Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os10g03900 OGI:10005900 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr10:1770927-1773181
Gene Symbol Os_F0742
DNA seq

GATCGAGTTTCAATAAAGCTTCCATTATATAAAAAAAAAACAAATGCTTGATCCTTTTACTTTTCATATCTCAGACAGGAATTTTCATCCTAGAGCTGGCTGGCTCCAGTGTTCGATATGAACCTGAGCAGAGTTCAATCCCATTTTAACAAAAAAGTTGACAACGCCATTGACCAGGGGATCATCCGCCAAGCATTTGACTTTAACACTTGTAAGGTGCTCACATGTAAATGATCTTTCTTCAAGCTCGCCAATCATTCTTTGTGATGTTTTTCCCCAACGATGCTATATATACCAAGAAAAACAGGTAAGCTATATTCTCCTGATGACATGTGTGCTTGCTAAAAATCTTTCAAGTTGGATCAGTATACATTTAGAGGGAAAGATTTACCTTTTCAAGTTCCAGATTTAGCTTCTCCAGTATTGGTGAGTTCCGAAGAAAAACAATTAATCCATAGAAATTTGCATCCAGACACCATTGACCAAGAGTCAAGCTGACAAGATTGATGAATTTTGGATACCGTTGCAAATTGTTTTCAATTGTCAGCTGCACAATATTGAAATGACTATGTTGCAGAAGGCCATTTATAAACATGATTACCTAAATTAGAAACTTGAAAACAAAATTCAGAGCACTAACATTATGCAATAAGTATTATATTTGCGGTGCAGGTACAACTATAACTTCAACATAGCGGATCATAAAAGACCACTAGAAAAAGAAATTGCGTCAACAAAGAATCAGAATAAACAATGCTACACTTGTTTGGTCTCAATGAATCTCTTTAGCACGTGTGGATTAACAGTCAAGATGCTTCAGATGCAAGTTAATTAGGTAGCTACATCAGCTTAAACACAATGCTATGTCAAAAATTTTAAACACAACGCGAATCTATAGTGAGGTAGCAGCAGGAGTAAGACTTTCAATTGCTGAAGCATATTTATCTTATTTTTCAATTTTATATTTAATAATGTCAATTGAAGTTAAGCAATCACTTAGATTTCTGAAAAGAAGAATTTTCAGTGGCCAACCCAATATTGCAGCCACACAAGAACATGCCAGTTACCAAATGGGAAATGGTCCACTTTCATTGTGAAATCTAACAGCGAACTAAGATAATTCAGGTCTGCTTGACCAAAAGTCTTATTTATGTATAAATGAGCTGAATACAATGAAATAGATTGCATTGGATGGTTGATGGCATCAGTCATGATTTCATGACATAAGAATTGGTTATGCCACGCTTAGTTGTGCCGGTACAGGTAACTAATATAGTGGAATTGTGAAGTGTCAAGAAGAAACAGCGTGCTTAAGTTTTATTATTTTTCATATCAATACCTATATTAAGATGCATGCATATAATAAGGGCAGGGGGGATATATATCTAAGATCAATTGCAATACCTTTTTCCCATCATAATAGAAATGGCAGGTCAAATTTTTAGCAGCAGAAAGGCTCCTGAGATTTTGGCAGAAATCACTAGAGGCTTGTTCGACATGAAGTACCAGCAATGAATTCACTAGTAATGGCATGTTATTGAACACAATTGTGCCGCTCAAAGGCCACCACAAGGAAAAAATGGTAACACTCGGGGTAGAAATAGTAGTCTTGTACTTCCAGGGGAACCAAGTATCAATGATGCTCAAAACCTTCAGTGTCTGAGAGGAGATGTGTCACTATCCACAATGATGCATTCATCTAAGGAGAGATTTTCCAACGATGGGCAGCCTTTCTCGAGTTGCTTGAAGAAACCTTGCTTCATAGCAACACTAACGAAGTTGATTGCTGTGAGGAAGCGGCAAGCAAACGCAGAATAGTGGTTTAGCTCCAGTTTACCAGACAACACAACAATGTCCAGAACTCGGGCATATGCTTCTGCAAAGCGTGGCTAATCCATCTGCTCATATCTTCCGAGTTCCGAGGCCGAGGCACCTTCGATTCTGGTCAATCTGTAGAACTTGAAGCAGAAGGTGCGTATCGACGCGGCGGGGTCGCGTAGCTTCAGCACTTTGTCAAGGAAACTGTTGAACGACAACTCCATCTTTTGATCATACTTGATAAAGCCGGTTTCGTTCCGCCCAAACTCATGGATGTGGATGTTGATGCAGGGCACGGTGCGTCAGAGGTTGCGCCACCGCGACAGCACGCACGTCCGCACGGCCTGGCGCGTGGTCAGGAAGGTCATGATGTGGAGGACGATGTCGTCGGGGAGCGCGCTGAACCAGTCCTTGCCATCGGCGTGCGCCGGAGCCAT

