Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g09790 | OGI:08014880 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:5658727-5662659 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTGTTCGACGAAATGCCCCCGAAGAAAGCCAAGCCGTCCCGCGGGGGCGGCGCTGCGGAAGACCGGCTCAGCGCCCTCCCCGACGCGGTCCTGCACCACGTCATGTCGTTCCTGCGGGCGTGGGAGGTGGCGCGCACCTGCGTGCTCTCCCGCCGCTGGCGCCACCTCTGGGCCTCCGCGCCCTGCGTCGACCTCCGGCGTCTGGGGCGGCGGAGGCCACCTTCCGCCGCCGGAGCGGCTCGCCAGGTTCGCCTACCGGTTGCTGTTCGAGCGGGAGGTGTCAGCGCCGGTGGACATTCTCCGGGTGATGTCCAGCCCCGACGGCGAAGGGGAGGAGGATTACACCACTTCAGATGTCCAGACGTGGATCCGTGCCGCCATCAAGCGGAGAGCTCGGGTGATCCAGCTTACCGACCATCCAATGGATGAGGCGTTCTTTAACCTGGGCTTCGTCCCCATCATCTCCTGCCACCTCAAACACCTGAAGCTGTCTGGTTCTTTACTGTGGAACACGACGCTAATGCAGCTCTCTTCTCAGTGCCCTGCTTTGGAAATTCTAGAGCTCAAGAAATGTTCTCTGCACGGCCATGAGATTTCATCCACCTCTCTCAAGAGCTTGACCATGGTGAAGTGCAGGATCATGGCAGATGTCACCATTGCTGCTCCGAACCTCGTGTCTCTGCGGCTCTGCGCTGCATCAAGCCATACCACCGAGCTCCCTTGTTCGAGGATATAGGGTCACTCATGTTGAGTATTATGTGTTTAGGGGTATATTAGTAATTTCCTATCTCTATTGTACTCATATATGCCCTTTGGGCTAACACAATAGTAACTGTTCATTCTCCAATTTCCCCTAAATTGTGACATGGTATCAGAGCAAGAGCAAGGGATCAAACCCTAACGTCGATCCGGAGTCCACGCCGGCACGCCGGTGGCAGCTCGCCACCGGCGAGCCCATCCAATCCGTGCACATCCTCGTCAGCTTCGTCGTCCACCACCGTCGAGCCGTCAATCGTGGCAGCCAATCGTTTCGTCGTTCGTCCACAAGCAGCAAGCAGATCCAGTCAGCACAAGCAACAAGCAGCATCAAGCAATCAAATCCACAAGCAAGCAGCGGATGCATGAACAAGCATTCAGATCCAGTTCTTCGTCACCACGTCAGTCGTAGCCAGGCCGTACTCGTCGCGGATCTTGTCGTCGCGTCTCGCCGTGGCTCGTCGTTGTCGCCGCATTCCCATTGGCCGGTCGCGGCGCTCTCTTCATCGCCGCCAGCGCCGTCCTCCTCCCATGTCAGTCGTCCAGCTTTCCGTCCGCCGCCTGCGCGCGTGACCATCTGCATCGTCGCCGCACAGGTCAAGGTCCTGGTCCTCTTGGTCTAGCCTGCTCTGTTCTCTCTGCTTCTCCACATAGATGCTTGGAGACTGGTTACTGGACTTAACAGCAACAAGCCATCGTCTTCCCTAATATCAAGTAGCAGCGACAGCAATTTGCAAGTGTCATGCAGATCCACCTTGTTCCATATTCAAACATCAACAAATAGCAGTAGAGAAGCCCATATCGAGTTATGCTTCCCTCATCATGCAGCCGGCCTCTGCTCTTGCCGGATTTGTGAAGCCATCCATAGTCTCAACTATCTTGATTGTTGAATTGTTCCATCAACAGATCTATTTTGTGTTTGCTATGCTTGCTTACTGCTGCCATCAACAAGTCAATTAATATCCTTTGGTCTTGCAAACATATCATTGTGCTTCAGTTTGAGATAGGCAACAGAAAACCAAGGCACAGCCCTGTGCATGTCCTTTTGATTTTGATATTGCTTCTTGTCATCTGCATCAATTGTTCTCTTATGTCTTTTGCTAGTATCCTAAGTCATTTGCTAGTATATCAATGTCATCTACAAATCAATTTCCTATGTTTCCTATCAAGTCCATCAAAGTCCATCGGTTCGTCGAAGTCATGCTTGTCAATCATTATCACTATCTCGCTCGCTCCATGTCGAAGTTAGCCTTCTATCATCACCAGAAGCTCCACGTCGGAGCTGATCTTTGTCATATCACCAGCTCCCCATCGGAGTTGACATCATCATCAATCATTGAAGGGCCGAAGAACAGTTTGTGAAGGTCCTTCATCTCGTCATCATCACCGTCTCTGAATCAGTGAAGAGCCAAAGAACAGTTTGTGAAGGCTTTTGGTACTAAGGGCTGAAGAACAGTTTGTGAAGGCTCGAGGTCTACTTCATTGAGGATAGGATGGTTTTCTCTTCTTCTAATTCATTCAAGAGCAATGCTTCGACAACATCTTCAAACATGGACTTTGTATTTATAGTAGTGTGTCATTTATCTTGTGTTTAGTTTCAAATGCAATGCTATTGTATACACATTGCATTTGAGCAGGGGTGTTGAGTATTATGTGTTTAGGGGTATATTAGTAATTTCCTATCTCTATTGTACTCATATATGCCCTTTGGGCTAACACAATAGCAACTGTTCATTCTCCAATTTCCCCCAAATTGTGACAACTCACACTGGCCACAGGCACTATTGTGCTTGATGATTCACTTTTATGTGCTGGTTTTGATTACCAGTACAAAGACTTCGATGAGGATGCAATTGATGGAATCAATAGCGATGATGGTGAAGGTTGCACGAGTGATTCTGACTACGATGATAGTGACGCGAATACCTGTGAATACAGTGAGATTGCAGATGACTATGATGATGAAAAACAACGTCAAGAGCATTGTGAGGGGCATAATCCGATTGATGATTATGATGATGAAAATCAACATGAAGAGCATGGTGAGGAACATAATCAAATTGGACTTGATGAAGTTCTTGGTGGCCATAATGTTCTTCACATCCTATCAAATGCTGAAATTTTGGAGCTATTAGCTGATGGTGGAGAGGTATAGCTATGAATCTTCTTCTGCTCCCTGTTACATAACATTTTCCCTTAATGCGGATACATTAATTATTTTCATCATTACATAAGAAAAAAGCTTTCTCAATTTCTATGCACTGAACAAATTACTTGTATGTTCTATATGAAGGTGATTCTTAATAGAGCGCTGAAAACTTGCCCAACTTTTAGAAACCTGAAGACGTTGTCCCTTGGTGAATGGTGTATGGGTGCTGACTTTGATCCACTAGTTACATTCTTGCAGCATTCACCTAATCTGGAGAGGCTTTTCCTTGAACTTAAATTGGTGCGTGTATTTATATTATAATATATCGGTTGCTTGATGCTTCACATTTTTCATATTTTGACACGTGAGTTTTAGCACATGTCCATTGATAATTTATCTTCTTCTGCAAACAAAAACAAAAAGGATTACTACAGCATACAGGCAATGAAAGGAGTTACCAAAGCAGTGGGAAGATCATTTGTTTGCACACACCTTAAAATGGTGAAGATCAAATGTTCTATGAATGATGCTAGGGTCCATTGGTTGGCACAGTTGTTCAGGACTAATGGCTTACCTATTGAGAATATCTTTGTGCGTCAGACTCGCAGCATTTGTGAGTGATACTTCTCCTGTGAATTGCATCCCTGATGAAGTTGCAGTTCCCATCGTACATTATTACTTCTTTTGTTTGATGAAAGGCATTTTGTTTACTTGATGCTCTTGTGGTGCTTGATTAAAAACCATAAACTGATGTTTATGTCATGTCCTCCAGGGCTTCCCACCAGACCACAGTAACGTGAAGCTAGAGGGAGGCTGTCGTGAAGAAGCTGCACCGGTGGTGGGACCAATAATATCTTATGATCTTATTCAACATGATAATTTCGCTTATCACATTGTATTTAGCAGAGTTCTGAAGTGCAGAGCATCTGCGCTGATCATGCTGGAAGTACAGCATGTGATGCTTCTTTTGAGTACATTGGAACTAAGTATATATGGCTACCTGAATGCGAGAATGATCTGATCTAG
More
|
||||||||||
