Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g27910 | OGI:09049710 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:16970180-16971732 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTACATTCTACATCCCGTTCAAGGTAGTAGGGTAGTAGTAGCATTTGCTGCCGTGATACGCTCTCTGCTGCTCCAGAGAATGGCAAGCATGGCGGTGTTCTTGCTCGTCTTGCTGGCAGCGCTTGTTTCCGTGGATGTCGCCGCGGCGCATTCCGGTGGCGGCTTCGGCTTCAAGGCGACGCTTACCCACGTCGACGCGAACGCCGGGTACACGAAGGCGCAGCTGCTGTCCCGCGCCGTCGCGCGGAGCAGAGCCCGCGTGGCGGCGCTGCAGTCGCTGGCGACGGCGGCGGACGCGATCACCGCGGCACGCATCCTGCTGCGGTTCAGCGAGGGGGAGTACCTGATGGACGTGGGCATCGGCTCGCCGCCGCGGTACTTCTCGGCCATGATCGACACCGGCAGCGACCTCATCTGGACGCAGTGCGCGCCGTGCCTGCTCTGCGTGGAGCAGCCGACGCCCTACTTCGAGCCGGCGAAGTCGACGTCGTACGCGTCGCTGCCGTGCTCGTCCGCGATGTGCAACGCGCTCTACTCCCCGCTCTGCTTCCAGAACGCGTGCGTCTACCAGGCGTTCTACGGCGACAGCGCGTCGTCCGCGGGCGTCCTCGCCAACGAGACGTTCACGTTCGGCACCAACTCAACGCGTGTCGCCGTGCCGAGGGTCTCGTTCGGCTGCGGCAACATGAACGCCGGCACGCTCTTCAACGGCTCCGGCATGGTCGGCTTTGGCCGGGGCGCGCTGTCGCTGGTGAGCCAGCTCGGGTCGCCCAGGTTCTCCTACTGCCTCACCTCCTTCATGTCGCCGGCGACGAGCCGGCTCTACTTCGGCGCGTACGCCACGCTCAACAGCACCAACACGAGCAGCAGCGGGCCGGTGCAGTCCACGCCGTTCATCGTCAACCCAGCGCTGCCGACCATGTACTTCCTGAACATGACCGGCATCAGCGTCGCCGGCGACCTGCTGCCGATCGACCCGTCGGTGTTCGCCATCAACGAGACCGACGGCACGGGCGGGGTCATCATCGACTCCGGCACGACCGTCACGTTCCTGGCGCAGCCGGCGTACGCGATGGTGCAGGGGGCGTTCGTGGCGTGGGTCGGGCTGCCCAGGGCGAACGCCACGCCGTCGGACACCTTCGACACGTGCTTCAAGTGGCCGCCGCCGCCGCGCCGGATGGTGACGCTGCCGGAGATGGTGCTCCACTTCGACGGGGCGGACATGGAGCTGCCGCTGGAGAACTACATGGTGATGGACGGCGGCACCGGCAACCTGTGCCTGGCGATGCTGCCGTCGGACGACGGCTCCATCATCGGGAGCTTCCAGCACCAGAACTTCCACATGCTCTACGACCTCGAGAACAGCCTCCTCTCCTTCGTCCCTGCGCCGTGCAACCTCAGCTAGCTAGTCTCAAATTTCTTTGTGTCGATTTGGTTCATGATCTGTGTGTATCATGTAATGGAGGGTTTGGTTTATTAGGATGTTAATTTGGTTGTGTCCTCTCAGCCACAGTTGGATTAGTGGACTAATAATTAAGCAGCTCATTTGATT
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| CDS seq | ATGGCAAGCATGGCGGTGTTCTTGCTCGTCTTGCTGGCAGCGCTTGTTTCCGTGGATGTCGCCGCGGCGCATTCCGGTGGCGGCTTCGGCTTCAAGGCGACGCTTACCCACGTCGACGCGAACGCCGGGTACACGAAGGCGCAGCTGCTGTCCCGCGCCGTCGCGCGGAGCAGAGCCCGCGTGGCGGCGCTGCAGTCGCTGGCGACGGCGGCGGACGCGATCACCGCGGCACGCATCCTGCTGCGGTTCAGCGAGGGGGAGTACCTGATGGACGTGGGCATCGGCTCGCCGCCGCGGTACTTCTCGGCCATGATCGACACCGGCAGCGACCTCATCTGGACGCAGTGCGCGCCGTGCCTGCTCTGCGTGGAGCAGCCGACGCCCTACTTCGAGCCGGCGAAGTCGACGTCGTACGCGTCGCTGCCGTGCTCGTCCGCGATGTGCAACGCGCTCTACTCCCCGCTCTGCTTCCAGAACGCGTGCGTCTACCAGGCGTTCTACGGCGACAGCGCGTCGTCCGCGGGCGTCCTCGCCAACGAGACGTTCACGTTCGGCACCAACTCAACGCGTGTCGCCGTGCCGAGGGTCTCGTTCGGCTGCGGCAACATGAACGCCGGCACGCTCTTCAACGGCTCCGGCATGGTCGGCTTTGGCCGGGGCGCGCTGTCGCTGGTGAGCCAGCTCGGGTCGCCCAGGTTCTCCTACTGCCTCACCTCCTTCATGTCGCCGGCGACGAGCCGGCTCTACTTCGGCGCGTACGCCACGCTCAACAGCACCAACACGAGCAGCAGCGGGCCGGTGCAGTCCACGCCGTTCATCGTCAACCCAGCGCTGCCGACCATGTACTTCCTGAACATGACCGGCATCAGCGTCGCCGGCGACCTGCTGCCGATCGACCCGTCGGTGTTCGCCATCAACGAGACCGACGGCACGGGCGGGGTCATCATCGACTCCGGCACGACCGTCACGTTCCTGGCGCAGCCGGCGTACGCGATGGTGCAGGGGGCGTTCGTGGCGTGGGTCGGGCTGCCCAGGGCGAACGCCACGCCGTCGGACACCTTCGACACGTGCTTCAAGTGGCCGCCGCCGCCGCGCCGGATGGTGACGCTGCCGGAGATGGTGCTCCACTTCGACGGGGCGGACATGGAGCTGCCGCTGGAGAACTACATGGTGATGGACGGCGGCACCGGCAACCTGTGCCTGGCGATGCTGCCGTCGGACGACGGCTCCATCATCGGGAGCTTCCAGCACCAGAACTTCCACATGCTCTACGACCTCGAGAACAGCCTCCTCTCCTTCGTCCCTGCGCCGTGCAACCTCAGCTAG
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| Protein seq | MASMAVFLLVLLAALVSVDVAAAHSGGGFGFKATLTHVDANAGYTKAQLLSRAVARSRARVAALQSLATAADAITAARILLRFSEGEYLMDVGIGSPPRYFSAMIDTGSDLIWTQCAPCLLCVEQPTPYFEPAKSTSYASLPCSSAMCNALYSPLCFQNACVYQAFYGDSASSAGVLANETFTFGTNSTRVAVPRVSFGCGNMNAGTLFNGSGMVGFGRGALSLVSQLGSPRFSYCLTSFMSPATSRLYFGAYATLNSTNTSSSGPVQSTPFIVNPALPTMYFLNMTGISVAGDLLPIDPSVFAINETDGTGGVIIDSGTTVTFLAQPAYAMVQGAFVAWVGLPRANATPSDTFDTCFKWPPPPRRMVTLPEMVLHFDGADMELPLENYMVMDGGTGNLCLAMLPSDDGSIIGSFQHQNFHMLYDLENSLLSFVPAPCNLS |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g27910 | LOC_Os09g27910.1 | Chr09 | 16970180 | 16971732 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAAGCATGGCGGTGTTCTTGCTCGTCTTGCTGGCAGCGCTTGTTTCCGTGGATGTCGCCGCGGCGCATTCCGGTGGCGGCTTCGGCTTCAAGGCGACGCTTACCCACGTCGACGCGAACGCCGGGTACACGAAGGCGCAGCTGCTGTCCCGCGCCGTCGCGCGGAGCAGAGCCCGCGTGGCGGCGCTGCAGTCGCTGGCGACGGCGGCGGACGCGATCACCGCGGCACGCATCCTGCTGCGGTTCAGCGAGGGGGAGTACCTGATGGACGTGGGCATCGGCTCGCCGCCGCGGTACTTCTCGGCCATGATCGACACCGGCAGCGACCTCATCTGGACGCAGTGCGCGCCGTGCCTGCTCTGCGTGGAGCAGCCGACGCCCTACTTCGAGCCGGCGAAGTCGACGTCGTACGCGTCGCTGCCGTGCTCGTCCGCGATGTGCAACGCGCTCTACTCCCCGCTCTGCTTCCAGAACGCGTGCGTCTACCAGGCGTTCTACGGCGACAGCGCGTCGTCCGCGGGCGTCCTCGCCAACGAGACGTTCACGTTCGGCACCAACTCAACGCGTGTCGCCGTGCCGAGGGTCTCGTTCGGCTGCGGCAACATGAACGCCGGCACGCTCTTCAACGGCTCCGGCATGGTCGGCTTTGGCCGGGGCGCGCTGTCGCTGGTGAGCCAGCTCGGGTCGCCCAGGTTCTCCTACTGCCTCACCTCCTTCATGTCGCCGGCGACGAGCCGGCTCTACTTCGGCGCGTACGCCACGCTCAACAGCACCAACACGAGCAGCAGCGGGCCGGTGCAGTCCACGCCGTTCATCGTCAACCCAGCGCTGCCGACCATGTACTTCCTGAACATGACCGGCATCAGCGTCGCCGGCGACCTGCTGCCGATCGACCCGTCGGTGTTCGCCATCAACGAGACCGACGGCACGGGCGGGGTCATCATCGACTCCGGCACGACCGTCACGTTCCTGGCGCAGCCGGCGTACGCGATGGTGCAGGGGGCGTTCGTGGCGTGGGTCGGGCTGCCCAGGGCGAACGCCACGCCGTCGGACACCTTCGACACGTGCTTCAAGTGGCCGCCGCCGCCGCGCCGGATGGTGACGCTGCCGGAGATGGTGCTCCACTTCGACGGGGCGGACATGGAGCTGCCGCTGGAGAACTACATGGTGATGGACGGCGGCACCGGCAACCTGTGCCTGGCGATGCTGCCGTCGGACGACGGCTCCATCATCGGGAGCTTCCAGCACCAGAACTTCCACATGCTCTACGACCTCGAGAACAGCCTCCTCTCCTTCGTCCCTGCGCCGTGCAACCTCAGCTAG
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| Protein seq | MASMAVFLLVLLAALVSVDVAAAHSGGGFGFKATLTHVDANAGYTKAQLLSRAVARSRARVAALQSLATAADAITAARILLRFSEGEYLMDVGIGSPPRYFSAMIDTGSDLIWTQCAPCLLCVEQPTPYFEPAKSTSYASLPCSSAMCNALYSPLCFQNACVYQAFYGDSASSAGVLANETFTFGTNSTRVAVPRVSFGCGNMNAGTLFNGSGMVGFGRGALSLVSQLGSPRFSYCLTSFMSPATSRLYFGAYATLNSTNTSSSGPVQSTPFIVNPALPTMYFLNMTGISVAGDLLPIDPSVFAINETDGTGGVIIDSGTTVTFLAQPAYAMVQGAFVAWVGLPRANATPSDTFDTCFKWPPPPRRMVTLPEMVLHFDGADMELPLENYMVMDGGTGNLCLAMLPSDDGSIIGSFQHQNFHMLYDLENSLLSFVPAPCNLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0452400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g36530 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0452400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0012530 | SBH | 0.000000 | 1.107906 | 1.260704 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0012470 | SBH | 0.000000 | 0.000000 | 0.650943 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0012730 | SBH | 0.039162 | 0.000000 | 2.679514 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0012530 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0012620 | SBH | 1.264293 | 2.050682 | 1.297817 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0283800 | RBH | 0.021312 | 0.3629555 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0012550 | SBH | 0.067155 | 0.0 | 0.331080 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0272900 | RBH | 0.0301765 | 0.0825345 | 0.026315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0012520 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0012320 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0012410 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0012300 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0012330 | SBH | 0.000000 | 2.471777 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G012850 | RBH | 0.0 | 0.0 | 1.558421 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0012620 | SBH | 0.0 | 1.353540 | 1.908731 |
