Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_08g0021450 OGI:08072880 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr08:26880765-26886322
Gene Symbol -
DNA seq

atggaggccagccggccggcgcacgcgcggcatatggagagcaatgcggcacgcgccgccgccgccgccgccggcgagggagtcggagaccatgacgacgacggcgaggaggaggaggaggaggagaagtggcgggaggcgctcgccgccgcctggggccagagcagggcgaagcgggaggcgatccgggcgcgctacgccgccgtcaaggacatgatacgcggtaagtgtgcggtcgccgtcgcgcgtcgcttgctgcgtctctctctctgcttctactttgagtttctcttgatttttgtttaatctgactgatggcgatggcgattggtaccgtgtgcgaacgtgcgcgcggtaattaattaacggcagcggagaaggacggcgccgacatgcgccggctcggcgtcgccatgggcgagattgagcagcttcaccacaaaggttttggctccctgcgttcagctcatcctcctctttgcttttgctctgcgctcgtgttcattagtcattaatctagtcccctcgtgttcatgtgcccgttgtacatttcgtgtgattaatgattaatctggatgagggaaaataaaataatttgttagcaaattaatttactcttctcatgtagtcaaacttaacaaactttggcgtcaatatgcacacaatactctgagaatggctatgccaaatttgcaaaggaaatttttttttgtagcattgcgtttcactagttttcatgacatataatgagaaaaatcattgggctatatgtcgatgtagcctgtcgatcctaaatgattaagtaatttcagtcctggcctttcttagaagatgataagtttcttagttgggcacatgtatttgcgcatgcatgtgtggactgctcgaatttatggagaggaaaacaatcacttctttaattaattgtacacttgattaattaattgattgtcatttcatcatatttgcacctgaaaaaagaatctgatatgtccaacatgcgtaattgcgtattacaatgtactctatctacttgcttgttaaccaattaccagtgcaaaggccaaaggaacaagtcgcagatggtgaagctctgctggagctcgtcaattccctggccatcaccgccaaatccaagaagaaagatggacctaccccttcagagttcgtcacatcactgctgacgaagtttggtgtcagagcttctctcttggatgcttccatcgagtctttctcttgttctgatcttggcgccatggcgtctccattgttcatgacagcaactgggtgccaaacaatgtagggttctgtttcccctgtgacatgaaaatgttgcaagaattgatcgatcttttggtttgtgtgtttatgttcagttgctcatgaaattcttgtaggaatggtgctttgaatcttgccatcgaggaacggaggaagcgtgtcgctagaagaatatttgaccggtttcctagcaaacctgcaggggtgcgtttcatcattcctgcttctgaaaactttagctattcgcttctgatttaacaaatataaaagcaaggttctcgagccatttgcttaggtgaaaagattatccttatatttagtattttagTtttttttgctgacaccttattaatcagcaatggctaaagtgttcttgcagtttactgaactatttatatttgaacatgcttttgcataaatgaatgagttcaatgtgtcagatgctaactttgctcaattgcgagtaggcattggcacacctagacgtatatatgtttatcattgatcccttttcgatatgtttttttttttacttctgccatgtttaataagtttccttccaagatttgaaatcgcacttactttccagctttatgagaccacaccagatctagatgaaaggaatgatactgacaagaacatggctgtcatgttcaaactcttgaggaagaacaaatgtgtgaagctggaaaatctcatcctaaaccggcaatctttcgcacagactgtcgagaacatatttgctctctcgtttcttgtcaaggatggaagagtggagatagatgttgatgataagggaaaccattttgtcggtgagtgctcctttgatgatccaccgacacaaatttcagtttgattgttcaaattgtaaatcaaagtagtaatgctcatgaattagtagtgatttgtgtctttcatgtttgctgtgcagtgccacggaatgctccggcagctgaactgataacctcaagggaagtgatcaacagccaatatgtattccgatttgataccaaggattggaaggtaaaatacttacacatttttccctattctagatggataaatcttgagcttgatctattatttctcccatctgtatgttttctccttttctttttttttttatcattttgcaatttttgctcatttacagataatggaaggcgtcgtggagcctggagatgagctaatgcctcatagacaaaacaacattggagaacactacaataatgcaaaatcatattcagcttcagaaccacagagaaaacgagatgaatttgctcagggagagggaatggatgagacactcatcaagccttgcgctgaagatgtcatcctgaagaggaagaggagatcagaagcagagagcttgaaacattggttttcttcatgcaaatggcaatgatcatgtataattttagggttagttcactggtagcaaagcagattaagcacgcttttggcatctctgcaagaaattgtttaacaaatactaaaacacaagtaggcattaacagcttctgtttcttctattattaggacttagaagtttaatttgacaatgttggaactttcaagatcctttctgcaaatgttcttgactacccgaatcacttgagctgaccgggatttggattagaattcacgatccaattctaaatgcgcaaaattcggtagcacttacaattcgtgatccaaattcgcatgggcttgataggctctaatttataatcagaaccaaattaagataggccttactgtcgatccaaagtaggtgagcctggctggaatcgctaggagcaatttcaatagtatagccaagtactggttccaattcatctataactaatctaatagctcatttatacaatagctacatactacactattaatacctggtctcacctgtcatacacacactgcgtcaactaatctaatagctcatttatacaatagctacatactacactattaatacctggtctcacctgtcatacacacactgcgtcttggagtccgtgctacagctggctacaaatccgtagctcgctgtccgtgctacagctggctacaaatccgtagctcgctgttcttctctctcctcatttatctccttaaaacatgtttgtcgctggcttataacttgctattgtacctgctctaatattattgggcctggttgcgcatcgaatttcagtgggccagatttggtgggccgtatggagattcaatgggctgaattggatctctaccgtttatttccaccggaacactgggtgggcatgattttcttctgttttctcgttttaatttttttttctattgtcaatttcaaactccagaactgggtaccatggcggcggcgcgcgccgccgccgccgtcgatgcctaccaacacaacaccctcatccgcgccgccgccgaccaccgcagcctcctgctcgccttccgcgccatgctgcgggagggcgtcgcggcggaccacttcacctttcccttcgccctcaaggcgctcgcccaggcgcaccaccgctcgccgccgccgtgcgccgccgcaaccgcaacggcaaccacaacgttggggtgcctccacgcgcagatggtcaaatccggccacggcgccaacgtgtacgcggcctccgccctcgtccacgcctacgtctcccgcgccgacgccgcctccgcgcgcgcggtgttcgacgccgctcgccaccggaacgtggtcacctggacggcgatgatcgcggggcacgccgcggccggggaggcacgggaggcggtcgcgcttttcagggaggccgtggcgcgcgggcaggaggtcaatggcatcaccgtggcgcaggtgatgggggcttgcgctcagagccgcgacctcaagagcgggaggtgggttcatgcgacgctccgacgctggggcgtcgagcctatcttgctcgacgtcgctcttgccacggcggtactccatatgtatgcaagctgtggcggtcttgatgctgccttcgaagtgttcgataaaatgcctcgaagaaatgaggtgtcatggaatgcaatggctgaggtatgcagtagacatggaagacaggataaggttctggaggtgtttccgggtatgcattctgttggaatgaagcccgataaggtgacatggctgagcatactccgcgcctgtacatccaagggagctgcgggcttaggccaaggcgtgcacgcctacatggagaagacgattggtcatagacatgttgcagtttgcacatcgctcatggatatgtactcaaagataggcaatgcacggagtgcactccagatatttcagtgtctcaaaagaaaggatttgatggcatggacaagcatgatcatcggcttagctaagcatggccatggcaaggatgctgtgcaactcttcaaccaaatgcagcatggtggtgttgttccggatcatgttgcatttgtaggtgttcttactgcttgcagccatgctgggatggtagacgaagcaagaaaatactttgactccatgtggaatcattatggcatcaggccaacaatcaaacattatggttgtatgattgatctcttcagtcgtgctggtcgattggcagaggctgagggaatgatgcaaatgatgcctattcaacccagtgtcaccatgtggggaagcatgatgaatggttgcaaggtacatggcagggctgatattgctgagagggtaggaaagcaggttgctgagcttaatcctcagtttggcgcaatatatgtgataatgtccaatatatatgcggagattggtaggtggcatgcagtggagcacaccaggagattgatgtggcagactggattgaagaaaattgtaggctcaagtggcactgaagtgcaaatgttgtgctcctgaatatagtttcctctagcatctgtctatggaactttttgaagtgaaaggaggagaatttgttagacgaatgttgtagaaatttgacaaccatgaatgacttaaacacagttctaccaagtgttcaattgttaactctgtacgttgcgtggaaagaaagaggtaaatataccaactgacataattcaattttgggcttatccatttcctgaatctaggcgctatataattatttggtgaattggtagaatatattttgtggattattccgttgttcattagctaatgcctttcagttgcaataggaatggagaacagtataagaatacacagtcatcttaagcttcagaggcacgaacaaggaacgaatgaatttgtgaaaagcaat

