Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0013960 | OGI:08071080 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:19023075-19026245 | ||||||||
| Gene Symbol | RLCK254, OsRLCK254 | ||||||||||
| DNA seq | ttatcgaggaaagcttgatgacaacatttccaactccatactgtattgtctacttgctcctgtggtaactccttcaatcagcgtttgaagagctgaatttccattttcatcgggtctacatgaggcagtattccctctacgggatgggccctttttcaaaactatgttttccagtgtcatctctacctccctcattgatggccgctcatctcctttcaatttagtacaaattgctgctagtgtagctacttcatggacttctccaccttcctccatcttgacttgaggatctaatatatcgacaaggtttccttttgagagcagcttgatgaaatacgaaataaggttgtctccattatcaaacgtatcggcaataggtttttttcgagttaacaattccacaagaagaactccaaaactgaaaacatcgctcttgtctgttagtcgaccagtgtaatagtacataggatctaagtatccaattgtaccctgaatagctgtggttatttctgatcgttctactggggtgtactttgaagcccaaaaatctgacaccttcgcagttaaactatcatcaagaagtatattggcggacttaatatctctatgataaattggcattgaagaagctgagtgtagataggacaatgctctagctacctcaagtgcaatccttagtctgtcatcccatgatagtgataccggaccctcgatatgtagacgatgataaagggtcccatttgaaatgaattcgtaaaccaacaatgggacttctgtttcaaggcaacatcctagaagctttaccacgtttctgtggttgacttgagaaaggatcgcgacttcatttatgaattgactgatttctctctgaaccacgatcttcgatttttttatggcaacaacatttaggcctataattcctttaaacacaatgccatgcccaccagcaccgacctgacaagttctatcaaaattgtttgtggccttttgtagctcttccaaggtaattatcattctgtcaccaaaatctgtgtttttttatattaattgctgcaaaagtaacccgtgattttgcttaaagaacttctcttttagttttttctccttatgtttcttgatcacacgaattacgaatggactagcaatcactagaaatagaacaattgatccaccacaaactattagagctatggttgaccctgaaaaaggaaaatgcatgaagtgtcaagtctcgtgaattatttttagacataagacagactgggatagacttaaccagtaaatcacttggaatgatgaaactttcattggcacacttagcacgtagtgtttataatcatgtcctgttgcggacatagaaattactacctcggtcccaaaatttaacaagttttagagttagtcacggttattaagaaagttggtaaaattaaatagagagaggttgtaattggttgagaagtggaggtaggtgagcaaaatgaatggtggagggttataattggttgggaagggaatgttggtggagaagttaagatattttgggacaaatcctaagtgctaaaaattgttatattttgggacgtggagtagataacatactagcatagatataattgagtgaattgtcacctgcaatagaattcttggatgggatgcatccgccttttttgaagggatccccgtaggttccattttcacatcgacaatgaaacgatccaggaatatttatgcacgttccatagcacgggtacaatattggatccgcacactcgtcaatgtctacagaaatgtggcaacccaatgaaatgtatacatagtataatcatatatgcaggaaaagaggtaaaatcagtcaagaaaccgagagattgtttgctggatagctaataatgtaacaatcgtgtattcggttatataccttcgcatcctttaagcagggtggcgttgcctttgaagccttcaagacagtcgcagtcatatcctcctggtttgttcttgcaattgccgtaacatgggtagatatcaggagaacgacactcatgatatctataaataaaaattggaactggtcaagcagatatgaagaagccagaaaacagaattatgattagaattcactgattttctgtctaatacatatgagtaaaactccatatttgttaattatgaatttcagaattgcttatcataaagagtaacaaaatttgaacaccagtccaagcgctgctttgcatttgtggagtacttatttaaccgaggaaaaactagaaatttgtgaatttgtatacactataatgtaaaatatgaaaccaataacttatatatcaacaaattaaaatgtcttatgttgaatacaatatgtgacacaaaagctaattgcatatttgcgattactagttttggaactattgataaacctaggtcaatttttctgagctacaaaacttttacgtcggtaattataaatatagtaattgaatgttcggacacgtaaaatgatgtatgcattaacgtacattaatttaatttgtattagctccctccgtttcattttataagccgtttgactttttctctactcaactttgttaagtttgaccacatctaaatatcaaattagttttattgaatcgaacattgaatacattttgataatatgtttgttttgtgttgaaaatactactatatttttctataaatttagaaatttaaagaagtttgacaagaaaaaaaaagttaaacgacttacaatataaaacgacgagattattttttttaaaatggattaatatgattttctaaaacaagttatgtatagaaaatttttgaaagaaaacacaccgtttaacaatttaaaaagacgtgtgtgcgaaaaacttgagagttgagttgggaatgcgaagaaaaggactcaggcttaccatagcatccatcgatgatgtacggattgccttgataaccatgggagcactcgcagtgataccccctatgcgcataagcctcggagtctcggcaagagctgtgggcactgcaacattcaggggcagatgtgttccggggacatgtactcgtcgagttactgatgacccagtccagcaacgctggaagccctccaggatgttcatcgaccaacatatcaatggaaaagttgaatccctgatcaatcat
