Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g03900 | OGI:10005900 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:1770927-1773181 | ||||||||
| Gene Symbol | Os_F0742 | ||||||||||
| DNA seq | GATCGAGTTTCAATAAAGCTTCCATTATATAAAAAAAAAACAAATGCTTGATCCTTTTACTTTTCATATCTCAGACAGGAATTTTCATCCTAGAGCTGGCTGGCTCCAGTGTTCGATATGAACCTGAGCAGAGTTCAATCCCATTTTAACAAAAAAGTTGACAACGCCATTGACCAGGGGATCATCCGCCAAGCATTTGACTTTAACACTTGTAAGGTGCTCACATGTAAATGATCTTTCTTCAAGCTCGCCAATCATTCTTTGTGATGTTTTTCCCCAACGATGCTATATATACCAAGAAAAACAGGTAAGCTATATTCTCCTGATGACATGTGTGCTTGCTAAAAATCTTTCAAGTTGGATCAGTATACATTTAGAGGGAAAGATTTACCTTTTCAAGTTCCAGATTTAGCTTCTCCAGTATTGGTGAGTTCCGAAGAAAAACAATTAATCCATAGAAATTTGCATCCAGACACCATTGACCAAGAGTCAAGCTGACAAGATTGATGAATTTTGGATACCGTTGCAAATTGTTTTCAATTGTCAGCTGCACAATATTGAAATGACTATGTTGCAGAAGGCCATTTATAAACATGATTACCTAAATTAGAAACTTGAAAACAAAATTCAGAGCACTAACATTATGCAATAAGTATTATATTTGCGGTGCAGGTACAACTATAACTTCAACATAGCGGATCATAAAAGACCACTAGAAAAAGAAATTGCGTCAACAAAGAATCAGAATAAACAATGCTACACTTGTTTGGTCTCAATGAATCTCTTTAGCACGTGTGGATTAACAGTCAAGATGCTTCAGATGCAAGTTAATTAGGTAGCTACATCAGCTTAAACACAATGCTATGTCAAAAATTTTAAACACAACGCGAATCTATAGTGAGGTAGCAGCAGGAGTAAGACTTTCAATTGCTGAAGCATATTTATCTTATTTTTCAATTTTATATTTAATAATGTCAATTGAAGTTAAGCAATCACTTAGATTTCTGAAAAGAAGAATTTTCAGTGGCCAACCCAATATTGCAGCCACACAAGAACATGCCAGTTACCAAATGGGAAATGGTCCACTTTCATTGTGAAATCTAACAGCGAACTAAGATAATTCAGGTCTGCTTGACCAAAAGTCTTATTTATGTATAAATGAGCTGAATACAATGAAATAGATTGCATTGGATGGTTGATGGCATCAGTCATGATTTCATGACATAAGAATTGGTTATGCCACGCTTAGTTGTGCCGGTACAGGTAACTAATATAGTGGAATTGTGAAGTGTCAAGAAGAAACAGCGTGCTTAAGTTTTATTATTTTTCATATCAATACCTATATTAAGATGCATGCATATAATAAGGGCAGGGGGGATATATATCTAAGATCAATTGCAATACCTTTTTCCCATCATAATAGAAATGGCAGGTCAAATTTTTAGCAGCAGAAAGGCTCCTGAGATTTTGGCAGAAATCACTAGAGGCTTGTTCGACATGAAGTACCAGCAATGAATTCACTAGTAATGGCATGTTATTGAACACAATTGTGCCGCTCAAAGGCCACCACAAGGAAAAAATGGTAACACTCGGGGTAGAAATAGTAGTCTTGTACTTCCAGGGGAACCAAGTATCAATGATGCTCAAAACCTTCAGTGTCTGAGAGGAGATGTGTCACTATCCACAATGATGCATTCATCTAAGGAGAGATTTTCCAACGATGGGCAGCCTTTCTCGAGTTGCTTGAAGAAACCTTGCTTCATAGCAACACTAACGAAGTTGATTGCTGTGAGGAAGCGGCAAGCAAACGCAGAATAGTGGTTTAGCTCCAGTTTACCAGACAACACAACAATGTCCAGAACTCGGGCATATGCTTCTGCAAAGCGTGGCTAATCCATCTGCTCATATCTTCCGAGTTCCGAGGCCGAGGCACCTTCGATTCTGGTCAATCTGTAGAACTTGAAGCAGAAGGTGCGTATCGACGCGGCGGGGTCGCGTAGCTTCAGCACTTTGTCAAGGAAACTGTTGAACGACAACTCCATCTTTTGATCATACTTGATAAAGCCGGTTTCGTTCCGCCCAAACTCATGGATGTGGATGTTGATGCAGGGCACGGTGCGTCAGAGGTTGCGCCACCGCGACAGCACGCACGTCCGCACGGCCTGGCGCGTGGTCAGGAAGGTCATGATGTGGAGGACGATGTCGTCGGGGAGCGCGCTGAACCAGTCCTTGCCATCGGCGTGCGCCGGAGCCAT
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| CDS seq | ATGGCTCCGGCGCACGCCGATGGCAAGGACTGGTTCAGCGCGCTCCCCGACGACATCGTCCTCCACATCATGACCTTCCTGACCACGCGCCAGGCCGTGCGGACTTTCCTTGACAAAGTGCTGAAGCTACGCGACCCCGCCGCGTCGATACGCACCTTCTGCTTCAAGTTCTACAGATTGACCAGAATCGAAGCCTCTAGTGATTTCTGCCAAAATCTCAGGAGCCTTTCTGCTGCTAAAAATTTGACCTGCCATTTCTATTATGATGGGAAAAAGCTGACAATTGAAAACAATTTGCAACGGTATCCAAAATTCATCAATCTTGTCAGCTTGACTCTTGGTCAATGGTGTCTGGATGCAAATTTCTATGGATTAATTGTTTTTCTTCGGAACTCACCAATACTGGAGAAGCTAAATCTGGAACTTGAAAAGCATCGTTGGGGAAAAACATCACAAAGAATGATTGGCGAGCTTGAAGAAAGATCATTTACATGTGAGCACCTTACAAGTGTTAAAGTCAAATGCTTGGCGGATGATCCCCTGGTCAATGGCGTTGTCAACTTTTTTGTTAAAATGGGATTGAACTCTGCTCAGGTTCATATCGAACACTGGAGCCAGCCAGCTCTAGGATGA