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CDS seq

ATGGCTCCGGCGCACGCCGATGGCAAGGACTGGTTCAGCGCGCTCCCCGACGACATCGTCCTCCACATCATGACCTTCCTGACCACGCGCCAGGCCGTGCGGACTTTCCTTGACAAAGTGCTGAAGCTACGCGACCCCGCCGCGTCGATACGCACCTTCTGCTTCAAGTTCTACAGATTGACCAGAATCGAAGCCTCTAGTGATTTCTGCCAAAATCTCAGGAGCCTTTCTGCTGCTAAAAATTTGACCTGCCATTTCTATTATGATGGGAAAAAGCTGACAATTGAAAACAATTTGCAACGGTATCCAAAATTCATCAATCTTGTCAGCTTGACTCTTGGTCAATGGTGTCTGGATGCAAATTTCTATGGATTAATTGTTTTTCTTCGGAACTCACCAATACTGGAGAAGCTAAATCTGGAACTTGAAAAGCATCGTTGGGGAAAAACATCACAAAGAATGATTGGCGAGCTTGAAGAAAGATCATTTACATGTGAGCACCTTACAAGTGTTAAAGTCAAATGCTTGGCGGATGATCCCCTGGTCAATGGCGTTGTCAACTTTTTTGTTAAAATGGGATTGAACTCTGCTCAGGTTCATATCGAACACTGGAGCCAGCCAGCTCTAGGATGA

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Protein seq

MAPAHADGKDWFSALPDDIVLHIMTFLTTRQAVRTFLDKVLKLRDPAASIRTFCFKFYRLTRIEASSDFCQNLRSLSAAKNLTCHFYYDGKKLTIENNLQRYPKFINLVSLTLGQWCLDANFYGLIVFLRNSPILEKLNLELEKHRWGKTSQRMIGELEERSFTCEHLTSVKVKCLADDPLVNGVVNFFVKMGLNSAQVHIEHWSQPALG

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os10g03900 LOC_Os10g03900.1 Chr10 1770927 1773181 - MSU_osa1r7
CDS seq

ATGGCTCCGGCGCACGCCGATGGCAAGGACTGGTTCAGCGCGCTCCCCGACGACATCGTCCTCCACATCATGACCTTCCTGACCACGCGCCAGGCCGTGCGGACTTTCCTTGACAAAGTGCTGAAGCTACGCGACCCCGCCGCGTCGATACGCACCTTCTGCTTCAAGTTCTACAGATTGACCAGAATCGAAGCCTCTAGTGATTTCTGCCAAAATCTCAGGAGCCTTTCTGCTGCTAAAAATTTGACCTGCCATTTCTATTATGATGGGAAAAAGCTGACAATTGAAAACAATTTGCAACGGTATCCAAAATTCATCAATCTTGTCAGCTTGACTCTTGGTCAATGGTGTCTGGATGCAAATTTCTATGGATTAATTGTTTTTCTTCGGAACTCACCAATACTGGAGAAGCTAAATCTGGAACTTGAAAAGCATCGTTGGGGAAAAACATCACAAAGAATGATTGGCGAGCTTGAAGAAAGATCATTTACATGTGAGCACCTTACAAGTGTTAAAGTCAAATGCTTGGCGGATGATCCCCTGGTCAATGGCGTTGTCAACTTTTTTGTTAAAATGGGATTGAACTCTGCTCAGGTTCATATCGAACACTGGAGCCAGCCAGCTCTAGGATGA

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Protein seq

MAPAHADGKDWFSALPDDIVLHIMTFLTTRQAVRTFLDKVLKLRDPAASIRTFCFKFYRLTRIEASSDFCQNLRSLSAAKNLTCHFYYDGKKLTIENNLQRYPKFINLVSLTLGQWCLDANFYGLIVFLRNSPILEKLNLELEKHRWGKTSQRMIGELEERSFTCEHLTSVKVKCLADDPLVNGVVNFFVKMGLNSAQVHIEHWSQPALG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0127000 SBH 0.837057 0.604194 1.839073
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g03780 SBH 0.245913 0.266052 0.214727
Nipponbare | IRGSP 1.0 | RAP-db Os10g0127000 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0001410 SBH 0.000000 0.0 0.123771
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0001400 SBH 0.0 0.0 0.081160
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0001410 SBH 0.044360 0.0 0.986793
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0001320 RBH 0.000000 0.011466 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0001330 SBH 0.667964 0.789467 0.839396
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0031800 SBH 0.394214 1.1757945 0.7663015
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0001420 SBH 0.049247 0.031967 0.160748
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0035800 SBH 0.4959275 2.2774665 3.426845
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0001350 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0001450 SBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0001450 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0001320 SBH 0.000000 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0001660 SBH 0.000000 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G001360 SBH 0.000000 0.963509 0.293104
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0001280 SBH 0.108976 0.000000 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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