| CDS seq | ATGTGTTCGACGAAATGCCCCCGAAGAAAGCCAAGCCGTCCCGCGGGGGCGGCGCTGCGGAAGACCGGCTCAGCGCCCTCCCCGACGCGGTCCTGCACCACGTCATGTCGTTCCTGCGGGCGTGGGAGGTGGCGCGCACCTGCGTGCTCTCCCGCCGCTGGCGCCACCTCTGGGCCTCCGCGCCCTGCGTCGACCTCCGGCGTCTGGGGCGGCGGAGGCCACCTTCCGCCGCCGGAGCGGCTCGCCAGGTTCGCCTACCGGTTGCTGTTCGAGCGGGAGGTGTCAGCGCCGGTGGACATTCTCCGGGTGATGTCCAGCCCCGACGGCGAAGGGGAGGAGGATTACACCACTTCAGATGTCCAGACGTGGATCCGTGCCGCCATCAAGCGGAGAGCTCGGGTGATCCAGCTTACCGACCATCCAATGGATGAGGCGTTCTTTAACCTGGGCTTCGTCCCCATCATCTCCTGCCACCTCAAACACCTGAAGCTGTCTGGTTCTTTACTGTGGAACACGACGCTAATGCAGCTCTCTTCTCAGTGCCCTGCTTTGGAAATTCTAGAGCTCAAGAAATGTTCTCTGCACGGCCATGAGATTTCATCCACCTCTCTCAAGAGCTTGACCATGAGCAAGAGCAAGGGATCAAACCCTAACGTCGATCCGGAGTCCACGCCGGCACGCCGGTGGCAGCTCGCCACCGGCGAGCCCATCCAATCCGTGCACATCCTCGTCAGCTTCGTCGTCCACCACCGTCGAGCCGTCAATCGTGGCAGCCAATCGTTTCGTCGTTCGTCCACAAGCAGCAAGCAGATCCAGTCAGCACAAGCAACAAGCAGCATCAAGCAATCAAATCCACAAGCAAGCAGCGGATGCATGAACAAGCATTCAGATCCAGTTCTTCGTCACCACGTCAGTCGTAGCCAGGCCGTACTCGTCGCGGATCTTGTCGTCGCGTCTCGCCGTGGCTCGTCGTTGTCGCCGCATTCCCATTGGCCGGTCGCGGCGCTCTCTTCATCGCCGCCAGCGCCGTCCTCCTCCCATGTCAGTCGTCCAGCTTTCCGTCCGCCGCCTGCGCGCGTGACCATCTGCATCGTCGCCGCACAGTACAAAGACTTCGATGAGGATGCAATTGATGGAATCAATAGCGATGATGGTGAAGGTTGCACGAGTGATTCTGACTACGATGATAGTGACGCGAATACCTGTGAATACAGTGAGATTGCAGATGACTATGATGATGAAAAACAACGTCAAGAGCATTGTGAGGGGCATAATCCGATTGATGATTATGATGATGAAAATCAACATGAAGAGCATGGTGAGGAACATAATCAAATTGGACTTGATGAAGTTCTTGGTGGCCATAATGTTCTTCACATCCTATCAAATGCTGAAATTTTGGAGCTATTAGCTGATGGTGGAGAGGTGATTCTTAATAGAGCGCTGAAAACTTGCCCAACTTTTAGAAACCTGAAGACGTTGTCCCTTGGTGAATGGTGTATGGGTGCTGACTTTGATCCACTAGTTACATTCTTGCAGCATTCACCTAATCTGGAGAGGCTTTTCCTTGAACTTAAATTGGGCTTCCCACCAGACCACAGTAACGTGAAGCTAGAGGGAGGCTGTCGTGAAGAAGCTGCACCGGTGAGTTCTGAAGTGCAGAGCATCTGCGCTGATCATGCTGGAAGTACAGCATGTGATGCTTCTTTTGAGTACATTGGAACTAAGTATATATGGCTACCTGAATGCGAGAATGATCTGATCTAG
More
|
||||||||||
| Protein seq | MCSTKCPRRKPSRPAGAALRKTGSAPSPTRSCTTSCRSCGRGRWRAPACSPAAGATSGPPRPASTSGVWGGGGHLPPPERLARFAYRLLFEREVSAPVDILRVMSSPDGEGEEDYTTSDVQTWIRAAIKRRARVIQLTDHPMDEAFFNLGFVPIISCHLKHLKLSGSLLWNTTLMQLSSQCPALEILELKKCSLHGHEISSTSLKSLTMSKSKGSNPNVDPESTPARRWQLATGEPIQSVHILVSFVVHHRRAVNRGSQSFRRSSTSSKQIQSAQATSSIKQSNPQASSGCMNKHSDPVLRHHVSRSQAVLVADLVVASRRGSSLSPHSHWPVAALSSSPPAPSSSHVSRPAFRPPPARVTICIVAAQYKDFDEDAIDGINSDDGEGCTSDSDYDDSDANTCEYSEIADDYDDEKQRQEHCEGHNPIDDYDDENQHEEHGEEHNQIGLDEVLGGHNVLHILSNAEILELLADGGEVILNRALKTCPTFRNLKTLSLGEWCMGADFDPLVTFLQHSPNLERLFLELKLGFPPDHSNVKLEGGCREEAAPVSSEVQSICADHAGSTACDASFEYIGTKYIWLPECENDLI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g09790 | LOC_Os08g09790.1 | Chr08 | 5658727 | 5662659 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGTTCGACGAAATGCCCCCGAAGAAAGCCAAGCCGTCCCGCGGGGGCGGCGCTGCGGAAGACCGGCTCAGCGCCCTCCCCGACGCGGTCCTGCACCACGTCATGTCGTTCCTGCGGGCGTGGGAGGTGGCGCGCACCTGCGTGCTCTCCCGCCGCTGGCGCCACCTCTGGGCCTCCGCGCCCTGCGTCGACCTCCGGCGTCTGGGGCGGCGGAGGCCACCTTCCGCCGCCGGAGCGGCTCGCCAGGTTCGCCTACCGGTTGCTGTTCGAGCGGGAGGTGTCAGCGCCGGTGGACATTCTCCGGGTGATGTCCAGCCCCGACGGCGAAGGGGAGGAGGATTACACCACTTCAGATGTCCAGACGTGGATCCGTGCCGCCATCAAGCGGAGAGCTCGGGTGATCCAGCTTACCGACCATCCAATGGATGAGGCGTTCTTTAACCTGGGCTTCGTCCCCATCATCTCCTGCCACCTCAAACACCTGAAGCTGTCTGGTTCTTTACTGTGGAACACGACGCTAATGCAGCTCTCTTCTCAGTGCCCTGCTTTGGAAATTCTAGAGCTCAAGAAATGTTCTCTGCACGGCCATGAGATTTCATCCACCTCTCTCAAGAGCTTGACCATGAGCAAGAGCAAGGGATCAAACCCTAACGTCGATCCGGAGTCCACGCCGGCACGCCGGTGGCAGCTCGCCACCGGCGAGCCCATCCAATCCGTGCACATCCTCGTCAGCTTCGTCGTCCACCACCGTCGAGCCGTCAATCGTGGCAGCCAATCGTTTCGTCGTTCGTCCACAAGCAGCAAGCAGATCCAGTCAGCACAAGCAACAAGCAGCATCAAGCAATCAAATCCACAAGCAAGCAGCGGATGCATGAACAAGCATTCAGATCCAGTTCTTCGTCACCACGTCAGTCGTAGCCAGGCCGTACTCGTCGCGGATCTTGTCGTCGCGTCTCGCCGTGGCTCGTCGTTGTCGCCGCATTCCCATTGGCCGGTCGCGGCGCTCTCTTCATCGCCGCCAGCGCCGTCCTCCTCCCATGTCAGTCGTCCAGCTTTCCGTCCGCCGCCTGCGCGCGTGACCATCTGCATCGTCGCCGCACAGTACAAAGACTTCGATGAGGATGCAATTGATGGAATCAATAGCGATGATGGTGAAGGTTGCACGAGTGATTCTGACTACGATGATAGTGACGCGAATACCTGTGAATACAGTGAGATTGCAGATGACTATGATGATGAAAAACAACGTCAAGAGCATTGTGAGGGGCATAATCCGATTGATGATTATGATGATGAAAATCAACATGAAGAGCATGGTGAGGAACATAATCAAATTGGACTTGATGAAGTTCTTGGTGGCCATAATGTTCTTCACATCCTATCAAATGCTGAAATTTTGGAGCTATTAGCTGATGGTGGAGAGGTGATTCTTAATAGAGCGCTGAAAACTTGCCCAACTTTTAGAAACCTGAAGACGTTGTCCCTTGGTGAATGGTGTATGGGTGCTGACTTTGATCCACTAGTTACATTCTTGCAGCATTCACCTAATCTGGAGAGGCTTTTCCTTGAACTTAAATTGGGCTTCCCACCAGACCACAGTAACGTGAAGCTAGAGGGAGGCTGTCGTGAAGAAGCTGCACCGGTGAGTTCTGAAGTGCAGAGCATCTGCGCTGATCATGCTGGAAGTACAGCATGTGATGCTTCTTTTGAGTACATTGGAACTAAGTATATATGGCTACCTGAATGCGAGAATGATCTGATCTAG
