Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g40020 | OGI:08072900 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:25344705-25346660 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTGTCAATTTCAAACTCCAGAACTGGGTACCATGGCGGCGGCGCGCGCCGCCGCCGCCGTCGATGCCTACCAACACAACACCCTCATCCGCGCCGCCGCCGACCACCGCAGCCTCCTGCTCGCCTTCCGCGCCATGCTGCGGGAGGGCGTCGCGGCGGACCACTTCACCTTTCCCTTCGCCCTCAAGGCGCTCGCCCAGGCGCACCACCGCTCGCCGCCGCCGTGCGCCGCCGCAACCGCAACGGCAACCACAACGTTGGGGTGCCTCCACGCGCAGATGGTCAAATCCGGCCACGGCGCCAACGTGTACGCGGCCTCCGCCCTCGTCCACGCCTACGTCTCCCGCGCCGACGCCGCCTCCGCGCGCGCGGTGTTCGACGCCGCTCGCCACCGGAACGTGGTCACCTGGACGGCGATGATCGCGGGGCACGCCGCGGCCGGGGAGGCACGGGAGGCGGTCGCGCTTTTCAGGGAGGCCGTGGCGCGCGGGCAGGAGGTCAATGGCATCACCGTGGCGCAGGTGATGGGGGCTTGCGCTCAGAGCCGCGACCTCGAGAGCGGGAGGTGGGTTCATGCGACGCTCCGACGCTGGGGCGTCGAGCCTATCTTGCTCGACGTCGCTCTTGCCACGGCGGTACTCCATATGTATGCAAGCTGTGGCGGTCTTGATGCTGCCTTCGAAGTGTTCGATAAAATGCCTCGAAGAAATGAGGTGTCATGGAATGCAATGGCTGAGGTATGCAGTAGACATGGAAGACAGGATAAGGTTCTGGAGGTGTTTCCGGGTATGCATTCTGTTGGAATGAAGCCTGATAAGGTGACATGGCTGAGCATACTCCGCGCCTGTACATCCAAGGGAGCTGCGGGCTTAGGCCAAGGCGTGCACGCCTACATGGAGAAGACGATTGGTCATAGACATGTCGCAGTTTGCACATCGCTCATGGATATGTACTCAAAGATAGGCAATGCACGGAGTGCACTCCAGATATTTCAGTGTCTCAAAAGAAAGGATTTGATGGCATGGACAAGCATGATCATCGGCTTAGCTAAGCATGGCCATGGCAAGGATGCTGTGCAACTCTTCAACCAAATGCAGCATGGTGGTGTTGTTCCGGATCATGTTGCATTTGTAGGTGTTCTTACTGCTTGCAGCCATGCTGGGATGGTAGACGAAGCAAGAAAATACTTTGACTCCATGTGGAATCATTATGGCATCAGGCCAACAATCAAACATTATGGTTGTATGATTGATCTCTTCAGTCGTGCTGGTCGATTGGCAGAGGCTGAGGGAATGATGCAAATGATGCCTATTCAACCCAGTGTCACCATGTGGGGAAGCATGATGAATGGTTGCAAGGTACATGGCAGGGCTGATATTGCTGAGAGGGTAGGAAGGCAGGTTGCTGAGCTTAATCCTCAGTTTGGCGCAATATATGTGATAATGTCCAATATATATGCGGAGATTGGTAGGTGGCATGCAGTGGAGCACACCAGGAGATTGATGTGGCAGACTGGATTGAAGAAAATTGTAGGCTCAAGTGGCACTGAAGTGCAAATGTTGTGCTCCTGAATATAGTTTCCTCTAGCATCTGTCTATGGAACTTTTTGAAGTGAAAGGAGGAGAATTTGTTAGACGAATGTTGTAGAAATTTGACAACCATGAATGACTTAAACACAGTTCTACCAAGTGTTCAATTGTTAACTCTGTATGTTGCGTGGAAAGAAAGAGGTAAATATACCAACTGACATAATTCAATTTTGGGCTTATCCATTTCCTGAATCTAGGCACTATATAATTATTTGGTGAATTGGTAGAATATATTTTGTGGATTATTCCGTTGTTCATTAGCTAATGCCTTTCAGTTGCAATAGGAATGGAGAACAGTATAAGAATACACAGTCATCTTAAGCTTCAGAGGCACGAACAAGGAACGTATGAATTTGTGAAAAGCAAT
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| CDS seq | ATGGCGGCGGCGCGCGCCGCCGCCGCCGTCGATGCCTACCAACACAACACCCTCATCCGCGCCGCCGCCGACCACCGCAGCCTCCTGCTCGCCTTCCGCGCCATGCTGCGGGAGGGCGTCGCGGCGGACCACTTCACCTTTCCCTTCGCCCTCAAGGCGCTCGCCCAGGCGCACCACCGCTCGCCGCCGCCGTGCGCCGCCGCAACCGCAACGGCAACCACAACGTTGGGGTGCCTCCACGCGCAGATGGTCAAATCCGGCCACGGCGCCAACGTGTACGCGGCCTCCGCCCTCGTCCACGCCTACGTCTCCCGCGCCGACGCCGCCTCCGCGCGCGCGGTGTTCGACGCCGCTCGCCACCGGAACGTGGTCACCTGGACGGCGATGATCGCGGGGCACGCCGCGGCCGGGGAGGCACGGGAGGCGGTCGCGCTTTTCAGGGAGGCCGTGGCGCGCGGGCAGGAGGTCAATGGCATCACCGTGGCGCAGGTGATGGGGGCTTGCGCTCAGAGCCGCGACCTCGAGAGCGGGAGGTGGGTTCATGCGACGCTCCGACGCTGGGGCGTCGAGCCTATCTTGCTCGACGTCGCTCTTGCCACGGCGGTACTCCATATGTATGCAAGCTGTGGCGGTCTTGATGCTGCCTTCGAAGTGTTCGATAAAATGCCTCGAAGAAATGAGGTGTCATGGAATGCAATGGCTGAGGTATGCAGTAGACATGGAAGACAGGATAAGGTTCTGGAGGTGTTTCCGGGTATGCATTCTGTTGGAATGAAGCCTGATAAGGTGACATGGCTGAGCATACTCCGCGCCTGTACATCCAAGGGAGCTGCGGGCTTAGGCCAAGGCGTGCACGCCTACATGGAGAAGACGATTGGTCATAGACATGTCGCAGTTTGCACATCGCTCATGGATATGTACTCAAAGATAGGCAATGCACGGAGTGCACTCCAGATATTTCAGTGTCTCAAAAGAAAGGATTTGATGGCATGGACAAGCATGATCATCGGCTTAGCTAAGCATGGCCATGGCAAGGATGCTGTGCAACTCTTCAACCAAATGCAGCATGGTGGTGTTGTTCCGGATCATGTTGCATTTGTAGGTGTTCTTACTGCTTGCAGCCATGCTGGGATGGTAGACGAAGCAAGAAAATACTTTGACTCCATGTGGAATCATTATGGCATCAGGCCAACAATCAAACATTATGGTTGTATGATTGATCTCTTCAGTCGTGCTGGTCGATTGGCAGAGGCTGAGGGAATGATGCAAATGATGCCTATTCAACCCAGTGTCACCATGTGGGGAAGCATGATGAATGGTTGCAAGGTACATGGCAGGGCTGATATTGCTGAGAGGGTAGGAAGGCAGGTTGCTGAGCTTAATCCTCAGTTTGGCGCAATATATGTGATAATGTCCAATATATATGCGGAGATTGGTAGGTGGCATGCAGTGGAGCACACCAGGAGATTGATGTGGCAGACTGGATTGAAGAAAATTGTAGGCTCAAGTGGCACTGAAGTGCAAATGTTGTGCTCCTGA
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| Protein seq | MAAARAAAAVDAYQHNTLIRAAADHRSLLLAFRAMLREGVAADHFTFPFALKALAQAHHRSPPPCAAATATATTTLGCLHAQMVKSGHGANVYAASALVHAYVSRADAASARAVFDAARHRNVVTWTAMIAGHAAAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLESGRWVHATLRRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQDKVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIGHRHVAVCTSLMDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDHVAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLAEAEGMMQMMPIQPSVTMWGSMMNGCKVHGRADIAERVGRQVAELNPQFGAIYVIMSNIYAEIGRWHAVEHTRRLMWQTGLKKIVGSSGTEVQMLCS |
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| Function | Putative pentatricopeptide repeat-containing protein At3g05240 [UniProtKB/Swiss-Prot:Q9MA95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g40020 | LOC_Os08g40020.1 | Chr08 | 25344705 | 25346660 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCGGCGCGCGCCGCCGCCGCCGTCGATGCCTACCAACACAACACCCTCATCCGCGCCGCCGCCGACCACCGCAGCCTCCTGCTCGCCTTCCGCGCCATGCTGCGGGAGGGCGTCGCGGCGGACCACTTCACCTTTCCCTTCGCCCTCAAGGCGCTCGCCCAGGCGCACCACCGCTCGCCGCCGCCGTGCGCCGCCGCAACCGCAACGGCAACCACAACGTTGGGGTGCCTCCACGCGCAGATGGTCAAATCCGGCCACGGCGCCAACGTGTACGCGGCCTCCGCCCTCGTCCACGCCTACGTCTCCCGCGCCGACGCCGCCTCCGCGCGCGCGGTGTTCGACGCCGCTCGCCACCGGAACGTGGTCACCTGGACGGCGATGATCGCGGGGCACGCCGCGGCCGGGGAGGCACGGGAGGCGGTCGCGCTTTTCAGGGAGGCCGTGGCGCGCGGGCAGGAGGTCAATGGCATCACCGTGGCGCAGGTGATGGGGGCTTGCGCTCAGAGCCGCGACCTCGAGAGCGGGAGGTGGGTTCATGCGACGCTCCGACGCTGGGGCGTCGAGCCTATCTTGCTCGACGTCGCTCTTGCCACGGCGGTACTCCATATGTATGCAAGCTGTGGCGGTCTTGATGCTGCCTTCGAAGTGTTCGATAAAATGCCTCGAAGAAATGAGGTGTCATGGAATGCAATGGCTGAGGTATGCAGTAGACATGGAAGACAGGATAAGGTTCTGGAGGTGTTTCCGGGTATGCATTCTGTTGGAATGAAGCCTGATAAGGTGACATGGCTGAGCATACTCCGCGCCTGTACATCCAAGGGAGCTGCGGGCTTAGGCCAAGGCGTGCACGCCTACATGGAGAAGACGATTGGTCATAGACATGTCGCAGTTTGCACATCGCTCATGGATATGTACTCAAAGATAGGCAATGCACGGAGTGCACTCCAGATATTTCAGTGTCTCAAAAGAAAGGATTTGATGGCATGGACAAGCATGATCATCGGCTTAGCTAAGCATGGCCATGGCAAGGATGCTGTGCAACTCTTCAACCAAATGCAGCATGGTGGTGTTGTTCCGGATCATGTTGCATTTGTAGGTGTTCTTACTGCTTGCAGCCATGCTGGGATGGTAGACGAAGCAAGAAAATACTTTGACTCCATGTGGAATCATTATGGCATCAGGCCAACAATCAAACATTATGGTTGTATGATTGATCTCTTCAGTCGTGCTGGTCGATTGGCAGAGGCTGAGGGAATGATGCAAATGATGCCTATTCAACCCAGTGTCACCATGTGGGGAAGCATGATGAATGGTTGCAAGGTACATGGCAGGGCTGATATTGCTGAGAGGGTAGGAAGGCAGGTTGCTGAGCTTAATCCTCAGTTTGGCGCAATATATGTGATAATGTCCAATATATATGCGGAGATTGGTAGGTGGCATGCAGTGGAGCACACCAGGAGATTGATGTGGCAGACTGGATTGAAGAAAATTGTAGGCTCAAGTGGCACTGAAGTGCAAATGTTGTGCTCCTGA
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| Protein seq | MAAARAAAAVDAYQHNTLIRAAADHRSLLLAFRAMLREGVAADHFTFPFALKALAQAHHRSPPPCAAATATATTTLGCLHAQMVKSGHGANVYAASALVHAYVSRADAASARAVFDAARHRNVVTWTAMIAGHAAAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLESGRWVHATLRRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQDKVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIGHRHVAVCTSLMDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDHVAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLAEAEGMMQMMPIQPSVTMWGSMMNGCKVHGRADIAERVGRQVAELNPQFGAIYVIMSNIYAEIGRWHAVEHTRRLMWQTGLKKIVGSSGTEVQMLCS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.273198 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0511000 | RBH | 0.448794 | 0.0 | 0.182819 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29850 | RBH | 0.141064 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0511000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021780 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021670 | RBH | 0.0 | 0.0 | 0.516574 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021550 | RBH | 0.0 | 0.0 | 0.394341 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021600 | RBH | 0.623488 | 1.968105 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0405100 | RBH | 0.543362 | 0.828554 | 0.245325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021480 | RBH | 0.057627 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0467900 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021120 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020940 | RBH | 1.403056 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021790 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021140 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021280 | RBH | 0.0 | 0.522721 | 0.210642 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021450 | SBH | 0.0 | 0.0 | 0.000000 |
