Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0197950 | OGI:08014880 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5659559-5661224 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACTGTTCATTCTCCAATTTCCCCTAAATTGTGACATGGTATCAGAGCAAGAGCAAGGGATCAAACCCTAACGTCGATCCGGAGTCCACGCCGGCACGCCGGTGGCAGCTCGCCACCGGCGAGCCCATCCAATCCGTGCACATCCTCGTCAGCTTCGTCGTCCACCACCGTCGAGCCGTCAATCGTGGCAGCCAATCGTTTCGTCGTTCGTCCACAAGCAGCAAGCAGATCCAGTCAGCACAAGCAACAAGCAGCATCAAGCAATCAAATCCACAAGCAAGCAGCGGATGCATGAACAAGCATTCAGATCCAGTTCTTCGTCACCACGTCAGTCGTAGCCAGGCCGTACTCGTCGCGGATCTTGTCGTCGCGTCTCGCCGTGGCTCGTCGTTGTCGCCGCATTCCCATTGGCCGGTCGCGGCGCTCTCTTCATCGCCGCCAGCGCCGTCCTCCTCCCATGTCAGTCGTCCAGCTTTCCGTCCGCCGCCTGCGCGCGTGACCATCTGCATCGTCGCCGCACAGGTCAAGGTCCTGGTCCTCTTGGTCTAGCCTGCTCTGTTCTCTCTGCTTCTCCACATAGATGCTTGGAGACTGGTTACTGGACTTAACAGCAACAAGCCATCGTCTTCCCTAATATCAAGTAGCAGCGACAGCAATTTGCAAGTGTCATGCAGATCCACCTTGTTCCATATTCAAACATCAACAAATAGCAGTAGAGAAGCCCATATCGAGTTATGCTTCCCTCATCATGCAGCCGGCCTCTGCTCTTGCCGGATTTGTGAAGCCATCCATAGTCTCAACTATCTTGATTGTTGAATTGTTCCATCAACAGATCTATTTTGTGTTTGCTATGCTTGCTTACTGCTGCCATCAACAAGTCAATTAATATCCTTTGGTCTTGCAAACATATCATTGTGCTTCAGTTTGAGATAGGCAACAGAAAACCAAGGCACAGCCCTGTGCATGTCCTTTTGATTTTGATATTGCTTCTTGTCATCTGCATCAATTGTTCTCTTATGTCTTTTGCTAGTATCCTAAGTCATTTGCTAGTATATCAATGTCATCTACAAATCAATTTCCTATGTTTCCTATCAAGTCCATCAAAGTCCATCGGTTCGTCGAAGTCATGCTTGTCAATCATTATCACTATCTCGCTCGCTCCATGTCGAAGTTAGCCTTCTATCATCACCAGAAGCTCCACGTCGGAGCTGATCTTTGTCATATCACCAGCTCCCCATCGGAGTTGACATCATCATCAATCATTGAAGGGCCGAAGAACAGTTTGTGAAGGTCCTTCATCTCGTCATCATCACCGTCTCTGAATCAGTGAAGAGCCAAAGAACAGTTTGTGAAGGCTTTTGGTACTAAGGGCTGAAGAACAGTTTGTGAAGGCTCGAGGTCTACTTCATTGAGGATAGGATGGTTTTCTCTTCTTCTAATTCATTCAAGAGCAATGCTTCGACAACATCTTCAAACATGGACTTTGTATTTATAGTAGTGTGTCATTTATCTTGTGTTTAGTTTCAAATGCAATGCTATTGTATACACATTGCATTTGAGCAGGGGTGTTGAGTATTATGTGTTTAGGGGTATATTAGTAATTTCCTATCTCTATTGTACTCATATATGCCCTTTGGGCTAACACAATAGCAACTGTTCATTCTCC
More
|
||||||||||
| CDS seq | ATTGTGACATGGTATCAGAGCAAGAGCAAGGGATCAAACCCTAACGTCGATCCGGAGTCCACGCCGGCACGCCGGTGGCAGCTCGCCACCGGCGAGCCCATCCAATCCGTGCACATCCTCGTCAGCTTCGTCGTCCACCACCGTCGAGCCGTCAATCGTGGCAGCCAATCGTTTCGTCGTTCGTCCACAAGCAGCAAGCAGATCCAGTCAGCACAAGCAACAAGCAGCATCAAGCAATCAAATCCACAAGCAAGCAGCGGATGCATGAACAAGCATTCAGATCCAGTTCTTCGTCACCACGTCAGTCGTAGCCAGGCCGTACTCGTCGCGGATCTTGTCGTCGCGTCTCGCCGTGGCTCGTCGTTGTCGCCGCATTCCCATTGGCCGGTCGCGGCGCTCTCTTCATCGCCGCCAGCGCCGTCCTCCTCCCATGTCAGTCGTCCAGCTTTCCGTCCGCCGCCTGCGCGCGTGACCATCTGCATCGTCGCCGCACAGGTCAAGGTCCTGGTCCTCTTGGTCTAG
More
|
||||||||||
| Protein seq | IVTWYQSKSKGSNPNVDPESTPARRWQLATGEPIQSVHILVSFVVHHRRAVNRGSQSFRRSSTSSKQIQSAQATSSIKQSNPQASSGCMNKHSDPVLRHHVSRSQAVLVADLVVASRRGSSLSPHSHWPVAALSSSPPAPSSSHVSRPAFRPPPARVTICIVAAQVKVLVLLV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0197950 | OsNip_08t0197950-01 | Chr08 | 5659559 | 5661224 | + | RAP2018-11-26 | ||
| CDS seq | ATTGTGACATGGTATCAGAGCAAGAGCAAGGGATCAAACCCTAACGTCGATCCGGAGTCCACGCCGGCACGCCGGTGGCAGCTCGCCACCGGCGAGCCCATCCAATCCGTGCACATCCTCGTCAGCTTCGTCGTCCACCACCGTCGAGCCGTCAATCGTGGCAGCCAATCGTTTCGTCGTTCGTCCACAAGCAGCAAGCAGATCCAGTCAGCACAAGCAACAAGCAGCATCAAGCAATCAAATCCACAAGCAAGCAGCGGATGCATGAACAAGCATTCAGATCCAGTTCTTCGTCACCACGTCAGTCGTAGCCAGGCCGTACTCGTCGCGGATCTTGTCGTCGCGTCTCGCCGTGGCTCGTCGTTGTCGCCGCATTCCCATTGGCCGGTCGCGGCGCTCTCTTCATCGCCGCCAGCGCCGTCCTCCTCCCATGTCAGTCGTCCAGCTTTCCGTCCGCCGCCTGCGCGCGTGACCATCTGCATCGTCGCCGCACAGGTCAAGGTCCTGGTCCTCTTGGTCTAG
More
|
|||||||
| Protein seq | IVTWYQSKSKGSNPNVDPESTPARRWQLATGEPIQSVHILVSFVVHHRRAVNRGSQSFRRSSTSSKQIQSAQATSSIKQSNPQASSGCMNKHSDPVLRHHVSRSQAVLVADLVVASRRGSSLSPHSHWPVAALSSSPPAPSSSHVSRPAFRPPPARVTICIVAAQVKVLVLLV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.109666 | 0.150286 | 5.498909 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09790 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0197950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006300 | RBH | 0.000000 | 11.647809 | 6.764721 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006360 | SBH | 0.000000 | 2.333029 | 1.280749 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026040 | SBH | 0.207599 | 1.689602 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
