Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g29850 | OGI:09053060 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:18156179-18158501 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTTCGGCCGTCCGCGGGGAGCGAGCGGCGGCGGGCGGGGGCTGAAGCGACGGTGGCCGGCGGGGGCTGAAGCGGCGGCGGCTGCGGGAGCTAGCTGGAGGTACATCCTTCCCCATGAGCAAGCTCCTCCACTGCGCCACCGTCTCCTTCCCGCACCACGCGCGCGCCGCTGAGATCCTCTTCGAGCACTTCACCCCTCGCCCCAACCTCTACATCTACAAGACTACAATTTCATGCTCTCTTCGGCGACGGCGGCGGCCTCCTCCTCGCCGAGTCGTCGACCGGCTGCTCTCTACATGTCGATGATGGCGTCATCCATTCCCCCCGATGAGCAAACCTTCCTGTCGATGCTCAAGTCGGAGCGCCGCTCCGTCGGGAAGCAGGTGCACGTGCACGTGGAGGTGAGTGGCTTGCATTCGAGCGTGTACCTCCGGAACTCGCTGATCAAGATGTACCTCGACGCCGGCGATGTGGAGGCGGAGGAGGCGATGTTCCGGTGTACGCCGACGGCGGACACGGTGTCCTGCAACATCATGCTGTCCGGGTACGTCAAGGGAGGATGCGGCGGGAAGGCGCTGCGGTTTTTCTGCGGCATGGTGTCGAGGGGGATCGGTGTTGATCAGTACTCAGTACACGGCTGTTGCTCTCCTCGCTTGCTGCGGGCGGCTGAAGAAGGCAGTTCTTGGTAGGTCCGTCCATGGCATCATTGTGCGGAGGATCGGTATCGTGGATAGGGGATTGATTTTGAGCAATGCTCTCTTGGATATGTATGCCAAATGCGGGGAAATGAACATGGCCATGAGAGTCTTTGATGAAGCTGGTAAGAAGGATGGCATTTCATGCAACACTATGGTTGCCGGATTCTCACCGGCCGCCACCAATCCGGCCCATGCCCGCCGCTGCCAGCTCCAGTCCACCGTCGCCGCCGCTTCAGCTCCCGCCGCCGCCGCTCGCTCCTCGCGGATGGCCGAAGAGGAGAGGGAGAACAGAAAGAGAGAAGAGAGGAGGAGGGGAGGAAGAAGAAAGGGAAGAGATGACAGTGGGCCCCACAATTTTGTGTGTGGGAATGACAAACATGTCCCACATATATTTTTTAATTAAAATACCACCTCAGTGCCACGTCAGCACACAGACTAGGTCAACACCACCATGTCAACGCCACGTCAGCGAAACCGCTCTCCAAAACCGCTAAGGGAATCAAATTGCACCGGTTTTAATAGTTTAGGGGTGAAGATATCCGGTTTTGCGGTTTAGGGTCATGGATTAGATTCGGGTCACTTTTTAAGGAGTCAAAGTGAACTTATTCCCGTTACTGTTTGGGGCTTTTGTCCACCCGGCCCAGATTCACTCCAAGCCGGCAGGCCACGATAACCGCAGCTCACACCGCCCACGAAGGAGTAAGGGGCTGTTTGGTTGCTACCCTGAGCAAAACTAGCCTGGCCTGGATCTAGCCTGGATCAGGCTAATGACATTACGTGTTTGCTCAGGCCAGGCAAGAGGAAAACAAACTCAGGGTGGCAAGAGGAAAACAAACTCAGCCTGAGCTCCAGGCGCAGTATCGCTAAGAAGAAGAGGGCGTCGTCGTCGCGCGAAGACCCCCACCGCCGCCGCTTTTGCCTCCGACGCCGGCGTGTGAGTCATCACCAACATGCTAAACCCACCGCCACGTAAAGCATCTCGCCCCCTGCCGCTGCGCGAAGCCCTCGATGCCGTCGTCTCAAAGGATTTCGCGCACGAAGCAGTGCTAGATCTGCAGCCGCGAGAACATGCCGGAACCGGATCCTCTGACGTAGCGGTTTCTACGTCAGAGGGACGTCCGGCTACGCTGATCCGTCCGATCGGTATTGGACGGGAGCGATCGAGCAAGCTAGCTCTTGCGGCCCATACAAGAAAAATCGGCCCACGAAGAGGCTCCACCGCCGCCCCCCTGACAACCGAAGCGGCGCCGGTAAGGGGAAGAGAAGGCAAGCATCGGCGCTGCCAATGGGGAAAGCCGACTGACGTGATCTTCATCTCTCTCGAGCTACGGTGTCAGGAGATCGCAGGAGAGACGGGTTGAGGTGGCCTTGGCTTTGTCCGGAAGACCTGCCCTCCCCGGCAGGGCTCGCGCGCACGGCCGCATGTGGTGAGCAAGGCAAAGGTGCCGGTGCGGCGGTGCGGCTGGACATCTGGTGCCCAGGTCCCGAAAGCTTGTGTTCCCGACGTTGCTGGCGGAGGCGTCGGATTACATTGCGGCACTGGAGATGCTGGTGCGCTCCATGGCATAGCTCCAGTTTGTGCTTCGGTCGCGCCGGCGGCAGCGGCGGCGGCGGCGGCGTCGTGA
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| CDS seq | ATGCTCTCTTCGGCGACGGCGGCGGCCTCCTCCTCGCCGAGTCGTCGACCGGCTGCTCTCTACATGTCGATGATGGCGTCATCCATTCCCCCCGATGAGCAAACCTTCCTGTCGATGCTCAAGTCGGAGCGCCGCTCCGTCGGGAAGCAGGTGCACGTGCACGTGGAGGTGAGTGGCTTGCATTCGAGCGTGTACCTCCGGAACTCGCTGATCAAGATGTACCTCGACGCCGGCGATGTGGAGGCGGAGGAGGCGATGTTCCGGTGTACGCCGACGGCGGACACGGTGTCCTGCAACATCATGCTGTCCGGGTACGTCAAGGGAGGATGCGGCGGGAAGGCGCTGCGGTTTTTCTGCGGCATGGTGTCGAGGGGGATCGGTGTTGATCAGTACTCAGTACACGGCTGTTGCTCTCCTCGCTTGCTGCGGGCGGCTGAAGAAGGCAGTTCTTGGCCAGGCAAGAGGAAAACAAACTCAGGGTGGCAAGAGGAAAACAAACTCAGCCTGAGCTCCAGGCGCAGTATCGCTAAGAAGAAGAGGGCGTCGTCGTCGCGCGAAGACCCCCACCGCCGCCGCTTTTGCCTCCGACGCCGGCGTGGCTCGCGCGCACGGCCGCATGTGGTGAGCAAGGCAAAGGTGCCGGTGCGGCGGTGCGGCTGGACATCTGGTGCCCAGGTCCCGAAAGCTTGTGTTCCCGACGTTGCTGGCGGAGGCGTCGGATTACATTGCGGCACTGGAGATGCTGGTGCGCTCCATGGCATAGCTCCAGTTTGTGCTTCGGTCGCGCCGGCGGCAGCGGCGGCGGCGGCGGCGTCGTGA