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CDS seq

atggaggccagccggccggcgcacgcgcggcatatggagagcaatgcggcacgcgccgccgccgccgccgccggcgagggagtcggagaccatgacgacgacggcgaggaggaggaggaggaggagaagtggcgggaggcgctcgccgccgcctggggccagagcagggcgaagcgggaggcgatccgggcgcgctacgccgccgtcaaggacatgatacgcgcggagaaggacggcgccgacatgcgccggctcggcgtcgccatgggcgagattgagcagcttcaccacaaagtgcaaaggccaaaggaacaagtcgcagatggtgaagctctgctggagctcgtcaattccctggccatcaccgccaaatccaagaagaaagatggacctaccccttcagagttcgtcacatcactgctgacgaagtttggtgtcagagcttctctcttggatgcttccatcgagtctttctcttgttctgatcttggcgccatggcgtctccattgttcatgacagcaactgggtgccaaacaatgaatggtgctttgaatcttgccatcgaggaacggaggaagcgtgtcgctagaagaatatttgaccggtttcctagcaaacctgcagggctttatgagaccacaccagatctagatgaaaggaatgatactgacaagaacatggctgtcatgttcaaactcttgaggaagaacaaatgtgtgaagctggaaaatctcatcctaaaccggcaatctttcgcacagactgtcgagaacatatttgctctctcgtttcttgtcaaggatggaagagtggagatagatgttgatgataagggaaaccattttgtcgtgccacggaatgctccggcagctgaactgataacctcaagggaagtgatcaacagccaatatgtattccgatttgataccaaggattggaagataatggaaggcgtcgtggagcctggagatgagctaatgcctcatagacaaaacaacattggagaacactacaataatgcaaaatcatattcagcttcagaaccacagagaaaacgagatgaatttgctcagggagagggaatggatgagacactcatcaagccttgcgctgaagatgtcatcctgaagaggaagaggagatcagaagcagagagcttgaaacattgcctcctgctcgccttccgcgccatgctgcgggagggcgtcgcggcggaccacttcacctttcccttcgccctcaaggcgctcgcccaggcgcaccaccgctcgccgccgccgtgcgccgccgcaaccgcaacggcaaccacaacgttggggtgcctccacgcgcagatggtcaaatccggccacggcgccaacgtgtacgcggcctccgccctcgtccacgcctacgtctcccgcgccgacgccgcctccgcgcgcgcggtgttcgacgccgctcgccaccggaacgtggtcacctggacggcgatgatcgcggggcacgccgcggccggggaggcacgggaggcggtcgcgcttttcagggaggccgtggcgcgcgggcaggaggtcaatggcatcaccgtggcgcaggtgatgggggcttgcgctcagagccgcgacctcaagagcgggaggtgggttcatgcgacgctccgacgctggggcgtcgagcctatcttgctcgacgtcgctcttgccacggcggtactccatatgtatgcaagctgtggcggtcttgatgctgccttcgaagtgttcgataaaatgcctcgaagaaatgaggtgtcatggaatgcaatggctgaggtatgcagtagacatggaagacaggataaggttctggaggtgtttccgggtatgcattctgttggaatgaagcccgataaggtgacatggctgagcatactccgcgcctgtacatccaagggagctgcgggcttaggccaaggcgtgcacgcctacatggagaagacgattggtcatagacatgttgcagtttgcacatcgctcatggatatgtactcaaagataggcaatgcacggagtgcactccagatatttcagtgtctcaaaagaaaggatttgatggcatggacaagcatgatcatcggcttagctaagcatggccatggcaaggatgctgtgcaactcttcaaccaaatgcagcatggtggtgttgttccggatcatgttgcatttgtaggtgttcttactgcttgcagccatgctgggatggtagacgaagcaagaaaatactttgactccatgtggaatcattatggcatcaggccaacaatcaaacattatggttgtatgattgatctcttcagtcgtgctggtcgattggcagaggctgagggaatgatgcaaatgatgcctattcaacccagtgtcaccatgtggggaagcatgatgaatggttgcaaggtacatggcagggctgatattgctgagagggtaggaaagcaggttgctgagcttaatcctcagtttggcgcaatatatgtgataatgtccaatatatatgcggagattggtaggtggcatgcagtggagcacaccaggagattgatgtggcagactggattgaagaaaattgtaggctcaagtggcactgaagtgcaaatgttgtgctcctga

