Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_10g0458700 OGI:10053480 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr10:16840028-16845770
Gene Symbol -
DNA seq

CTCCGACTCCGCCGGCCCACTCGCTCACTGCGCCGCCGCTCATCGGCGCGACGCTCCGGCGGCCGGCGCTCGCGGGCTCCGAGCCGGTCGCCGCCTCCCTCTGCTCTCCTCTCCGTCGCCCTCTCCTCCAGGCCGCCCCCTCCGGTGCTCCACCGTCGCCCTCCCTCGCTCCGGCAGCTCACGCTCGGGGGCTGGCCGCCGTCGCCCTCTCCGGCAGGGTTCAGGTATCCTAATCCTCCCTAGGATCAAGGGTTCGCCGATTCCGATTGGTTGTTAAACCCAGCATCCCTTCCGCGTAGAATCCTATGAAAGTTAGGAGATCTATTCGAATGCTTGTACTGTTGTACAGCTGCACCTGCATTGGCCATTGGAGATCGAATGTAATGTGATATACTATTAGACTGACAGCAGCATTTGGTCTCAAGTGGGTTAAAATATGTGAAAGTTAGAGAAAGCCGTTTTTGTTGATATGTAACGTTTCGGGGTAGCATTTGTGCATTATTATGATGATCTGATGGAGTTTAGGCTTATTTTCCAGGGGAAAATTGAGTATTCGCTTCTCTTTTTAGGGCTTCTATTTTTAGGGGACCTTCAGGGTTTGCCCCTATTTTTGTATGAATTGAGGATTCGCACCTGTTTTCGTAAAAGTAGCTACAATAGGCTCATATCTAGGTATTTTCCCCATTTTAGTTTATTTTTTTTCTAAAACTTAAATACATATACGAAAAGACTATTGTGCACTGGTTTTTTCACATAAGGCATCTCTTATATCACTGGCCTCTGGGGAGCACTCTCTTCTGGAGATCACGCCGACAACGGTCGTGCGGGGTGACCACTAGCGTTCCTGCAGGTGCAGCTGTGCGGGTAAGTAGCAAGAGTGCCTGCTGCTGCTGTTCGTGCTGGTCTCTAACTATGCCGGCATCGTAACTGACCATTGCAATACTTATCACTTATGTAGCTACTAGAATTAGTTCTCTTGATGACACATTTGCACTGAAATGATCTTCTTCATTTGTGCTTCATCTTTTTGACAGAATTGCATTTGGTACGATGGAAGAGGGCAGCAACTATTATCTTGTCAGGAAGGGGGAGATGGTAGCTGTTTACAAATCTTTAAATGATTGCCAGGCTCAAATTTGCTCATCGGTATGTGTATTTGTACTAATGTTATTGTGATTGTACATTAAGTTTTCCTGTTTTCATCCATTTTTCTCATTTATAGTGTAAGTTTTTGGTTTTGCTGTTGTGAAATTTTTTTTTTTAAAAAAAGAACACAGTGATCCTACCTGTTGATAAGGTAAAGGATAAGTTGTTTATGCAACTTTGCACTTATCCTTGCTCCCTCAACCTCCTAACACAATTTGCGTATCTTCATGTATCAAAGGGTTAACTTTGTGGTTTGTTTTCTATATTCATTTGAATATTCATTTGTGGTTTGTTTTCTATATTCATTTGAATGGATTGTTTTTCTATCTTGCCATGTCGTTAGCTTAACTGAAGGGAGATGAAACAAGTCAACGTTAGCCCTCTTCACGTTTTCTACTAAAAAACTATCAACATTTTGGTGAATTTTACTTCTATTTTCAAATATCAAGTAAGAATTGCACAACTCCTCTGAAAACTACTTCTCCCACCGTCTGTAATACATTCTGGGATTATAAATACTGTAAATTTCATGCTTCTTTCTTTGTATATGGACAGTAACTCTTGAGATTGCTGATTTGTTTTCAAAAGGTATCTGGTCCTGCTGCAAGTGCCTACAAGGGTAACTCTTGGAGCAGAGAAAAGGAGGAATACCTCTCTTCGCGTGGGTTAAGTAATGCTACATATGTAATCAATGCAGCTGAACTTAGGGAAGATCTATTTGGTACCCTTATCCCCTGTACTTTTCAGGTAATGTGCCAACACACTTATATGTGCCTTTTCCATCTCTGGATGACATGTCGAATCTGACAAAGTTAATATAAGCTCCAATATTGTGTAATGGGATAATTTTTTTTAAAAAAAAAACTAGCTTTGTTTTTTTATTCACTCATGCTTTGTCTTCCTTTGTAGGAGATAACTGTTTCTAGTTCAAATCAATCAGCTCTAAATCATACAGGTGTCCTTAACAATACAAGATATCAGCCTGGGGCACAATCCGTGGATCTGAACTACGTAAGTTTTGCTATTGCAAGCATTCAAGATATCAGTGATAAAACCTCATCCTGCTTTATTACAGGATGCCGTGGGATCTGGTCAAGCCTCAGCTGAGCACTATAGCCAGCGTATTAACCAAGGCTACTCTGTTCGGGGACAAGCATTTAACAGGCTGGTAAGCTAAGTACCATGGTGAGACTGCGAGTGTGCGTATGTATGTGCCTAGCATGCCACTAGACATAACGAGTGAATATGAGGAAAATGAACATTATTTCTAGTTTATACTTTCCCTGGTAGCAACATTTGGCACAGGTGATGATAATGCAAATTAGGTACACACTTCATTTTCAGAGCATGTGATTAAGTGCTTCCTAACCACATGTAAATGCAGGACGGTGGCACCAGTACATACACATTTAAAGTGTATAATGTCCATTCGCGTGAGCACATAATCATGAGTTACCATGTGGCTTCCATCATGCATACACATGCATAAAGAGATTTAATTCTGTTTTTCTTTTTAATTTGAGCAGGGCATCATGTTCATGCTTATTAATATGGTATCACAATGCATATGTATGTTCTGCTGAAATGCATTTGCATGTAGTCATATGTTCCTGACAACCCTTAATAAAGGATACACTGATTCTTCAAGTTATTTTATGTTGATCCTCAAGACACTTGTTATTACTTGGAATAATATGATGGCCTTATATTGCAGGAATCAAGACCTAGTTCTTCCAGCCATTTCTCACCGAATAATCTTGATCAGAGTGGAACTGTTGATGCACAACCTCTCTCGAAACAATATGTAAAGTTTGGTCTTGTTTTGCTGATTAATTTTCTGCATCTACTACAATACTTTTGACTTATCAGATTTCTAAAGCTATAATGCATTCTTAAAAAATGTGCTATTCAAGGTGTTGTGTTAATTAAGTTCGATATTAAACAGAAAAACATATGAATGCTCAATATGCTTTTGTATTGAATGCTCTTAATCACTAGCTTCGTTTTTCTATTGTTTTGACCAGGTAGGCCTACTATCACAAACATGTTCTGCCACTAATTCATTTTTCATTAATTAACTTCTGACATCTTATCTGTAAGGAAATAACAGGTTTTTTATTTTCCAACATGAATAAGTATTACATGATTAGGATAGGAAGTTTCAAGCTTGTAGTACCTGTTGCTTCTTTATAGAAAAGATGCGTTGTGAGTGCATGGCTTTGCCCACTAAGGTTCAAATCTTGATGTCCCCACTTACACACTCAGGCTCACAGATTTACCATGGGCCTCTGCCTGTTGAACTGCGTTAAGGGGTACACGCACAAGTGTGCTGTGCTTGTGTGGTGGTGTTTGTGCATGTGCATCTTCCATGTAATCACAAAAAAATTTATCTCCTGTGTATTCTCCAAAAGAAAAAGGTGTGCTTTGCAGAATCGTTTTGATAAGGCTGTCGTATCAGTAAGACATTCTTTTAAGACTGTTAACTCCTTAATTACTATTCAACTGTGCCTATTTCTTGCATCTCTTTAGGATGCTTTACTGCAGAATCTTTTGTAAATGGATGATGAAATAATAAATTTAATAATCTATGTACTTGAGGCCATTAACCCTTAAAGTTGTTTCAATTGTGCTCAGATCCTGCATGTAAGTTTTCCACTTATTAATCCAACTGTCACATCTACAGGCAAACTGTGGAGCTAGAAATTTATGTTGCCATAGGGTTACCTCCTCACCTCACCTTGCATAGAAGTCATCTACTTGGTCATTAATACATGCTATTTTACTCGTATAAATGTTTTGCACCTTATCTGTTTTTTCAGATGGTATGCTTACTTCACTTCGATGGTGCATCGAAAGGAAATCCAGGAAAAGCGGGTGCTGGGGCTGTGCTTATGACTGAAGATGGGAGAGTGGTATACTTAAGTACTTAATGCACTTCAAAGTTTAATGGTTGGTTTTCACTTTTATTTCATGTGCTTACTTATCCTTGAAGATATCTCGACTTCGCGAGGGTCTTGGTATTGTTACCAATAATGTTGCTGAATACCGGGGCCTGATCTTAGGATTGAGATATGCTATTAGGCATGGTTTCAAGAAAATCATAGTATATGGCGACTCTCAACTAGTCTGTTATCAGGTATATTTTGTTCTTTGCTTCTTCATCACTAATCAAGTCACCTCCTTTTTATGGTTGTCTGCCTGTCCGGCATGTTGGGATTGTCATGCTGCTTGATGTGCTTTCAATTATGAAATAAGAACTAAATGTTCCTAGAAGCAAACATTTAAGATCATGTTTCAAATCAAATCATGAACAAAGCACATATAGAAACTGAAAATGATCTGCCATTCCTCTCTTTGGCATAGTCATGGGCCTCGGACCTCAGCCCAATGCCCATTACAATATAGTAAATTAAGAAAGAATTCATATAAGTATTTTTCATAGAAAGTTTTTCTCATACCGTTATCACATATTCAAACTACATATTTTAGACAAGAGTATCATTTTCTCCGCTAACAGCTTTCTCATATATTTCTCAAATAGGTGAAAGGTACATGGCAAACGAAGAACCAGAACATGATGGAACTGTGCAAGGAAGTGAGAAAGCTCAAAGAAAACTTCGTCTCATTTGAGATCAACCACATTCGACGGGTATTATTTAAACTTCCTTCCTGCATTGCATTTTTACGTTGATGATTTGATATAAGCATGAACAGTGAGACAACATTATTTTGTCTCGTTTTGCATCAGCGGCATCTCATTCTTCCTAGACCTTCACTGCATATCTGATGTTTCTGTACAGAAGTTGTCTCTAGCGTATGCTTGGTTGGGCAAGCTAAAACAACAGCTATATCTCTAAGGCACTGATACTTTTTGGTATTGCTGATTTTCTCCACTTTCTGTTTCTGCATGAAGGAATGGAATGCCGAGGCAGATCGCCAAGCAAACATAGCTATTACTCTTTCCAGTAAGATACATTTACTTGTTCTTTTTCTTTCCAATTCTCATACATGCTTTCATAACCATGAATAAAACCCATACTGCAGGTGGTGTGGTCTCTGAGGAGCGTGGCGATGGCTAGCCTTCTCCGGCTATAACCCTTCTAGATAATGGGAGTAACTAGTATATGTAGTTAACTAATTAGCAGGTGGAGACCTATATGATGGGAGTAACTAATATATGTAGCTAACTAATTAGCAACCAGAGACCTATGTTTTGCATCTTGCTGCTCTGGCCTCTGGGAGTCCAGCTTGCAGTAACCTGTTGAAGATGATCCGTGTGAAGGGTACACCTCGATGATGAACACTTGAGTTACCAGGCCTCATTTTGGAGCACTATGTGAGCTCCAGCTAGTTATTCTTGGTGTAAGCTTCACTACTTGGGCCTTCACATAGGCGTTGCCCAAGTTAGTAGACTGGCAGCGATGAACTGATTGAGTGCGATGATGCAATTGCTAGTTTGCCATGTGTTGGGTTTTGGTTTTGGGGGGCTAAGAACCAAGTTTGGCCTCTTTACCTACGAAAGCATCTGCATGTAAACTGAGCTATAAGCTCCATTTTGTCAGGCTTGTGAATGAAATTGAAAACTCCGCGGATCTTC

