYIVTYEKQKPRRMVGKRNTIYL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g06220 | LOC_Os11g06220.2 | Chr11 | 2971164 | 2974447 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGATTCTGATTTCTGCTGTGGCAACTGATCTTATCAGCCGGTTCATCTCTTCGGTAACACAAAATTACAGAAACCATATACATAAGGAGGATGATCGTAGGAGGCTGGAACGCATCTTGCTGAGGATGCACTCTGTTGTTGAGGAAGCAGGGGGACGCCATATCACAAATCAAGGAATGATCCTGCAGCTAAAGGGACTTGTTGAGGGATTCTACCTCGGATACTACATGCTCGACAAAATCAAGTTCCAACCCCCCGAATATGAGGTGAGTCATGAGATTCAGTCATTTGCCTTGTCTGCCTGTAACTCTGCCAAGCGCTTTCGTTTTGCTGATGCCATAAGCAAACGCACACCAGTAGCCTTTGGTAGCAGGAGCAGAACAAACCTGAAAGATGTTGTTGATGGTTTAGAAACTAAGATTGCAGATATGAGGGAATTTGTCATTCTCCTTGGTAGCCACCCTCGTCTACCACGCCAGCCTTACAGTACATATCTATACATAGATAACTGTATGTTCGGTCGCCGTATTGAGAAGGAGCAAGTCATCAATTTCTTGCTTTGCAATGATCCTCATGATCCATATGTTAGCATTCTTCCTATTATTGGCCCTCAAAGGATTGGGAAAAAAACTCTTGTGCAACATGCTTGCCTGGATGAGAGGGTGCGCGATTGCTTCTCCCATATATTTTTCTTTAAAGAAGACGATCTGAAGACCGGAGAGCTCTCGCTTAACTCCAAGGCTTCTCAAGGGAAATATTTATTTGTTATTGAGTTCATTTGGGATGTGGATGAGGCAGCTTGGACAAAATTCCAATCATATTTGCAGAATATGCCCGCTACTGGAATTAAGGTTGTAGTGATAGGTAGAACAGAGGACATTGCTAAGTTTGGTACTAGCCAACCCATCAGGGTGAAGAGGCTATCTGAAGAAGAGTACTGGTACTACTTCAAGGCACTTGCTTTTGGAAGTATGGATCCTGATGAGCATCCAAAACTAGCATCTCTGGCCATGCAGCTATCTACTGAGATGAATGGATCATTTCTTGGTGCAACTATGTTTGGTGAACTATTAAGAGCTAATCCTAACACTCAATTCTGGAAGAGAATCTTATTATTCTTAAGAGAGCTGGCACGAAAGCACTTGACTTCCTCTGGTCTACACCCTGAGGATCTTTTCGAAAGAAATATCCCTGTTGATTTGAGCAGGATAGCCGTTGTGGATGGTCAAGTTCAAGATTTCATGGTTTATGATGTTAGGGTGGCTGGCCCTGCAGAAGGTGAGCTACCAAAGCTGACGTCACGAGACATACTACTGGGTGGTGATATTCCTGTTGAAGATAAGTTTGATGTGCTGGTCTGGAGATCTCGCATTCCACCCTACTGTAACTACATAGTTACGTATGAGAAACAAAAACCGCGACGCATGGTTGGTAAGAGGAACACGATCTACCTCTGA
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| Protein seq | MEILISAVATDLISRFISSVTQNYRNHIHKEDDRRRLERILLRMHSVVEEAGGRHITNQGMILQLKGLVEGFYLGYYMLDKIKFQPPEYEVSHEIQSFALSACNSAKRFRFADAISKRTPVAFGSRSRTNLKDVVDGLETKIADMREFVILLGSHPRLPRQPYSTYLYIDNCMFGRRIEKEQVINFLLCNDPHDPYVSILPIIGPQRIGKKTLVQHACLDERVRDCFSHIFFFKEDDLKTGELSLNSKASQGKYLFVIEFIWDVDEAAWTKFQSYLQNMPATGIKVVVIGRTEDIAKFGTSQPIRVKRLSEEEYWYYFKALAFGSMDPDEHPKLASLAMQLSTEMNGSFLGATMFGELLRANPNTQFWKRILLFLRELARKHLTSSGLHPEDLFERNIPVDLSRIAVVDGQVQDFMVYDVRVAGPAEGELPKLTSRDILLGGDIPVEDKFDVLVWRSRIPPYCNYIVTYEKQKPRRMVGKRNTIYL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.844879 | 1.186281 | 0.326336 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0161000 | RBH | 1.182474 | 1.761847 | 1.323747 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g06234 | RBH | 0.243771 | 0.304419 | 0.085244 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0161000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004230 | SBH | 0.678331 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004310 | SBH | 0.0 | 0.0 | 0.899215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004220 | SBH | 1.473024 | 0.0 | 2.514467 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004150 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004130 | SBH | 0.0 | 0.0 | 2.690060 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0051900 | RBH | 0.84857 | 1.711899 | 0.677034 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004220 | SBH | 0.000000 | 0.0 | 0.281950 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0052200 | RBH | 1.484537 | 1.9957225 | 5.355819 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004140 | RBH | 0.039922 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004220 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004220 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004120 | SBH | 0.0 | 0.0 | 0.228124 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004240 | RBH | 0.0 | 1.522199 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004200 | RBH | 0.0 | 1.073598 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004200 | SBH | 0.0 | 9.303191 | 0.0 |
