Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g34640 | OGI:10057730 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:18459965-18462253 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGCGGAAGGCCAACGGGAAATGGAGAATGTGTGTCGACTTCACCGACCTCAACAAGGCGTGCCCCAAGGATCACTTTCCACTCTCTCGAATAGACCAACTGGTGGATTCAACAGCCGGTTGCGAGCTATTGAGCTTCCTCGACGCTTACTCTGGCTACCACCAAATCAGCATGGCAAAAGAGGACGAAGAGAAGACAGTATTCATCACGCCGTTCGGGGTATTTTGCTATGTTAAGATGCCGTTCGGACTGATGACAGCTGTGAATACTTTCCAGCGCACGGTCTAGGGCGCACTTAGCAACCAGCTTGGCAACAATGTCGAGGCTTACGTCGACGACATCGTTGTCAAAACCAAGACAGGCGACTCATTGATTGACGATCTGCGGGAAACGTTCGACAACCTCCGACGATATCGCCTCATGCTCAATCCTGAGAAGTGCACGTTCGGAGTACCGTCGGGCAAGCTGCTCGGATTCCTTGTCTCTGGCAGAGGAATAAAAGCAAACCCCGAGAAGATCAAGGCAATCGAGAACATGAAGTCGCCTACAAGACTCAAGGAGGTACAAAAGCTAACTAGATGCATGACAGCACTAAGCAGATTCGTCACTAGGATGGGAGAACGAGGACAACCTTTCTTCGCTCTGTTGAAGAAACAAGACAAATTTGTATGGACACAGGAAGCCGAAGAGGCATTCATTGCACTCAAGCGCTACCTATCAAACCCTCCTGTACTTGTTGCTCCCCAACCTAATGAAGAATTATTCCTCTATATTGCCGCCACGCCATATTCCGTTAGCACTGTCATTGTTGTCGAGAGAGAGAAATTACAACGACCAGTTTATTACGTCAGCGAAGCTCTCCACGACACAAAGACAAGATACCCACAGATCCAAAAGCTGCTTTACGCGGTCATCATGACATCAAGGAAGCTACGCCACTACTTTCAAGCCCACAGAGTCACAGTTGTCTCCTCTTTCCCTCTTGGTGAAGTTGTGAGAAACAAAGACGTTGTCGGCCGCATTGCGAAATGGGTAGTCGAGCTGAGCCAGTTTGATGTCCACTTTGTGCCACGAACAGCCATCAAGTCCCAGGTACTCGCCGACTTCGTTGCCGATTGGACTATGCCAGATAACAAATCAGACAACCAAGGCGACAATGAAACATGGACAATGGCATTCGATGGCGCACTCAACAGCCAAGGAGCAGGGGCAGGATTTATCTTGACGTCTCCTTCCAGAGATCAATTCAAGCACGCAATCCACCTCAACTTCAGGGCGACCAATAACACTGTAGAATACGAAGGACTACTCGCCGGGATACGAGCTGCAGCTACACTTGGGGCCAAGCGACTAATCGTCAAAGGGGACTCTGAGCTAGTCGCGAACCAGGTACACAAAGATTATAAATGCTCTAACTCCGAGTTATCCAAGTATCTCGCAGATGTCAGGAAACTAGAGAAAAGGTTCGATAGGATCGAGGTCCGACACGTCTACCGCAAGGACAACGTCGAGCCAGACGACCTAGCACGACGTGCGTCCAGACGAGAATCGCTCGAGCCCGGCACTTTTCTCGACATCCTGACGAAGCCATCGGTGAAAGAGGTTAGCGGCGAAGTCAGCCCGAACACCCCCGACATTAGCTCGGAGGTCACCGAGGTAGAACGCGCCGTTGCCGACATTGAAACCACAGACGATTGGCGCATCCCACTAATCAAATTCATCAGCAGCGAGGAGTTGCCCAAGGACAATACAGAGGCCGAGAAAATAACCTGTAAAGCAAAGATCTACTGTATGGTCGGCAACGATCTATACAAGAAAGCGCCAAACGGGGTACTTCTCAAATGCGTCTCGACCGACGATGGCAGACACCTCCTCCTCGACATACATGAAGGCATATGTGGGTCACATGCCGCCGGTCGGACATTGGTCGGCAAAGCTTTTTGACAAGGCTTTTTCTGGCCAACCGCCCTTAAAGATGCATGCGACATGGTCCAGCGATGTGAAGCCTGTCAATTCCACAGTAAACACACAAAGCTACCCGCGCAAGCGCTCCAGACTATCCCTCTGACTGGGCCATTCTCGTGCTGGGGGCTAGATATACTTGGGCCATTCCCACGAGGACAGGGCAGCTACAGATTCCTATTCGTGGCGATCGACAAATTCACCAAATGGATCGAAGCAGTACCCACGGGGGAAATCAAGGCCGACAACGCCATCAATTTCATCAAAGGGATATTTTGCAGATACGGATTACCACACCGCATCATAACTGATAACGGCTCCTAG