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| Protein seq | MLSSATAAASSSPSRRPAALYMSMMASSIPPDEQTFLSMLKSERRSVGKQVHVHVEVSGLHSSVYLRNSLIKMYLDAGDVEAEEAMFRCTPTADTVSCNIMLSGYVKGGCGGKALRFFCGMVSRGIGVDQYSVHGCCSPRLLRAAEEGSSWPGKRKTNSGWQEENKLSLSSRRSIAKKKRASSSREDPHRRRFCLRRRRGSRARPHVVSKAKVPVRRCGWTSGAQVPKACVPDVAGGGVGLHCGTGDAGALHGIAPVCASVAPAAAAAAAAS |
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| Function | Pentatricopeptide repeat-containing protein At3g04750, mitochondrial [UniProtKB/Swiss-Prot:Q9SR01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g29850 | LOC_Os09g29850.1 | Chr09 | 18156179 | 18158501 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTCTCTTCGGCGACGGCGGCGGCCTCCTCCTCGCCGAGTCGTCGACCGGCTGCTCTCTACATGTCGATGATGGCGTCATCCATTCCCCCCGATGAGCAAACCTTCCTGTCGATGCTCAAGTCGGAGCGCCGCTCCGTCGGGAAGCAGGTGCACGTGCACGTGGAGGTGAGTGGCTTGCATTCGAGCGTGTACCTCCGGAACTCGCTGATCAAGATGTACCTCGACGCCGGCGATGTGGAGGCGGAGGAGGCGATGTTCCGGTGTACGCCGACGGCGGACACGGTGTCCTGCAACATCATGCTGTCCGGGTACGTCAAGGGAGGATGCGGCGGGAAGGCGCTGCGGTTTTTCTGCGGCATGGTGTCGAGGGGGATCGGTGTTGATCAGTACTCAGTACACGGCTGTTGCTCTCCTCGCTTGCTGCGGGCGGCTGAAGAAGGCAGTTCTTGGCCAGGCAAGAGGAAAACAAACTCAGGGTGGCAAGAGGAAAACAAACTCAGCCTGAGCTCCAGGCGCAGTATCGCTAAGAAGAAGAGGGCGTCGTCGTCGCGCGAAGACCCCCACCGCCGCCGCTTTTGCCTCCGACGCCGGCGTGGCTCGCGCGCACGGCCGCATGTGGTGAGCAAGGCAAAGGTGCCGGTGCGGCGGTGCGGCTGGACATCTGGTGCCCAGGTCCCGAAAGCTTGTGTTCCCGACGTTGCTGGCGGAGGCGTCGGATTACATTGCGGCACTGGAGATGCTGGTGCGCTCCATGGCATAGCTCCAGTTTGTGCTTCGGTCGCGCCGGCGGCAGCGGCGGCGGCGGCGGCGTCGTGA
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| Protein seq | MLSSATAAASSSPSRRPAALYMSMMASSIPPDEQTFLSMLKSERRSVGKQVHVHVEVSGLHSSVYLRNSLIKMYLDAGDVEAEEAMFRCTPTADTVSCNIMLSGYVKGGCGGKALRFFCGMVSRGIGVDQYSVHGCCSPRLLRAAEEGSSWPGKRKTNSGWQEENKLSLSSRRSIAKKKRASSSREDPHRRRFCLRRRRGSRARPHVVSKAKVPVRRCGWTSGAQVPKACVPDVAGGGVGLHCGTGDAGALHGIAPVCASVAPAAAAAAAAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.141064 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0474400 | RBH | 0.362106 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40020 | RBH | 0.273198 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0474400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0013820 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014080 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013910 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0014020 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0303300 | RBH | 0 | 0.7458985 | 0.076953 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013920 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0293500 | RBH | 0.024434 | 0.87573 | 0.593951 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014210 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0013990 | RBH | 0.0 | 0.0 | 0.0 |
