Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g36530 | OGI:08066800 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:23065634-23066980 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAAGTCCAGTGTTGGTGCTGGCTCTCGTTGCGGCGACGCTATTGCCGGCCTCACATTGCAGCGTCAGCGGCGTCGGTTTCCAGCTCAAACTCCGACACGTCGACGCACACGGCAGCTACACCAAGCTGGAGCTTGTCACCCGCGCCATCCGCCGGAGCAGAGCCCGCGTGGCGGCGCTGCAGGCCGTCGCCGCCGCGGCGGCGACGGTGGCGCCCGTGGTGGACCCGATCACCGCGGCGAGGATACTGGTGGCGGCGAGCCAGGGGGAGTACCTGATGGACCTCGCCATCGGCACGCCGCCGCTGCGCTACACGGCCATGGTGGACACCGGCAGCGACCTCATCTGGACGCAGTGCGCGCCGTGCGTGCTCTGCGCCGACCAGCCCACGCCCTACTTCCGGCCGGCGAGGTCCGCCACGTACCGGCTCGTGCCGTGCCGGTCGCCGCTGTGCGCCGCGCTGCCGTACCCTGCATGCTTCCAGAGATCAGTGTGCGTGTACCAGTACTACTACGGCGACGAGGCGTCCACCGCCGGCGTCCTCGCCAGCGAGACCTTCACGTTCGGCGCGGCCAACTCGAGCAAGGTCATGGTGTCCGACGTCGCGTTCGGCTGCGGCAACATCAACTCGGGCCAGCTCGCCAACAGCTCCGGCATGGTCGGCCTCGGCCGCGGGCCGCTGTCGCTGGTGAGCCAGCTCGGCCCGTCGAGGTTCTCCTACTGCCTCACGTCGTTCCTCTCGCCGGAGCCGAGCCGGCTCAACTTCGGCGTGTTCGCGACGCTCAACGGCACCAACGCAAGCTCCTCCGGCTCGCCGGTGCAGTCCACGCCGCTGGTCGTCAACGCGGCGCTGCCGTCCCTCTACTTCATGTCCCTCAAGGGCATCAGCCTCGGCCAGAAGCGGCTGCCCATCGACCCGCTGGTGTTCGCCATCAACGACGACGGCACGGGCGGCGTCTTCATCGACTCCGGCACGTCGCTCACCTGGCTCCAGCAGGACGCGTACGACGCCGTGCGCCGCGAGCTGGTGTCCGTCCTCCGGCCGCTGCCGCCGACGAACGACACCGAGATCGGCCTGGAGACGTGCTTCCCGTGGCCGCCGCCGCCGAGCGTGGCCGTGACGGTCCCGGACATGGAGCTCCACTTCGACGGCGGCGCCAACATGACCGTGCCGCCGGAGAACTACATGCTGATCGACGGCGCCACCGGGTTCCTGTGCCTGGCGATGATCCGCTCCGGCGACGCCACCATCATCGGCAACTACCAGCAGCAGAACATGCACATTTTGTACGACATCGCGAATAGCCTCTTGTCGTTCGTGCCGGCGCCGTGCAACATCGTGTAG
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| CDS seq | ATGGCAAGTCCAGTGTTGGTGCTGGCTCTCGTTGCGGCGACGCTATTGCCGGCCTCACATTGCAGCGTCAGCGGCGTCGGTTTCCAGCTCAAACTCCGACACGTCGACGCACACGGCAGCTACACCAAGCTGGAGCTTGTCACCCGCGCCATCCGCCGGAGCAGAGCCCGCGTGGCGGCGCTGCAGGCCGTCGCCGCCGCGGCGGCGACGGTGGCGCCCGTGGTGGACCCGATCACCGCGGCGAGGATACTGGTGGCGGCGAGCCAGGGGGAGTACCTGATGGACCTCGCCATCGGCACGCCGCCGCTGCGCTACACGGCCATGGTGGACACCGGCAGCGACCTCATCTGGACGCAGTGCGCGCCGTGCGTGCTCTGCGCCGACCAGCCCACGCCCTACTTCCGGCCGGCGAGGTCCGCCACGTACCGGCTCGTGCCGTGCCGGTCGCCGCTGTGCGCCGCGCTGCCGTACCCTGCATGCTTCCAGAGATCAGTGTGCGTGTACCAGTACTACTACGGCGACGAGGCGTCCACCGCCGGCGTCCTCGCCAGCGAGACCTTCACGTTCGGCGCGGCCAACTCGAGCAAGGTCATGGTGTCCGACGTCGCGTTCGGCTGCGGCAACATCAACTCGGGCCAGCTCGCCAACAGCTCCGGCATGGTCGGCCTCGGCCGCGGGCCGCTGTCGCTGGTGAGCCAGCTCGGCCCGTCGAGGTTCTCCTACTGCCTCACGTCGTTCCTCTCGCCGGAGCCGAGCCGGCTCAACTTCGGCGTGTTCGCGACGCTCAACGGCACCAACGCAAGCTCCTCCGGCTCGCCGGTGCAGTCCACGCCGCTGGTCGTCAACGCGGCGCTGCCGTCCCTCTACTTCATGTCCCTCAAGGGCATCAGCCTCGGCCAGAAGCGGCTGCCCATCGACCCGCTGGTGTTCGCCATCAACGACGACGGCACGGGCGGCGTCTTCATCGACTCCGGCACGTCGCTCACCTGGCTCCAGCAGGACGCGTACGACGCCGTGCGCCGCGAGCTGGTGTCCGTCCTCCGGCCGCTGCCGCCGACGAACGACACCGAGATCGGCCTGGAGACGTGCTTCCCGTGGCCGCCGCCGCCGAGCGTGGCCGTGACGGTCCCGGACATGGAGCTCCACTTCGACGGCGGCGCCAACATGACCGTGCCGCCGGAGAACTACATGCTGATCGACGGCGCCACCGGGTTCCTGTGCCTGGCGATGATCCGCTCCGGCGACGCCACCATCATCGGCAACTACCAGCAGCAGAACATGCACATTTTGTACGACATCGCGAATAGCCTCTTGTCGTTCGTGCCGGCGCCGTGCAACATCGTGTAG
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| Protein seq | MASPVLVLALVAATLLPASHCSVSGVGFQLKLRHVDAHGSYTKLELVTRAIRRSRARVAALQAVAAAAATVAPVVDPITAARILVAASQGEYLMDLAIGTPPLRYTAMVDTGSDLIWTQCAPCVLCADQPTPYFRPARSATYRLVPCRSPLCAALPYPACFQRSVCVYQYYYGDEASTAGVLASETFTFGAANSSKVMVSDVAFGCGNINSGQLANSSGMVGLGRGPLSLVSQLGPSRFSYCLTSFLSPEPSRLNFGVFATLNGTNASSSGSPVQSTPLVVNAALPSLYFMSLKGISLGQKRLPIDPLVFAINDDGTGGVFIDSGTSLTWLQQDAYDAVRRELVSVLRPLPPTNDTEIGLETCFPWPPPPSVAVTVPDMELHFDGGANMTVPPENYMLIDGATGFLCLAMIRSGDATIIGNYQQQNMHILYDIANSLLSFVPAPCNIV |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g36530 | LOC_Os08g36530.1 | Chr08 | 23065634 | 23066980 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAAGTCCAGTGTTGGTGCTGGCTCTCGTTGCGGCGACGCTATTGCCGGCCTCACATTGCAGCGTCAGCGGCGTCGGTTTCCAGCTCAAACTCCGACACGTCGACGCACACGGCAGCTACACCAAGCTGGAGCTTGTCACCCGCGCCATCCGCCGGAGCAGAGCCCGCGTGGCGGCGCTGCAGGCCGTCGCCGCCGCGGCGGCGACGGTGGCGCCCGTGGTGGACCCGATCACCGCGGCGAGGATACTGGTGGCGGCGAGCCAGGGGGAGTACCTGATGGACCTCGCCATCGGCACGCCGCCGCTGCGCTACACGGCCATGGTGGACACCGGCAGCGACCTCATCTGGACGCAGTGCGCGCCGTGCGTGCTCTGCGCCGACCAGCCCACGCCCTACTTCCGGCCGGCGAGGTCCGCCACGTACCGGCTCGTGCCGTGCCGGTCGCCGCTGTGCGCCGCGCTGCCGTACCCTGCATGCTTCCAGAGATCAGTGTGCGTGTACCAGTACTACTACGGCGACGAGGCGTCCACCGCCGGCGTCCTCGCCAGCGAGACCTTCACGTTCGGCGCGGCCAACTCGAGCAAGGTCATGGTGTCCGACGTCGCGTTCGGCTGCGGCAACATCAACTCGGGCCAGCTCGCCAACAGCTCCGGCATGGTCGGCCTCGGCCGCGGGCCGCTGTCGCTGGTGAGCCAGCTCGGCCCGTCGAGGTTCTCCTACTGCCTCACGTCGTTCCTCTCGCCGGAGCCGAGCCGGCTCAACTTCGGCGTGTTCGCGACGCTCAACGGCACCAACGCAAGCTCCTCCGGCTCGCCGGTGCAGTCCACGCCGCTGGTCGTCAACGCGGCGCTGCCGTCCCTCTACTTCATGTCCCTCAAGGGCATCAGCCTCGGCCAGAAGCGGCTGCCCATCGACCCGCTGGTGTTCGCCATCAACGACGACGGCACGGGCGGCGTCTTCATCGACTCCGGCACGTCGCTCACCTGGCTCCAGCAGGACGCGTACGACGCCGTGCGCCGCGAGCTGGTGTCCGTCCTCCGGCCGCTGCCGCCGACGAACGACACCGAGATCGGCCTGGAGACGTGCTTCCCGTGGCCGCCGCCGCCGAGCGTGGCCGTGACGGTCCCGGACATGGAGCTCCACTTCGACGGCGGCGCCAACATGACCGTGCCGCCGGAGAACTACATGCTGATCGACGGCGCCACCGGGTTCCTGTGCCTGGCGATGATCCGCTCCGGCGACGCCACCATCATCGGCAACTACCAGCAGCAGAACATGCACATTTTGTACGACATCGCGAATAGCCTCTTGTCGTTCGTGCCGGCGCCGTGCAACATCGTGTAG
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| Protein seq | MASPVLVLALVAATLLPASHCSVSGVGFQLKLRHVDAHGSYTKLELVTRAIRRSRARVAALQAVAAAAATVAPVVDPITAARILVAASQGEYLMDLAIGTPPLRYTAMVDTGSDLIWTQCAPCVLCADQPTPYFRPARSATYRLVPCRSPLCAALPYPACFQRSVCVYQYYYGDEASTAGVLASETFTFGAANSSKVMVSDVAFGCGNINSGQLANSSGMVGLGRGPLSLVSQLGPSRFSYCLTSFLSPEPSRLNFGVFATLNGTNASSSGSPVQSTPLVVNAALPSLYFMSLKGISLGQKRLPIDPLVFAINDDGTGGVFIDSGTSLTWLQQDAYDAVRRELVSVLRPLPPTNDTEIGLETCFPWPPPPSVAVTVPDMELHFDGGANMTVPPENYMLIDGATGFLCLAMIRSGDATIIGNYQQQNMHILYDIANSLLSFVPAPCNIV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0469000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g27910 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0469000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0019030 | RBH | 0.0 | 2.016238 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018910 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0018830 | RBH | 0.161257 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0019030 | SBH | 0.131430 | 0.036277 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0018880 | RBH | 0.0 | 10.103371 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0367300 | RBH | 0.0085815 | 0.2180535 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0018800 | RBH | 0.0 | 0.202542 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0386100 | RBH | 0.0423935 | 0.023969 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0018130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0018400 | SBH | 0.0 | 3.521240 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0018250 | SBH | 3.029876 | 6.090907 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0019090 | SBH | 0.0 | 0.913351 | 0.141000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0018450 | RBH | 0.042027 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G018630 | SBH | 0.0 | 0.0 | 0.456389 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0018740 | SBH | 0.532225 | 7.530876 | 0.0 |