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| CDS seq | ATGGTGCGGAAGGCCAACGGGAAATGGAGAATGTGTGTCGACTTCACCGACCTCAACAAGGCGTGCCCCAAGGATCACTTTCCACTCTCTCGAATAGACCAACTGGTGGATTCAACAGCCGGTTGCGAGCTATTGAGCTTCCTCGACGCTTACTCTGGCTACCACCAAATCAGCATGGCAAAAGAGGACGAAGAGAAGACAGTATTCATCACGCCGTTCGGGGGCGCACTTAGCAACCAGCTTGGCAACAATGTCGAGGCTTACGTCGACGACATCGTTGTCAAAACCAAGACAGGCGACTCATTGATTGACGATCTGCGGGAAACGTTCGACAACCTCCGACGATATCGCCTCATGCTCAATCCTGAGAAGTGCACGTTCGGAGTACCGTCGGGCAAGCTGCTCGGATTCCTTGTCTCTGGCAGAGGAATAAAAGCAAACCCCGAGAAGATCAAGGCAATCGAGAACATGAAGTCGCCTACAAGACTCAAGGAGGTACAAAAGCTAACTAGATGCATGACAGCACTAAGCAGATTCGTCACTAGGATGGGAGAACGAGGACAACCTTTCTTCGCTCTGTTGAAGAAACAAGACAAATTTGTATGGACACAGGAAGCCGAAGAGGCATTCATTGCACTCAAGCGCTACCTATCAAACCCTCCTGTACTTGTTGCTCCCCAACCTAATGAAGAATTATTCCTCTATATTGCCGCCACGCCATATTCCGTTAGCACTGTCATTGTTGTCGAGAGAGAGAAATTACAACGACCAGTTTATTACGTCAGCGAAGCTCTCCACGACACAAAGACAAGATACCCACAGATCCAAAAGCTGCTTTACGCGGTCATCATGACATCAAGGAAGCTACGCCACTACTTTCAAGCCCACAGAGTCACAGTTGTCTCCTCTTTCCCTCTTGGTGAAGTTGTGAGAAACAAAGACGTTGTCGGCCGCATTGCGAAATGGGTAGTCGAGCTGAGCCAGTTTGATGTCCACTTTGTGCCACGAACAGCCATCAAGTCCCAGGTACTCGCCGACTTCGTTGCCGATTGGACTATGCCAGATAACAAATCAGACAACCAAGGCGACAATGAAACATGGACAATGGCATTCGATGGCGCACTCAACAGCCAAGGAGCAGGGGCAGGATTTATCTTGACGTCTCCTTCCAGAGATCAATTCAAGCACGCAATCCACCTCAACTTCAGGGCGACCAATAACACTGTAGAATACGAAGGACTACTCGCCGGGATACGAGCTGCAGCTACACTTGGGGCCAAGCGACTAATCGTCAAAGGGGACTCTGAGCTAGTCGCGAACCAGGTACACAAAGATTATAAATGCTCTAACTCCGAGTTATCCAAGTATCTCGCAGATGTCAGGAAACTAGAGAAAAGGTTCGATAGGATCGAGGTCCGACACGTCTACCGCAAGGACAACGTCGAGCCAGACGACCTAGCACGACGTGCGTCCAGACGAGAATCGCTCGAGCCCGGCACTTTTCTCGACATCCTGACGAAGCCATCGGTGAAAGAGGTTAGCGGCGAAGTCAGCCCGAACACCCCCGACATTAGCTCGGAGGTCACCGAGGTAGAACGCGCCGTTGCCGACATTGAAACCACAGACGATTGGCGCATCCCACTAATCAAATTCATCAGCAGCGAGGAGTTGCCCAAGGACAATACAGAGGCCGAGAAAATAACCTGTAAAGCAAAGATCTACTGTATGGTCGGCAACGATCTATACAAGAAAGCGCCAAACGGGCGATGTGAAGCCTGTCAATTCCACAGTAAACACACAAAGCTACCCGCGCAAGCGCTCCAGACTATCCCTCTGACTGGGCCATTCTCGTGCTGGGGGCTAGATATACTTGGGCCATTCCCACGAGGACAGGGCAGCTACAGATTCCTATTCGTGGCGATCGACAAATTCACCAAATGGATCGAAGCAGTACCCACGGGGGAAATCAAGGCCGACAACGCCATCAATTTCATCAAAGGGATATTTTGCAGATACGGATTACCACACCGCATCATAACTGATAACGGCTCCTAG
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| Protein seq | MVRKANGKWRMCVDFTDLNKACPKDHFPLSRIDQLVDSTAGCELLSFLDAYSGYHQISMAKEDEEKTVFITPFGGALSNQLGNNVEAYVDDIVVKTKTGDSLIDDLRETFDNLRRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIKANPEKIKAIENMKSPTRLKEVQKLTRCMTALSRFVTRMGERGQPFFALLKKQDKFVWTQEAEEAFIALKRYLSNPPVLVAPQPNEELFLYIAATPYSVSTVIVVEREKLQRPVYYVSEALHDTKTRYPQIQKLLYAVIMTSRKLRHYFQAHRVTVVSSFPLGEVVRNKDVVGRIAKWVVELSQFDVHFVPRTAIKSQVLADFVADWTMPDNKSDNQGDNETWTMAFDGALNSQGAGAGFILTSPSRDQFKHAIHLNFRATNNTVEYEGLLAGIRAAATLGAKRLIVKGDSELVANQVHKDYKCSNSELSKYLADVRKLEKRFDRIEVRHVYRKDNVEPDDLARRASRRESLEPGTFLDILTKPSVKEVSGEVSPNTPDISSEVTEVERAVADIETTDDWRIPLIKFISSEELPKDNTEAEKITCKAKIYCMVGNDLYKKAPNGRCEACQFHSKHTKLPAQALQTIPLTGPFSCWGLDILGPFPRGQGSYRFLFVAIDKFTKWIEAVPTGEIKADNAINFIKGIFCRYGLPHRIITDNGS |