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Protein seq

MEASRPAHARHMESNAARAAAAAAGEGVGDHDDDGEEEEEEEKWREALAAAWGQSRAKREAIRARYAAVKDMIRAEKDGADMRRLGVAMGEIEQLHHKVQRPKEQVADGEALLELVNSLAITAKSKKKDGPTPSEFVTSLLTKFGVRASLLDASIESFSCSDLGAMASPLFMTATGCQTMNGALNLAIEERRKRVARRIFDRFPSKPAGLYETTPDLDERNDTDKNMAVMFKLLRKNKCVKLENLILNRQSFAQTVENIFALSFLVKDGRVEIDVDDKGNHFVVPRNAPAAELITSREVINSQYVFRFDTKDWKIMEGVVEPGDELMPHRQNNIGEHYNNAKSYSASEPQRKRDEFAQGEGMDETLIKPCAEDVILKRKRRSEAESLKHCLLLAFRAMLREGVAADHFTFPFALKALAQAHHRSPPPCAAATATATTTLGCLHAQMVKSGHGANVYAASALVHAYVSRADAASARAVFDAARHRNVVTWTAMIAGHAAAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLKSGRWVHATLRRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQDKVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIGHRHVAVCTSLMDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDHVAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLAEAEGMMQMMPIQPSVTMWGSMMNGCKVHGRADIAERVGKQVAELNPQFGAIYVIMSNIYAEIGRWHAVEHTRRLMWQTGLKKIVGSSGTEVQMLCS

Function Putative pentatricopeptide repeat-containing protein At3g05240 [UniProtKB/Swiss-Prot:Q9MA95]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_08g0021450 OsNaBo_08g0021450.01 Chr08 26880765 26886322 + NAM
CDS seq