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CDS seq

ATGGAAGAGGGCAGCAACTATTATCTTGTCAGGAAGGGGGAGATGGTAGCTGTTTACAAATCTTTAAATGATTGCCAGGCTCAAATTTGCTCATCGGTATCTGGTCCTGCTGCAAGTGCCTACAAGGGTAACTCTTGGAGCAGAGAAAAGGAGGAATACCTCTCTTCGCGTGGGTTAAGTAATGCTACATATGTAATCAATGCAGCTGAACTTAGGGAAGATCTATTTGGTACCCTTATCCCCTGTACTTTTCAGGAGATAACTGTTTCTAGTTCAAATCAATCAGCTCTAAATCATACAGGTGTCCTTAACAATACAAGATATCAGCCTGGGGCACAATCCGTGGATCTGAACTACGATGCCGTGGGATCTGGTCAAGCCTCAGCTGAGCACTATAGCCAGCGTATTAACCAAGGCTACTCTGTTCGGGGACAAGCATTTAACAGGCTGGAATCAAGACCTAGTTCTTCCAGCCATTTCTCACCGAATAATCTTGATCAGAGTGGAACTGTTGATGCACAACCTCTCTCGAAACAATATATGGTATGCTTACTTCACTTCGATGGTGCATCGAAAGGAAATCCAGGAAAAGCGGGTGCTGGGGCTGTGCTTATGACTGAAGATGGGAGAGTGATATCTCGACTTCGCGAGGGTCTTGGTATTGTTACCAATAATGTTGCTGAATACCGGGGCCTGATCTTAGGATTGAGATATGCTATTAGGCATGGTTTCAAGAAAATCATAGTATATGGCGACTCTCAACTAGTCTGTTATCAGGTGAAAGGTACATGGCAAACGAAGAACCAGAACATGATGGAACTGTGCAAGGAAGTGAGAAAGCTCAAAGAAAACTTCGTCTCATTTGAGATCAACCACATTCGACGGGAATGGAATGCCGAGGCAGATCGCCAAGCAAACATAGCTATTACTCTTTCCAGTGGTGTGGTCTCTGAGGAGCGTGGCGATGGCTAG

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Protein seq

MEEGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSNATYVINAAELREDLFGTLIPCTFQEITVSSSNQSALNHTGVLNNTRYQPGAQSVDLNYDAVGSGQASAEHYSQRINQGYSVRGQAFNRLESRPSSSSHFSPNNLDQSGTVDAQPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHIRREWNAEADRQANIAITLSSGVVSEERGDG

Function Uncharacterized protein Mb2253c [UniProtKB/Swiss-Prot:P64956]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_10g0458700 OsNip_10t0458700-01 Chr10 16840028 16845597 + RAP2018-11-26
CDS seq

ATGGAAGAGGGCAGCAACTATTATCTTGTCAGGAAGGGGGAGATGGTAGCTGTTTACAAATCTTTAAATGATTGCCAGGCTCAAATTTGCTCATCGGTATCTGGTCCTGCTGCAAGTGCCTACAAGGGTAACTCTTGGAGCAGAGAAAAGGAGGAATACCTCTCTTCGCGTGGGTTAAGTAATGCTACATATGTAATCAATGCAGCTGAACTTAGGGAAGATCTATTTGGTACCCTTATCCCCTGTACTTTTCAGGAGATAACTGTTTCTAGTTCAAATCAATCAGCTCTAAATCATACAGGTGTCCTTAACAATACAAGATATCAGCCTGGGGCACAATCCGTGGATCTGAACTACGATGCCGTGGGATCTGGTCAAGCCTCAGCTGAGCACTATAGCCAGCGTATTAACCAAGGCTACTCTGTTCGGGGACAAGCATTTAACAGGCTGGAATCAAGACCTAGTTCTTCCAGCCATTTCTCACCGAATAATCTTGATCAGAGTGGAACTGTTGATGCACAACCTCTCTCGAAACAATATATGGTATGCTTACTTCACTTCGATGGTGCATCGAAAGGAAATCCAGGAAAAGCGGGTGCTGGGGCTGTGCTTATGACTGAAGATGGGAGAATATCTCGACTTCGCGAGGGTCTTGGTATTGTTACCAATAATGTTGCTGAATACCGGGGCCTGATCTTAGGATTGAGATATGCTATTAGGCATGGTTTCAAGAAAATCATAGTATATGGCGACTCTCAACTAGTCTGTTATCAGGTGAAAGGTACATGGCAAACGAAGAACCAGAACATGATGGAACTGTGCAAGGAAGTGAGAAAGCTCAAAGAAAACTTCGTCTCATTTGAGATCAACCACATTCGACGGGAATGGAATGCCGAGGCAGATCGCCAAGCAAACATAGCTATTACTCTTTCCAGTGGTGTGGTCTCTGAGGAGCGTGGCGATGGCTAG