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| CDS seq | atgattgatcagggattcaacttttccattgatatgttggtcgatgaacatcctggagggcttccagcgttgctggactgggtcatcagtaactcgacgagtacatgtccccggaacacatctgcccctgaatgttgcagtgcccacagctcttgccgagactccgaggcttatgcgcataggggatatcatgagtgtcgttctcctgatatctacccatgttacggcaattgcaagaacaaaccaggaggatatgactgcgactgtcttgaaggcttcaaaggcaacgccaccctgcttaaaggatgcgaagggtcaaccatagctctaatagtttgtggtggatcaattgttctatttctagtgattgctagtccattcgtaattcgtgtgatcaagaaacataaggagaaaaaactaaaagagaagttctttaagcaaaatcacggaatgataattaccttggaagagctacaaaaggccacaaacaattttgatagaacttgtcaggtcggtgctggtgggcatggcattgtgtttaaaggaattataggcctaaatgttgttgccataaaaaaatcgaagatcgtggttcagagagaaatcagtcaattcataaatgaagtcgcgatcctttctcaagtcaaccacagaaacgtggtaaagcttctaggatgttgccttgaaacagaagtcccattgttggtttacgaattcatttcaaatgggaccctttatcatcgtctacatatcgagggtccggtatcactatcatgggatgacagactaaggattgcacttgaggtagctagagcattgtcctatctacactcagcttcttcaatgccaatttatcatagagatattaagtccgccaatatacttcttgatgatagtttaactgcgaaggtgtcagatttttgggcttcaaagtacaccccagtagaacgatcagaaataaccacagctattcagggtacaattggatacttagatcctatgtactattacactggtcgactaacagacaagagcgatgttttcagttttggagttcttcttgtggaattgttaactcgaaaaaaacctattgccgatacgtttgataatggagacaaccttatttcgtatttcatcaagctgctctcaaaaggaaaccttgtcgatatattagatcctcaagtcaagatggaggaaggtggagaagtccatgaagtagctacactagcagcaatttgtactaaattgaaaggagatgagcggccatcaatgagggaggtagagatgacactggaaaacatagttttgaaaaagggcccatcccgtagagggaatactgcctcatgtagacccgatgaaaatggaaattcagctcttcaaacgctgattgaaggagttaccacaggagcaagtagacaatacagtatggagttggaaatgttgtcatcaagctttcctcgataa
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| Protein seq | MIDQGFNFSIDMLVDEHPGGLPALLDWVISNSTSTCPRNTSAPECCSAHSSCRDSEAYAHRGYHECRSPDIYPCYGNCKNKPGGYDCDCLEGFKGNATLLKGCEGSTIALIVCGGSIVLFLVIASPFVIRVIKKHKEKKLKEKFFKQNHGMIITLEELQKATNNFDRTCQVGAGGHGIVFKGIIGLNVVAIKKSKIVVQREISQFINEVAILSQVNHRNVVKLLGCCLETEVPLLVYEFISNGTLYHRLHIEGPVSLSWDDRLRIALEVARALSYLHSASSMPIYHRDIKSANILLDDSLTAKVSDFWASKYTPVERSEITTAIQGTIGYLDPMYYYTGRLTDKSDVFSFGVLLVELLTRKKPIADTFDNGDNLISYFIKLLSKGNLVDILDPQVKMEEGGEVHEVATLAAICTKLKGDERPSMREVEMTLENIVLKKGPSRRGNTASCRPDENGNSALQTLIEGVTTGASRQYSMELEMLSSSFPR |
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| Function | Wall-associated receptor kinase 3 [UniProtKB/Swiss-Prot:Q9LMN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0013960 | OsLiXu_08g0013960.01 | Chr08 | 19023075 | 19026245 | - | NAM | ||