atggaggccagccggccggcgcacgcgcggcatatggagagcaatgcggcacgcgccgccgccgccgccgccggcgagggagtcggagaccatgacgacgacggcgaggaggaggaggaggaggagaagtggcgggaggcgctcgccgccgcctggggccagagcagggcgaagcgggaggcgatccgggcgcgctacgccgccgtcaaggacatgatacgcgcggagaaggacggcgccgacatgcgccggctcggcgtcgccatgggcgagattgagcagcttcaccacaaagtgcaaaggccaaaggaacaagtcgcagatggtgaagctctgctggagctcgtcaattccctggccatcaccgccaaatccaagaagaaagatggacctaccccttcagagttcgtcacatcactgctgacgaagtttggtgtcagagcttctctcttggatgcttccatcgagtctttctcttgttctgatcttggcgccatggcgtctccattgttcatgacagcaactgggtgccaaacaatgaatggtgctttgaatcttgccatcgaggaacggaggaagcgtgtcgctagaagaatatttgaccggtttcctagcaaacctgcagggctttatgagaccacaccagatctagatgaaaggaatgatactgacaagaacatggctgtcatgttcaaactcttgaggaagaacaaatgtgtgaagctggaaaatctcatcctaaaccggcaatctttcgcacagactgtcgagaacatatttgctctctcgtttcttgtcaaggatggaagagtggagatagatgttgatgataagggaaaccattttgtcgtgccacggaatgctccggcagctgaactgataacctcaagggaagtgatcaacagccaatatgtattccgatttgataccaaggattggaagataatggaaggcgtcgtggagcctggagatgagctaatgcctcatagacaaaacaacattggagaacactacaataatgcaaaatcatattcagcttcagaaccacagagaaaacgagatgaatttgctcagggagagggaatggatgagacactcatcaagccttgcgctgaagatgtcatcctgaagaggaagaggagatcagaagcagagagcttgaaacattgcctcctgctcgccttccgcgccatgctgcgggagggcgtcgcggcggaccacttcacctttcccttcgccctcaaggcgctcgcccaggcgcaccaccgctcgccgccgccgtgcgccgccgcaaccgcaacggcaaccacaacgttggggtgcctccacgcgcagatggtcaaatccggccacggcgccaacgtgtacgcggcctccgccctcgtccacgcctacgtctcccgcgccgacgccgcctccgcgcgcgcggtgttcgacgccgctcgccaccggaacgtggtcacctggacggcgatgatcgcggggcacgccgcggccggggaggcacgggaggcggtcgcgcttttcagggaggccgtggcgcgcgggcaggaggtcaatggcatcaccgtggcgcaggtgatgggggcttgcgctcagagccgcgacctcaagagcgggaggtgggttcatgcgacgctccgacgctggggcgtcgagcctatcttgctcgacgtcgctcttgccacggcggtactccatatgtatgcaagctgtggcggtcttgatgctgccttcgaagtgttcgataaaatgcctcgaagaaatgaggtgtcatggaatgcaatggctgaggtatgcagtagacatggaagacaggataaggttctggaggtgtttccgggtatgcattctgttggaatgaagcccgataaggtgacatggctgagcatactccgcgcctgtacatccaagggagctgcgggcttaggccaaggcgtgcacgcctacatggagaagacgattggtcatagacatgttgcagtttgcacatcgctcatggatatgtactcaaagataggcaatgcacggagtgcactccagatatttcagtgtctcaaaagaaaggatttgatggcatggacaagcatgatcatcggcttagctaagcatggccatggcaaggatgctgtgcaactcttcaaccaaatgcagcatggtggtgttgttccggatcatgttgcatttgtaggtgttcttactgcttgcagccatgctgggatggtagacgaagcaagaaaatactttgactccatgtggaatcattatggcatcaggccaacaatcaaacattatggttgtatgattgatctcttcagtcgtgctggtcgattggcagaggctgagggaatgatgcaaatgatgcctattcaacccagtgtcaccatgtggggaagcatgatgaatggttgcaaggtacatggcagggctgatattgctgagagggtaggaaagcaggttgctgagcttaatcctcagtttggcgcaatatatgtgataatgtccaatatatatgcggagattggtaggtggcatgcagtggagcacaccaggagattgatgtggcagactggattgaagaaaattgtaggctcaagtggcactgaagtgcaaatgttgtgctcctga

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Protein seq

MEASRPAHARHMESNAARAAAAAAGEGVGDHDDDGEEEEEEEKWREALAAAWGQSRAKREAIRARYAAVKDMIRAEKDGADMRRLGVAMGEIEQLHHKVQRPKEQVADGEALLELVNSLAITAKSKKKDGPTPSEFVTSLLTKFGVRASLLDASIESFSCSDLGAMASPLFMTATGCQTMNGALNLAIEERRKRVARRIFDRFPSKPAGLYETTPDLDERNDTDKNMAVMFKLLRKNKCVKLENLILNRQSFAQTVENIFALSFLVKDGRVEIDVDDKGNHFVVPRNAPAAELITSREVINSQYVFRFDTKDWKIMEGVVEPGDELMPHRQNNIGEHYNNAKSYSASEPQRKRDEFAQGEGMDETLIKPCAEDVILKRKRRSEAESLKHCLLLAFRAMLREGVAADHFTFPFALKALAQAHHRSPPPCAAATATATTTLGCLHAQMVKSGHGANVYAASALVHAYVSRADAASARAVFDAARHRNVVTWTAMIAGHAAAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLKSGRWVHATLRRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQDKVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIGHRHVAVCTSLMDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDHVAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLAEAEGMMQMMPIQPSVTMWGSMMNGCKVHGRADIAERVGKQVAELNPQFGAIYVIMSNIYAEIGRWHAVEHTRRLMWQTGLKKIVGSSGTEVQMLCS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0510900 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g40010 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os08g0510900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0021780 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0021670 RBH 0.0 0.0 0.516574
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0021550 RBH 0.0 0.0 0.394341
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0021740 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0021600 RBH 0.623488 1.968105 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0405000 RBH 0.426327 0.0078265 0.430354
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0021480 RBH 0.057627 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0424600 RBH 0.33567 0 2.957449
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0020820 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0021120 RBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0020940 RBH 1.403056 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0021790 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0021140 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G021280 RBH 0.0 0.522721 0.210642
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0014050 SBH 0.819912 8.114318 6.516021
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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