Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g29020 | OGI:08071080 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:17766008-17770910 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATGCTTCTGGGCTCGCGCTCCCGCGCACACACTGCGCACACACACACACAAACACAAAGATGGAGAGGGTAGCAACACTGGTCTCTTGTATAGCGGCCGCGACCGCTATGCTGCTTGCGGTGGCAGCAGCCGCAGCGGGGAGTGGCGGCGGCGGCTGCACGCGGAGCTGCGGCAACATCAGCGTGCCGTACCCGTTCGGCGTGGAGGCCGACTGCTACTACCCCGGCTTCAACCTCACCTGCAACCACTCGTACCACCCGCCCACGCTCTTCCTCGTCGACGGCGCCGGCACGTCCCACCAGGTGCTCGACATCTCCATCTCCAACTCCACGGTGCGCATCAACAGCAGCCTCATCGCGTTCACCAAGTCTGCCGACAAGCAAGCCGTCATCAACACAACGTGGGAGGTGAGAGGCCCGTACTACCTGTTGGATGATCCTTCCAATATGGTCGTCTTGGTAGGCTGCCAAGCGCGGTTCGACGTCCGGGGAGGAAGCAACAACACCCTGATCAGCTCCTGCACCGTCGTGTGCCCATCACCTGATCCTAGCACCACCTACATCGGAGCTGGCGACGGCTCCTGCTCGGGCGTCGGCTGCTGCCAGGCGAACATCGTCCTACGCTACTCTCGCTACACCGTCCAGATCCACGACCTGCAAGAGCAGGATGCGCCGTCGTCCAGTCCTACTTTTAATGATGGCTCGGCGTACATAGTAGATCAGCCATTCAATTACACCGGCCTTATGATTTTCGAAAAAAATTTCCCTCAAGCGCTCCCAGCCATGCTAGACTGGTTCATAGTAGGTGATAATTCGACATGCCCGATGTCGACGAATGAGTCTGCGCCTGCGCCTGCGTCCGCTGCCGAGTGTCGCAGCGTGCACAGCTTTTACGAAGGTTACTACGGTGACGTTTCTGACGATGTGGTGGTGGGGTATCGGTGCCGCTGCTCTCCGGGTTACCAAGGAAATCCTTACGTAAAAGATGGATGCTACGGTATGTGTTTACCCTCTCTGTTTTTTTTTACGGAATTGCCAGAAAACTTGCGCAAGTTTTTTTTCATCCCAGCTTCCCAATTTTTAGCCGTACGATGCTACGTTAAAATTTGTGTTAAACCAGTTATATATTATAATTACAGTATAGTTACAATTAGTTACAATAAGATGCAATAACTGTAACTATATTATAACCTCTATATAATTTAGGTATAAAAGGTTGCCTATATTTTTTTAATACTTATATACAAGTTATATTATAGCTATAATATAATTATGAGGAATTACATCATAACTATGTTACATTATATTTAAAAGTTTCCACTTAAAAAATTTGCAACAGATTTTTTAGATAATTATCCTCTATCTCATAATATATGACATTACTTAGTTCATTTTAAACTATCCAACGTCACAACAAAATAAATATATTTATAATATTTTTAGATGCATCTATACATGATGTGACAAATTTCCAACTACAAAGGACAACATTCAAATTTCTCTAAATCTCTACTACTTAAAAAAATTATTTTTTTAAAGAAGTTTCCGTCTGTCTACAACAAAAAAAAGAGCGAAAAAAACGTAAAAAGAAAAAAAAAGAAAGTCCGATTCAATCAATGACGCGGAAAAAAAAAGCTGTAAAAAAGGGTGATAAAAAAACGTAAGGAAGGGTGAAAAAAGGCGCGGCAGATCGCTCCCTTGTGTCCTAACCCCGAGTCTGATTAAAATAGATAAAATCAAATCTTTTGCAAAAGTCAAAGCCTCCTATTTCTATTTCTGAAGATATTCTGTCACACAATCCCCAACCCCGCCCCCAAAAAAAAATTCCCGGTCAGAATTCCATCGCACAAATAAAACTGAAGCATATACACACAAATTTTATCCAAAAATTCCCATGCAGCTAGATCTAAGGGGAGACTACCGCCGTCACCGCCGAACCGCCGCCACCGTCGCAGGGACACCTGGCCACCGCCGGCTCCCCTCCCACTGCGCCCTCCCCACCGCCAGATCCGGCGGAGGGAAGGACACCGCCCCTATCCGCCGCCTCCCCTCCCACCGGAAGGGTGGGCGCCACCGCCTGCCGCCGCACGCCACGATCAAGCCCTCCCGCGGCCCCATGGCGAGGGAGAGGAGGCGAGGGGCAGAGAGGCTCCACCGCCCGTCTCACGGAAAGAGAGCCGCTGACGCCAAGGATTAGCTTGCCGGCCGCTGCTCACCACTGCTCGCCAGGCAGCCTTGGCACAGGATCGCATGTAGAAGGAGAGGGAGAGAGGAGGCACCACGGCTGAGTCGCCGGCTCAGGGCAAGGGCACCGCCGTCTCAGGGGAAGGGTGCCACGGGGAGCGACGCCGCCATGGGGGGAGGGACGGAGATGGAGGGGAGAAGAAGAAAAACCGAGAGGAGGAGAGAAAAACTGAGAGGAGAAGGAAAACGAGATAAGGATCTGCGGAAGACTCGAGGCACGCGGCGCTCTCTCTCCGAGCGGTAAAAAAAAGTCAATTGTGTTACTTGTAATAATCATAGTCTAAGCAGGGGTTAAGATAAATCAAGTGTAGAGTGACATACAAGCAGGGAGCTAATCATTCTCATACTAAAATATCTAAGCTAAGTGGAAAGAAAATAGAAAGAGAATCTATTCCTATACTTCTAGTATACATAATATACATACATTCTAGTTATATGATTAACTAGCTAATACCCTCTTTCCGATGTCCTCCTAGTATTTCGAGAAGCCACCCCTTACTGCCGAGTTCCTTACGACAGCCCGTCATGACCATACAACCGAGGCTAAATACGGAGGAGTACCCTCCCCAGGAAATTAACTAAGGACTATATACACGCACAAAGGAATACCCGTACTGAGCTATCACCATCAGCGGCCCATCTCTCATCCGCAGCATATAACCCAAATAATGATATCCCGTAATCTAGACACCACGCCTAAACTACTATATACTACTCTAATATCATCGTCATGACATAGAGTAATTGCATAAGCAAACATTATACCCGTACCTATGCATCTCCTAGATAAGCTAGCAGTATAATCAGTATAACATGAACATAATATAAAATTGGCATTCATATACTCGGAAAGTATTTCAATACCATAAATATATAAAGAAGAGTATTCTAATAACAGTACAAAGCTTACAAAAGAGGAAATGAAAGCTACTATAGCCATACCCGAACTCTTCCAAAGGCTTCCGGACTCCAATTTCTATTCTATTCCTACTCCATTAGCTTAAGAACACTAAACTAAACTTGAGAGAATATGAGAGAGCTTTTCTTGAGGTGTGTGTATGGAGTAAGGAGGTGAAGCCCTTTTATAGCTGATAATGACGGTTGTGGCAGTTGGAAATGTCCTAACTGCCCTGCAACCATCATTGAGGATGAATCCTGGACGTCGACGCAAAACCCCAGGATGGACGGCGCTGATGGGGGTTCGGCCGAACCATGGGCTGGGCCAAACCAGCCCATCCTCGGCTGGCGGCCTCCTCCACTGCTTCTTTCCACAAACTTGTGAATTTTGGCCCAATTGGTCGTGTCATTTCTGAGTTCTTGGCCCATTCATACATAAGTCTGATCCTTGACATCGTCTGATTGATTTATCGTCTAATTTCATGTTGATTCTCCTCCACTTTATGGTTATTCTCTGCAAAAGGTTAGTAGATCTAATACTAGTGGAATATTATTATTCTAACACAAATATGCATTGCAAGCATAACTAGTTCTCCTCTATTTTGATAATATTGACGGTCGAAACTAATCGCTAACGATCGTCAACATAAATTTACCACTTTTTAATCGTTATTGCAAAAATGAAACTACAAAATTACAAAAATACCACTAGAACTGTAATTCGAGTGGCATCCTTACAAAATTGAAAAAAACGGTGGTAATTTGCAAATGCCCTTAAAAAACCACTTATAACTTAGTGCTTTATTTATAAAAAGGTTATATCTTATTTTAACTACTTAAAAAATAGTAATTTTTCGTTCGTCACCTAATTCTTTCATCCTTAAATCTGTTTTTTGGCCATACGCATATTTGTGTTGGCATTCATCCGTCATTCCTTTCTCGCAATCCGATCTGAGCGACGCATCCAGCCAAGGCGCTACTAAAATGAAGGGAAAAGCAAGGATGGATTCGATTTAGACATTGAATCGGACAAATAACCACAATAAAATCCACTTGGAGGGAACCAGGAGATTGCAATCCAATGAAATCGATCAATCACCTGGTACTTTGCATCGGCACTGGGCATCGTTCCCCTACCGGATTTCTGATCACGACATGCATGCTCACGCACACCATGAGGTGTCTGACCTCGTGGCGCGCGACAGCTGCCACCTGCTCGTCGCCCACGCCTCCTCCATGCCGCCTCCGGCCCCCATGTCCTCGTCGTCGAGGCGTGCCACACACGACATCACGAGCAGTGGCGAGACTCGCCATCAGAGCACCTACCTCAGTCGTCGCTGCTGCCGCCACCACCACGCGTCGTCCGCACTGGTGTATCTGGCTCAAATGTTCAGGCATGCAGATCTAAAACAAGTATTGCTTAGGCTTTGTTTTCTCGGAATGAGATCAAATTGATCGAGGCTTTGGGTCGGATAGGATCCTCGATTTTTCCATCTCCTATATGGCTTCCATGATTATATTCTCTTGTATTGGAGATCCTACATGTCTCTGTATGCAATTATCAGACTACCAGACAGTATAGCTAATTCTTGGTAGCTTATCATATAAAAATAACAATAAAAAATAAACATATTTTTAATTGTTATTAAAAGAGGAGTGCATTGAGGCTCTATTTGTCTAGACTTGACAATATGAGACAATGTAGGATTTGATTAATCCTATTATTAATTGCAAAAATGAGATTGAAAGAGTATTTTGGATT