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| Function | Retrovirus-related Pol polyprotein from transposon 17.6 [UniProtKB/Swiss-Prot:P04323] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g34640 | LOC_Os10g34640.1 | Chr10 | 18459965 | 18462253 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGCGGAAGGCCAACGGGAAATGGAGAATGTGTGTCGACTTCACCGACCTCAACAAGGCGTGCCCCAAGGATCACTTTCCACTCTCTCGAATAGACCAACTGGTGGATTCAACAGCCGGTTGCGAGCTATTGAGCTTCCTCGACGCTTACTCTGGCTACCACCAAATCAGCATGGCAAAAGAGGACGAAGAGAAGACAGTATTCATCACGCCGTTCGGGGGCGCACTTAGCAACCAGCTTGGCAACAATGTCGAGGCTTACGTCGACGACATCGTTGTCAAAACCAAGACAGGCGACTCATTGATTGACGATCTGCGGGAAACGTTCGACAACCTCCGACGATATCGCCTCATGCTCAATCCTGAGAAGTGCACGTTCGGAGTACCGTCGGGCAAGCTGCTCGGATTCCTTGTCTCTGGCAGAGGAATAAAAGCAAACCCCGAGAAGATCAAGGCAATCGAGAACATGAAGTCGCCTACAAGACTCAAGGAGGTACAAAAGCTAACTAGATGCATGACAGCACTAAGCAGATTCGTCACTAGGATGGGAGAACGAGGACAACCTTTCTTCGCTCTGTTGAAGAAACAAGACAAATTTGTATGGACACAGGAAGCCGAAGAGGCATTCATTGCACTCAAGCGCTACCTATCAAACCCTCCTGTACTTGTTGCTCCCCAACCTAATGAAGAATTATTCCTCTATATTGCCGCCACGCCATATTCCGTTAGCACTGTCATTGTTGTCGAGAGAGAGAAATTACAACGACCAGTTTATTACGTCAGCGAAGCTCTCCACGACACAAAGACAAGATACCCACAGATCCAAAAGCTGCTTTACGCGGTCATCATGACATCAAGGAAGCTACGCCACTACTTTCAAGCCCACAGAGTCACAGTTGTCTCCTCTTTCCCTCTTGGTGAAGTTGTGAGAAACAAAGACGTTGTCGGCCGCATTGCGAAATGGGTAGTCGAGCTGAGCCAGTTTGATGTCCACTTTGTGCCACGAACAGCCATCAAGTCCCAGGTACTCGCCGACTTCGTTGCCGATTGGACTATGCCAGATAACAAATCAGACAACCAAGGCGACAATGAAACATGGACAATGGCATTCGATGGCGCACTCAACAGCCAAGGAGCAGGGGCAGGATTTATCTTGACGTCTCCTTCCAGAGATCAATTCAAGCACGCAATCCACCTCAACTTCAGGGCGACCAATAACACTGTAGAATACGAAGGACTACTCGCCGGGATACGAGCTGCAGCTACACTTGGGGCCAAGCGACTAATCGTCAAAGGGGACTCTGAGCTAGTCGCGAACCAGGTACACAAAGATTATAAATGCTCTAACTCCGAGTTATCCAAGTATCTCGCAGATGTCAGGAAACTAGAGAAAAGGTTCGATAGGATCGAGGTCCGACACGTCTACCGCAAGGACAACGTCGAGCCAGACGACCTAGCACGACGTGCGTCCAGACGAGAATCGCTCGAGCCCGGCACTTTTCTCGACATCCTGACGAAGCCATCGGTGAAAGAGGTTAGCGGCGAAGTCAGCCCGAACACCCCCGACATTAGCTCGGAGGTCACCGAGGTAGAACGCGCCGTTGCCGACATTGAAACCACAGACGATTGGCGCATCCCACTAATCAAATTCATCAGCAGCGAGGAGTTGCCCAAGGACAATACAGAGGCCGAGAAAATAACCTGTAAAGCAAAGATCTACTGTATGGTCGGCAACGATCTATACAAGAAAGCGCCAAACGGGCGATGTGAAGCCTGTCAATTCCACAGTAAACACACAAAGCTACCCGCGCAAGCGCTCCAGACTATCCCTCTGACTGGGCCATTCTCGTGCTGGGGGCTAGATATACTTGGGCCATTCCCACGAGGACAGGGCAGCTACAGATTCCTATTCGTGGCGATCGACAAATTCACCAAATGGATCGAAGCAGTACCCACGGGGGAAATCAAGGCCGACAACGCCATCAATTTCATCAAAGGGATATTTTGCAGATACGGATTACCACACCGCATCATAACTGATAACGGCTCCTAG