| CDS seq | atgattgatcagggattcaacttttccattgatatgttggtcgatgaacatcctggagggcttccagcgttgctggactgggtcatcagtaactcgacgagtacatgtccccggaacacatctgcccctgaatgttgcagtgcccacagctcttgccgagactccgaggcttatgcgcataggggatatcatgagtgtcgttctcctgatatctacccatgttacggcaattgcaagaacaaaccaggaggatatgactgcgactgtcttgaaggcttcaaaggcaacgccaccctgcttaaaggatgcgaagggtcaaccatagctctaatagtttgtggtggatcaattgttctatttctagtgattgctagtccattcgtaattcgtgtgatcaagaaacataaggagaaaaaactaaaagagaagttctttaagcaaaatcacggaatgataattaccttggaagagctacaaaaggccacaaacaattttgatagaacttgtcaggtcggtgctggtgggcatggcattgtgtttaaaggaattataggcctaaatgttgttgccataaaaaaatcgaagatcgtggttcagagagaaatcagtcaattcataaatgaagtcgcgatcctttctcaagtcaaccacagaaacgtggtaaagcttctaggatgttgccttgaaacagaagtcccattgttggtttacgaattcatttcaaatgggaccctttatcatcgtctacatatcgagggtccggtatcactatcatgggatgacagactaaggattgcacttgaggtagctagagcattgtcctatctacactcagcttcttcaatgccaatttatcatagagatattaagtccgccaatatacttcttgatgatagtttaactgcgaaggtgtcagatttttgggcttcaaagtacaccccagtagaacgatcagaaataaccacagctattcagggtacaattggatacttagatcctatgtactattacactggtcgactaacagacaagagcgatgttttcagttttggagttcttcttgtggaattgttaactcgaaaaaaacctattgccgatacgtttgataatggagacaaccttatttcgtatttcatcaagctgctctcaaaaggaaaccttgtcgatatattagatcctcaagtcaagatggaggaaggtggagaagtccatgaagtagctacactagcagcaatttgtactaaattgaaaggagatgagcggccatcaatgagggaggtagagatgacactggaaaacatagttttgaaaaagggcccatcccgtagagggaatactgcctcatgtagacccgatgaaaatggaaattcagctcttcaaacgctgattgaaggagttaccacaggagcaagtagacaatacagtatggagttggaaatgttgtcatcaagctttcctcgataa
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| Protein seq | MIDQGFNFSIDMLVDEHPGGLPALLDWVISNSTSTCPRNTSAPECCSAHSSCRDSEAYAHRGYHECRSPDIYPCYGNCKNKPGGYDCDCLEGFKGNATLLKGCEGSTIALIVCGGSIVLFLVIASPFVIRVIKKHKEKKLKEKFFKQNHGMIITLEELQKATNNFDRTCQVGAGGHGIVFKGIIGLNVVAIKKSKIVVQREISQFINEVAILSQVNHRNVVKLLGCCLETEVPLLVYEFISNGTLYHRLHIEGPVSLSWDDRLRIALEVARALSYLHSASSMPIYHRDIKSANILLDDSLTAKVSDFWASKYTPVERSEITTAIQGTIGYLDPMYYYTGRLTDKSDVFSFGVLLVELLTRKKPIADTFDNGDNLISYFIKLLSKGNLVDILDPQVKMEEGGEVHEVATLAAICTKLKGDERPSMREVEMTLENIVLKKGPSRRGNTASCRPDENGNSALQTLIEGVTTGASRQYSMELEMLSSSFPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0501088 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g29040 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0501088 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013660 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013690 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013570 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013860 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020990 | SBH | 0.000000 | 1.458236 | 0.475933 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0262700 | SBH | 0.672771 | 0 | 4.8727255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020860 | SBH | 0.0 | 0.000000 | 0.026833 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0292100 | RBH | 0 | 0.1202805 | 0.007569 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020210 | SBH | 0.034985 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020470 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020310 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0012680 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020540 | SBH | 0.000000 | 0.888510 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013400 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014060 | SBH | 0.0 | 0.0 | 0.0 |