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Protein seq

MEEGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSNATYVINAAELREDLFGTLIPCTFQEITVSSSNQSALNHTGVLNNTRYQPGAQSVDLNYDAVGSGQASAEHYSQRINQGYSVRGQAFNRLESRPSSSSHFSPNNLDQSGTVDAQPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRISRLREGLGIVTNNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHIRREWNAEADRQANIAITLSSGVVSEERGDG

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Gene Transcript Chromosome Start End Strand Source
OsNip_10g0458700 OsNip_10t0458700-02 Chr10 16840054 16845770 + RAP2018-11-26
CDS seq

ATGGAAGAGGGCAGCAACTATTATCTTGTCAGGAAGGGGGAGATGGTAGCTGTTTACAAATCTTTAAATGATTGCCAGGCTCAAATTTGCTCATCGGTATCTGGTCCTGCTGCAAGTGCCTACAAGGGTAACTCTTGGAGCAGAGAAAAGGAGGAATACCTCTCTTCGCGTGGGTTAAGTAATGCTACATATGTAATCAATGCAGCTGAACTTAGGGAAGATCTATTTGGTACCCTTATCCCCTGTACTTTTCAGGAGATAACTGTTTCTAGTTCAAATCAATCAGCTCTAAATCATACAGGTGTCCTTAACAATACAAGATATCAGCCTGGGGCACAATCCGTGGATCTGAACTACGATGCCGTGGGATCTGGTCAAGCCTCAGCTGAGCACTATAGCCAGCGTATTAACCAAGGCTACTCTGTTCGGGGACAAGCATTTAACAGGCTGGAATCAAGACCTAGTTCTTCCAGCCATTTCTCACCGAATAATCTTGATCAGAGTGGAACTGTTGATGCACAACCTCTCTCGAAACAATATATGGTATGCTTACTTCACTTCGATGGTGCATCGAAAGGAAATCCAGGAAAAGCGGGTGCTGGGGCTGTGCTTATGACTGAAGATGGGAGAGTGATATCTCGACTTCGCGAGGGTCTTGGTATTGTTACCAATAATGTTGCTGAATACCGGGGCCTGATCTTAGGATTGAGATATGCTATTAGGCATGGTTTCAAGAAAATCATAGTATATGGCGACTCTCAACTAGTCTGTTATCAGGTGAAAGGTACATGGCAAACGAAGAACCAGAACATGATGGAACTGTGCAAGGAAGTGAGAAAGCTCAAAGAAAACTTCGTCTCATTTGAGATCAACCACATTCGACGGGAATGGAATGCCGAGGCAGATCGCCAAGCAAACATAGCTATTACTCTTTCCAGTGGTGTGGTCTCTGAGGAGCGTGGCGATGGCTAG

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Protein seq

MEEGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSNATYVINAAELREDLFGTLIPCTFQEITVSSSNQSALNHTGVLNNTRYQPGAQSVDLNYDAVGSGQASAEHYSQRINQGYSVRGQAFNRLESRPSSSSHFSPNNLDQSGTVDAQPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHIRREWNAEADRQANIAITLSSGVVSEERGDG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr10 16844082 16844166 + OsNip_10t0458700-02 OsNip_10t0458700-02,OsNip_10t0458700-01 All

Expression

Leaf Root Panicle
FPKM 1.999234 0.000000 3.969712

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g32060 RBH 1.289191 0.000000 0.974418
Nipponbare | IRGSP 1.0 | RAP-db Os10g0458700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0013360 RBH 0.818101 10.163983 6.844480
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0013580 RBH 0.143858 2.408525 2.659666
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0013150 RBH 1.590287 3.720034 8.068151
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0013430 RBH 0.069149 0.145698 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0013350 RBH 4.466893 20.807396 21.681377
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0279100 RBH 5.4616025 21.483174 34.790911
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0013370 RBH 0.269706 0.645614 1.376611
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0300500 RBH 6.440921 20.551443 58.3316615
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0013080 RBH 0.132705 0.067809 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0012980 RBH 0.672302 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0013360 RBH 4.616492 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0013070 RBH 0.302272 0.0 1.758294
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0013610 RBH 0.367782 0.782545 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G013300 RBH 0.486661 0.992701 4.193668
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0013250 RBH 0.000000 6.865494 6.266395
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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