More
|
||||||||||
| CDS seq | ATGGAGAGGGTAGCAACACTGGTCTCTTGTATAGCGGCCGCGACCGCTATGCTGCTTGCGGTGGCAGCAGCCGCAGCGGGGAGTGGCGGCGGCGGCTGCACGCGGAGCTGCGGCAACATCAGCGTGCCGTACCCGTTCGGCGTGGAGGCCGACTGCTACTACCCCGGCTTCAACCTCACCTGCAACCACTCGTACCACCCGCCCACGCTCTTCCTCGTCGACGGCGCCGGCACGTCCCACCAGGTGCTCGACATCTCCATCTCCAACTCCACGGTGCGCATCAACAGCAGCCTCATCGCGTTCACCAAGTCTGCCGACAAGCAAGCCGTCATCAACACAACGTGGGAGGTGAGAGGCCCGTACTACCTGTTGGATGATCCTTCCAATATGGTCGTCTTGGTAGGCTGCCAAGCGCGGTTCGACGTCCGGGGAGGAAGCAACAACACCCTGATCAGCTCCTGCACCGTCGTGTGCCCATCACCTGATCCTAGCACCACCTACATCGGAGCTGGCGACGGCTCCTGCTCGGGCGTCGGCTGCTGCCAGGCGAACATCGTCCTACGCTACTCTCGCTACACCGTCCAGATCCACGACCTGCAAGAGCAGGATGCGCCGTCGTCCAGTCCTACTTTTAATGATGGCTCGGCGTACATAGTAGATCAGCCATTCAATTACACCGGCCTTATGATTTTCGAAAAAAATTTCCCTCAAGCGCTCCCAGCCATGCTAGACTGGTTCATAGTAGGTGATAATTCGACATGCCCGATGTCGACGAATGAGTCTGCGCCTGCGCCTGCGTCCGCTGCCGAGTGTCGCAGCGTGCACAGCTTTTACGAAGGTTACTACGGTGACGTTTCTGACGATGTGGTGGTGGGGTATCGGTGCCGCTGCTCTCCGGGTTACCAAGGAAATCCTTACGTAAAAGATGGATGCTACGGTATGTGTTTACCCTCTCTGTTTTTTTTTACGGAATTGCCAGAAAACTTGCGCAAGTTTTTTTTCATCCCAGCTTCCCAATTTTTAGCCGTACGATGCTACGTTAAAATTTGTGTTAAACCAGTTATATATTATAATTACAGTATAGTTACAATTAGTTACAATAAGATGCAATAA
More
|
||||||||||
| Protein seq | MERVATLVSCIAAATAMLLAVAAAAAGSGGGGCTRSCGNISVPYPFGVEADCYYPGFNLTCNHSYHPPTLFLVDGAGTSHQVLDISISNSTVRINSSLIAFTKSADKQAVINTTWEVRGPYYLLDDPSNMVVLVGCQARFDVRGGSNNTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANIVLRYSRYTVQIHDLQEQDAPSSSPTFNDGSAYIVDQPFNYTGLMIFEKNFPQALPAMLDWFIVGDNSTCPMSTNESAPAPASAAECRSVHSFYEGYYGDVSDDVVVGYRCRCSPGYQGNPYVKDGCYGMCLPSLFFFTELPENLRKFFFIPASQFLAVRCYVKICVKPVIYYNYSIVTISYNKMQ |
||||||||||
| Function | Wall-associated receptor kinase 2 [UniProtKB/Swiss-Prot:Q9LMP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g29020 | LOC_Os08g29020.1 | Chr08 | 17766008 | 17770910 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGGGTAGCAACACTGGTCTCTTGTATAGCGGCCGCGACCGCTATGCTGCTTGCGGTGGCAGCAGCCGCAGCGGGGAGTGGCGGCGGCGGCTGCACGCGGAGCTGCGGCAACATCAGCGTGCCGTACCCGTTCGGCGTGGAGGCCGACTGCTACTACCCCGGCTTCAACCTCACCTGCAACCACTCGTACCACCCGCCCACGCTCTTCCTCGTCGACGGCGCCGGCACGTCCCACCAGGTGCTCGACATCTCCATCTCCAACTCCACGGTGCGCATCAACAGCAGCCTCATCGCGTTCACCAAGTCTGCCGACAAGCAAGCCGTCATCAACACAACGTGGGAGGTGAGAGGCCCGTACTACCTGTTGGATGATCCTTCCAATATGGTCGTCTTGGTAGGCTGCCAAGCGCGGTTCGACGTCCGGGGAGGAAGCAACAACACCCTGATCAGCTCCTGCACCGTCGTGTGCCCATCACCTGATCCTAGCACCACCTACATCGGAGCTGGCGACGGCTCCTGCTCGGGCGTCGGCTGCTGCCAGGCGAACATCGTCCTACGCTACTCTCGCTACACCGTCCAGATCCACGACCTGCAAGAGCAGGATGCGCCGTCGTCCAGTCCTACTTTTAATGATGGCTCGGCGTACATAGTAGATCAGCCATTCAATTACACCGGCCTTATGATTTTCGAAAAAAATTTCCCTCAAGCGCTCCCAGCCATGCTAGACTGGTTCATAGTAGGTGATAATTCGACATGCCCGATGTCGACGAATGAGTCTGCGCCTGCGCCTGCGTCCGCTGCCGAGTGTCGCAGCGTGCACAGCTTTTACGAAGGTTACTACGGTGACGTTTCTGACGATGTGGTGGTGGGGTATCGGTGCCGCTGCTCTCCGGGTTACCAAGGAAATCCTTACGTAAAAGATGGATGCTACGGTATGTGTTTACCCTCTCTGTTTTTTTTTACGGAATTGCCAGAAAACTTGCGCAAGTTTTTTTTCATCCCAGCTTCCCAATTTTTAGCCGTACGATGCTACGTTAAAATTTGTGTTAAACCAGTTATATATTATAATTACAGTATAGTTACAATTAGTTACAATAAGATGCAATAA
More
|
|||||||
| Protein seq | MERVATLVSCIAAATAMLLAVAAAAAGSGGGGCTRSCGNISVPYPFGVEADCYYPGFNLTCNHSYHPPTLFLVDGAGTSHQVLDISISNSTVRINSSLIAFTKSADKQAVINTTWEVRGPYYLLDDPSNMVVLVGCQARFDVRGGSNNTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANIVLRYSRYTVQIHDLQEQDAPSSSPTFNDGSAYIVDQPFNYTGLMIFEKNFPQALPAMLDWFIVGDNSTCPMSTNESAPAPASAAECRSVHSFYEGYYGDVSDDVVVGYRCRCSPGYQGNPYVKDGCYGMCLPSLFFFTELPENLRKFFFIPASQFLAVRCYVKICVKPVIYYNYSIVTISYNKMQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.370078 | 0.034346 | 0.031329 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0378000 | RBH | 0.987192 | 0.084816 | 0.228803 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0378000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014330 | SBH | 0.056627 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020990 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013580 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021100 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020970 | SBH | 0.0 | 0.000000 | 1.175692 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0395000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020860 | SBH | 0.0 | 0.000000 | 0.026833 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0414900 | SBH | 0.080256 | 0.345905 | 1.061677 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020190 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013860 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020310 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013960 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020520 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013890 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014040 | RBH | 0.656499 | 0.0 | 0.0 |
