Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g53620 | OGI:04094120 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:31962539-31965307 | ||||||||
| Gene Symbol | RUBI3, rubi3, UBQ3 | ||||||||||
| DNA seq | TCGCATAGCGAGTCGAATCGACCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGGTAACTAATCAATCACCTCGTCCTAATCCTCGAATCTCTCGTGGTGCCCGTCTAATCTCGCGATTTTGATGCTCGTGGTGGAAAGCGTAGGAGGATCCCGTGCGAGTTAGTCTCAATCTCTCAGGGTTTCGTGCGATTTTAGGGTGATCCACCTCTTAATCGAGTTACGGTTTCGTGCGATTTTAGGGTAATCCTCTTAATCTCTCATTGATTTAGGGTTTCGTGAGAATCGAGGTAGGGATCTGTGTTATTTATATCGATCTAATAGATGGATTGGTTTTGAGATTGTTCTGTCAGATGGGGATTGTTTCGATATATTACCCTAATGATGTGTCAGATGGGGATTGTTTCGATATATTACCCTAATGATGTGTCAGATGGGGATTGTTTCGATATATTACCCTAATGATGGATAATAAGAGTAGTTCACAGTTATGTTTTGATCCTGCCACATAGTTTGAGTTTTGTGATCAGATTTAGTTTTACTTATTTGTGCTTAGTTCGGATGGGATTGTTCTGATATTGTTCCAATAGATGAATAGCTCGTTAGGTTAAAATCTTTAGGTTGAGTTAGGCGACACATAGTTTATTTCCTCTGGATTTGGATTGGAATTGTGTTCTTAGTTTTTTTCCCCTGGATTTGGATTGGAATTGTGTGGAGCTGGGTTAGAGAATTACATCTGTATCGTGTACACCTACTTGAACTGTAGAGCTTGGGTTCTAAGGTCAATTTAATCTGTATTGTATCTGGCTCTTTGCCTAGTTGAACTGTAGTGCTGATGTTGTACTGTGTTTTTTTACCCGTTTTATTTGCTTTACTCGTGCAAATCAAATCTGTCAGATGCTAGAACTAGGTGGCTTTATTCTGTGTTCTTACATAGATCTGTTGTCCTGTAGTTACTTATGTCAGTTTTGTTATTATCTGAAGATATTTTTGGTTGTTGCTTGTTGATGTGGTGTGAGCTGTGAGCAGCGCTCTTATGATTAATGATGCTGTCCAATTGTAGTGTAGTATGATGTGATTGATATGTTCATCTATTTTGAGCTGACAGTACCGATATCGTAGGATCTGGTGCCAACTTATTCTCCAGCTGCTTTTTTTTACCTATGTTAATTCCAATCCTTTCTTGCCTCTTCCAGATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATCCAGAAGGAGTCCACCTTGCACCTTGTCCTCCGCCTTCGTGGAGGCATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCCGACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCAAAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGGCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCTGACTATAACATCCAGAAGGAGTCCACCTTGCACTTGGTCCTCCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCCGTGGTGGTCTCTGAGCGTGTGCTGTGGTGCAGCATTGGACTTCATTATACCTATGCCGCTCGTCTGTCATATCATCGTGTCATGGTTGTGTTGTGTTCTGGTTTAGAGTCCCTAAGTTGTGTTGATACTATTATCCATACTAGTACAATTTGCTTCACTGTGCATCGGTACCAATCGATGATATTATCATTCTACTTCTGTTAATGTTTCTGAGATGTTTGATCCGAGATGAGATTCTGTTTGTGCATTGCTCACATGGTCGTAACCGGCCACTGTTGCGCGTGCCTGTTGATCAATCTGTTTGCGCTTGACGGTTTCTGATGCTTGGAATTGGGGTGTCGATGTTGGTTTGGTTATCTATCCTGGTATGTTTGTTGATTTCATGCGCATTTCAGTCTTTACGGCTTCTGATGCTTGGAATTCTAA
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| CDS seq | ATGTTAATTCCAATCCTTTCTTGCCTCTTCCAGATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATCCAGAAGGAGTCCACCTTGCACCTTGTCCTCCGCCTTCGTGGAGGCATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCCGACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCAAAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGGCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCTGACTATAACATCCAGAAGGAGTCCACCTTGCACTTGGTCCTCCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCCGTGGTGGTCTCTGA
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| Protein seq | MLIPILSCLFQMQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL |
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| Function | Polyubiquitin 3 [UniProtKB/Swiss-Prot:Q58G87] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53620 | LOC_Os04g53620.1 | Chr04 | 31962541 | 31965307 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTAATTCCAATCCTTTCTTGCCTCTTCCAGATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATCCAGAAGGAGTCCACCTTGCACCTTGTCCTCCGCCTTCGTGGAGGCATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCCGACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCAAAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGGCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCTGACTATAACATCCAGAAGGAGTCCACCTTGCACTTGGTCCTCCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCCGTGGTGGTCTCTGA
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| Protein seq | MLIPILSCLFQMQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53620 | LOC_Os04g53620.2 | Chr04 | 31962539 | 31965307 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATCCAGAAGGAGTCCACCTTGCACCTTGTCCTCCGCCTTCGTGGAGGCATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCCGACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCAAAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGGCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCTGACTATAACATCCAGAAGGAGTCCACCTTGCACTTGGTCCTCCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCCGTGGTGGTCTCTGA
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| Protein seq | MQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53620 | LOC_Os04g53620.4 | Chr04 | 31962539 | 31965307 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATCCAGAAGGAGTCCACCTTGCACCTTGTCCTCCGCCTTCGTGGAGGCATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCCGACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCAAAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCCGTGGTGGTCTCTGA
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| Protein seq | MQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.964654 | 11.393848 | 12.444132 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0628100 | RBH | 18.763294 | 19.687611 | 56.471085 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g15370 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0628100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004771 | SBH | 23.611549 | 747.267395 | 279.629150 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026321 | SBH | 19.307150 | 171.160156 | 135.050400 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018460 | SBH | 0.0 | 14.174821 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0019010 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004741 | SBH | 152.594208 | 376.591431 | 476.852570 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0504100 | RBH | 14.725833 | 53.7685795 | 21.798005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026001 | SBH | 8.491142 | 14.054948 | 25.362541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0508200 | RBH | 94.768074 | 96.079468 | 134.9494895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | SBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015120 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015520 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018410 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018920 | SBH | 0.0 | 0.578617 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004751 | SBH | 9.700830 | 34.566254 | 65.454994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018760 | SBH | 0.0 | 0.0 | 0.0 |
