Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g27930 | OGI:09049740 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:16973690-16975737 | ||||||||
| Gene Symbol | UBL40-1, UbL40-1, OsUbL40-1, UbL401 | ||||||||||
| DNA seq | ATATCCACATTACCGCCTCCATTTTTGCACCGGCCGCCACTAATCTGCGGGAGAGAGCGTTCGTTCGTTCGCCGGCGAGAGGGAGAGTGGCAAGATGCAGATCTTCGTGAAGACGCTCACCGGGAAGACGATCACGCTGGAGGTGGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATGCGCATTGGTCGCCATTTCTCCATCCGTTCAACTGTTGTTCTTCTTGTTGTTGCCATGTTATTGCTGATTGCTCCGTTGATCCGTACGTTCACACACCGTGCAGGTGCATATATCGCGTTTAGGCAACATATAGTGCTAGAAATCATGTCCTTTGCCCTGGTAGCGTGTAAACTGTAAGGTTTTCTCATTTTGTTTCGTGCAGTGCCCAAGTATATATATCGCACGTGAGTAGTAAGTGATAGATCGATCTGTTCATGTAGCGGTGTGTTTGTTACTGAGAAAATTAAGCAATATTATATAGCATTCTGGTTAGTCGTCTTCGTTGCGTGTTCCCTGTTGCCTTATTTAGGGCAGGTTTAGTTCCCAAACAAAATTTTTCACGCTGCTACATCGAATGTTTGGACACATGCATGCAGTATTACATGTAAAAAAATCAATTACACAGTTCGCCAGGAAATTGCAAGATGAATCTTTTAAGTCTAACTGCGCCATGATTTGACAATGTGGTGCTACAGTAAACATTTACTAATGACAGATTAATTAGGCTTAATAAATTCGTCTCGCAGTTTCCTGGCGGAATCTGTAATTTGATTTATTATTATACTACGTTTAATACTTTAAATGTGTGTCTGTATATCCGATGTGATATGCAGGGGCAAAAAAATTTTTTTTGCCAACTAATCAGGCCCTTAGTCGCTACTATTTATTTGAAACGGTGCAGATCAGCAGATCGGTCTTGTAACGGAAGAAACCAATGCTTTTCTGCACATCTAAACTGTATCTGGAGAGTTTTTTGTACTTTTGACAGTTCTAGTTTCTAGGATTATAATTGTATTACGCTTCGATTTCATGATCGCATTTTGTCTAAATTTAAAATTCTCATAACACCAAATCTGCCTGTTAGGTATCCCGCCGGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAACATTCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGCCTCCGCGGTGGCAGCAGGGGCGGCTACCCCAAGGGGATCGAGCCCAACCTCCGCGAGCTCGCGCAGAAGTACAACGAGAACAAGCTGGTTTGCCGCAGGTACATTTGCTTCGCGTCGCGCGCACTCGACCGATCGATTCATGTGCATTTACGCTTGAATCGAATGCTTTCATAAGATTGATCCTTGTGTGCTGAATCCGACGCACTGTCTTCTCCTGCAGGTGCTATGCACGCCTTCCCCTCAGGTCCACCAACTGCCGCAAGAAGAAGTGTGGCCACAGCAATGAGGTAAACCTTCATTTGCTAGGTTGCCACTTGCCATTGTTCATGTTCTTTGTTTTGATCTGCTGTTGATGACTTTATCTTATCAAGTCATATATCGGCACTTCTCACTGTGTGTTGGAATAGTTGTGATTGGCTTGATCAGTACGCTCTTGCGATGCTATGCTTTACTGTGCTCCAGTTGTGTTGCACACATCTGATGTTTCTTTTCTTCGTCTGATTTTTCAGATAAGGGCAAAGAAGAGGTTTATGTCCAAGCTTTCGAAGTGAACCACTGGAAAGCTCCGTCGTGGATCAGTTCAATCGACCGCCTTGCAGCTTTTATACCTTCTTATTAGTTACTTTGTCTCTTCATGGAGAGATGCTTATGAGATTTTGCTTTCAAGTTTCTGTTACTGGATTTTGGACAAATCTCTATGAATAAAGTTTTGGTATAAAATTTTATTTACTGCCCAGCTAAATTCTTTTGGGCTTATGTGAACGAGCATCCATACTTATCATGTTGAAAGTATGTATTCTTAAATTAACAATGGAATAACAATTAGTAT
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| CDS seq | ATGCAGATCTTCGTGAAGACGCTCACCGGGAAGACGATCACGCTGGAGGTGGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCGCCGGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAACATTCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGCCTCCGCGGTGGCAGCAGGGGCGGCTACCCCAAGGGGATCGAGCCCAACCTCCGCGAGCTCGCGCAGAAGTACAACGAGAACAAGCTGGTTTGCCGCAGGTGCTATGCACGCCTTCCCCTCAGGTCCACCAACTGCCGCAAGAAGAAGTGTGGCCACAGCAATGAGATAAGGGCAAAGAAGAGGTTTATGTCCAAGCTTTCGAAGTGA
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSRGGYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKKKCGHSNEIRAKKRFMSKLSK |
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| Function | Ubiquitin-60S ribosomal protein L40-2 [UniProtKB/Swiss-Prot:P0CH35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g27930 | LOC_Os09g27930.1 | Chr09 | 16973690 | 16975737 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATCTTCGTGAAGACGCTCACCGGGAAGACGATCACGCTGGAGGTGGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCGCCGGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAACATTCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGCCTCCGCGGTGGCAGCAGGGGCGGCTACCCCAAGGGGATCGAGCCCAACCTCCGCGAGCTCGCGCAGAAGTACAACGAGAACAAGCTGGTTTGCCGCAGGTGCTATGCACGCCTTCCCCTCAGGTCCACCAACTGCCGCAAGAAGAAGTGTGGCCACAGCAATGAGATAAGGGCAAAGAAGAGGTTTATGTCCAAGCTTTCGAAGTGA
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSRGGYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKKKCGHSNEIRAKKRFMSKLSK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0452700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53620 | SBH | 10.964654 | 11.393848 | 12.444132 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0452700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009820 | SBH | 0.189925 | 15.252475 | 6.870955 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009770 | SBH | 0.000000 | 4.837818 | 3.919382 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014830 | SBH | 1.652618 | 5.987529 | 5.752805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009780 | SBH | 0.226729 | 0.650856 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009940 | SBH | 4.248049 | 31.980186 | 23.003189 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0284000 | RBH | 0.0481135 | 0.21506 | 0.0929785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009900 | SBH | 0.470691 | 1.711796 | 2.579843 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0273200 | RBH | 0.169227 | 1.5983785 | 0.025094 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009900 | SBH | 0.285249 | 0.369912 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009680 | SBH | 0.780682 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009810 | SBH | 6.020234 | 32.396938 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009630 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009690 | SBH | 0.680269 | 7.204558 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010160 | SBH | 0.408715 | 11.749269 | 4.134317 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009950 | SBH | 0.000000 | 23.764811 | 7.378790 |