More
|
|||||||
| Protein seq | MCSTKCPRRKPSRPAGAALRKTGSAPSPTRSCTTSCRSCGRGRWRAPACSPAAGATSGPPRPASTSGVWGGGGHLPPPERLARFAYRLLFEREVSAPVDILRVMSSPDGEGEEDYTTSDVQTWIRAAIKRRARVIQLTDHPMDEAFFNLGFVPIISCHLKHLKLSGSLLWNTTLMQLSSQCPALEILELKKCSLHGHEISSTSLKSLTMSKSKGSNPNVDPESTPARRWQLATGEPIQSVHILVSFVVHHRRAVNRGSQSFRRSSTSSKQIQSAQATSSIKQSNPQASSGCMNKHSDPVLRHHVSRSQAVLVADLVVASRRGSSLSPHSHWPVAALSSSPPAPSSSHVSRPAFRPPPARVTICIVAAQYKDFDEDAIDGINSDDGEGCTSDSDYDDSDANTCEYSEIADDYDDEKQRQEHCEGHNPIDDYDDENQHEEHGEEHNQIGLDEVLGGHNVLHILSNAEILELLADGGEVILNRALKTCPTFRNLKTLSLGEWCMGADFDPLVTFLQHSPNLERLFLELKLGFPPDHSNVKLEGGCREEAAPVSSEVQSICADHAGSTACDASFEYIGTKYIWLPECENDLI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0197950 | RBH | 0.109666 | 0.150286 | 5.498909 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09780 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0197950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006300 | RBH | 0.000000 | 11.647809 | 6.764721 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006260 | SBH | 0.084461 | 0.000000 | 0.558428 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006360 | RBH | 0.000000 | 2.333029 | 1.280749 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006300 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006140 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0086100 | SBH | 0.2318045 | 0.4451535 | 0.2860115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006000 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0089400 | RBH | 0.64496 | 1.318797 | 5.146271 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005950 | SBH | 0.210847 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006030 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006170 | SBH | 0.000000 | 0.000000 | 0.290822 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006030 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006030 | RBH | 0.156007 | 1.666437 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005900 | RBH | 0.355192 | 0.0 | 0.000000 |