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| Protein seq | MAPAHADGKDWFSALPDDIVLHIMTFLTTRQAVRTFLDKVLKLRDPAASIRTFCFKFYRLTRIEASSDFCQNLRSLSAAKNLTCHFYYDGKKLTIENNLQRYPKFINLVSLTLGQWCLDANFYGLIVFLRNSPILEKLNLELEKHRWGKTSQRMIGELEERSFTCEHLTSVKVKCLADDPLVNGVVNFFVKMGLNSAQVHIEHWSQPALG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g03900 | LOC_Os10g03900.1 | Chr10 | 1770927 | 1773181 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTCCGGCGCACGCCGATGGCAAGGACTGGTTCAGCGCGCTCCCCGACGACATCGTCCTCCACATCATGACCTTCCTGACCACGCGCCAGGCCGTGCGGACTTTCCTTGACAAAGTGCTGAAGCTACGCGACCCCGCCGCGTCGATACGCACCTTCTGCTTCAAGTTCTACAGATTGACCAGAATCGAAGCCTCTAGTGATTTCTGCCAAAATCTCAGGAGCCTTTCTGCTGCTAAAAATTTGACCTGCCATTTCTATTATGATGGGAAAAAGCTGACAATTGAAAACAATTTGCAACGGTATCCAAAATTCATCAATCTTGTCAGCTTGACTCTTGGTCAATGGTGTCTGGATGCAAATTTCTATGGATTAATTGTTTTTCTTCGGAACTCACCAATACTGGAGAAGCTAAATCTGGAACTTGAAAAGCATCGTTGGGGAAAAACATCACAAAGAATGATTGGCGAGCTTGAAGAAAGATCATTTACATGTGAGCACCTTACAAGTGTTAAAGTCAAATGCTTGGCGGATGATCCCCTGGTCAATGGCGTTGTCAACTTTTTTGTTAAAATGGGATTGAACTCTGCTCAGGTTCATATCGAACACTGGAGCCAGCCAGCTCTAGGATGA
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| Protein seq | MAPAHADGKDWFSALPDDIVLHIMTFLTTRQAVRTFLDKVLKLRDPAASIRTFCFKFYRLTRIEASSDFCQNLRSLSAAKNLTCHFYYDGKKLTIENNLQRYPKFINLVSLTLGQWCLDANFYGLIVFLRNSPILEKLNLELEKHRWGKTSQRMIGELEERSFTCEHLTSVKVKCLADDPLVNGVVNFFVKMGLNSAQVHIEHWSQPALG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0127000 | SBH | 0.837057 | 0.604194 | 1.839073 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03780 | SBH | 0.245913 | 0.266052 | 0.214727 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0127000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001410 | SBH | 0.000000 | 0.0 | 0.123771 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001400 | SBH | 0.0 | 0.0 | 0.081160 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001410 | SBH | 0.044360 | 0.0 | 0.986793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001320 | RBH | 0.000000 | 0.011466 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001330 | SBH | 0.667964 | 0.789467 | 0.839396 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0031800 | SBH | 0.394214 | 1.1757945 | 0.7663015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001420 | SBH | 0.049247 | 0.031967 | 0.160748 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0035800 | SBH | 0.4959275 | 2.2774665 | 3.426845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001350 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001450 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001450 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001320 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001660 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001360 | SBH | 0.000000 | 0.963509 | 0.293104 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001280 | SBH | 0.108976 | 0.000000 | 0.000000 |