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| Protein seq | MVRKANGKWRMCVDFTDLNKACPKDHFPLSRIDQLVDSTAGCELLSFLDAYSGYHQISMAKEDEEKTVFITPFGGALSNQLGNNVEAYVDDIVVKTKTGDSLIDDLRETFDNLRRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIKANPEKIKAIENMKSPTRLKEVQKLTRCMTALSRFVTRMGERGQPFFALLKKQDKFVWTQEAEEAFIALKRYLSNPPVLVAPQPNEELFLYIAATPYSVSTVIVVEREKLQRPVYYVSEALHDTKTRYPQIQKLLYAVIMTSRKLRHYFQAHRVTVVSSFPLGEVVRNKDVVGRIAKWVVELSQFDVHFVPRTAIKSQVLADFVADWTMPDNKSDNQGDNETWTMAFDGALNSQGAGAGFILTSPSRDQFKHAIHLNFRATNNTVEYEGLLAGIRAAATLGAKRLIVKGDSELVANQVHKDYKCSNSELSKYLADVRKLEKRFDRIEVRHVYRKDNVEPDDLARRASRRESLEPGTFLDILTKPSVKEVSGEVSPNTPDISSEVTEVERAVADIETTDDWRIPLIKFISSEELPKDNTEAEKITCKAKIYCMVGNDLYKKAPNGRCEACQFHSKHTKLPAQALQTIPLTGPFSCWGLDILGPFPRGQGSYRFLFVAIDKFTKWIEAVPTGEIKADNAINFIKGIFCRYGLPHRIITDNGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0458700 | SBH | 1.999234 | 0.000000 | 3.969712 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25590 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0458700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0013360 | SBH | 0.818101 | 10.163983 | 6.844480 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0013580 | SBH | 0.143858 | 2.408525 | 2.659666 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0013150 | SBH | 1.590287 | 3.720034 | 8.068151 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0013430 | SBH | 0.069149 | 0.145698 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0013350 | SBH | 4.466893 | 20.807396 | 21.681377 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0305000 | RBH | 0.006504 | 0.0179535 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0013370 | SBH | 0.269706 | 0.645614 | 1.376611 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0327600 | SBH | 0.0187425 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013080 | SBH | 0.132705 | 0.067809 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012980 | SBH | 0.672302 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0013360 | SBH | 4.616492 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013070 | SBH | 0.302272 | 0.0 | 1.758294 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0013610 | SBH | 0.367782 | 0.782545 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G013300 | SBH | 0.486661 | 0.992701 | 4.193668 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013250 | SBH | 0.000000 | 6.865494 | 6.266395 |
